>input_sequence_71371
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---------------------------------------------------ATGGCGGCTGGGCGAGCGTGTGCTCTTAG
CGTGGTGCTGTTGGTGGTGGTGGCGGCGCCGCTCCTCCTGGCCGGCGTGGCGGACGCCGACTGCTTCGACTACTGCTTCA
AGGACTGCATCGCCAAGGACAAGAACATGATCGACTACTGCAACTACGCCTGCGACAAGACCTGCTACGCGGGCGCGCCC
CAGCGGCCCTTGGCGGCGGCTGCCGCCCCCGGCGACATGGGATGCCAGCTCTCCTGCGCCAGGACTTCCTGCCACCGTCT
GGATCCAGGTAATCAGATTGGCACAATTCATGTGCGCCATGAATTAGTAATGCGCAACCACTGCACTCACGTC-----TG
ATGAGCCGACAACGACGATGTGGTGGTAAATTCTTTTTGCAGACCGCGAGGCCGCTGAGGCCTGCTCCGGGCAGTGCTAT
GACGGCTGCAAGACCAAGACTCTGCCGAGGCCTCTCCGCGCCGGCGCCGGCATGCCCACCACGTTAGGCCCGGTGCTCGC
CGACCTTCCTTCATCCGAGCCGGACCCAGATGACGCCTTTCCTTCATCCGAGCCGGATCCAGATGACGCCCTTCCTTCAT
CCGAGCCGGATCCAGATGATGCGGTGCGTGCGTCGTCAGAGGCGCCCGAACATGAGGCGATGGGGCCACGTCCACCGTTT
TCGGAGATCCACGCTGCTCCTCCGGCGTCCGCGTGA--------------------------------------------
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>chr3D_1_TraesCS3D01G215600
ACTAGGGACTCGGTGTCCCCGCACTTGCACGCTACAAATCCTCTCCCCATAATAATACTAAAACAGTCAGGTAAGGACGA
CAACGCTGCGAACCAAACTTTGGTTGGATAGTTAGAGAGATAGTGGTATCCGAGCCGATCAGGGTTCAAATTCTGGTGCT
CGCATTATTTCTGGATTTATTTCAGGATTTCCGGCGATGTGTTTTCAGTGGGAGGAGATGTTACCATGGACGACGAGACG
CCTACTGTGACTTTATAAGTATGACCGCTTGCGTCTGTGCTGTGTTAGAAAAAAGTCAACACTAAAACAGCCCGTGCCAA
AGAAGTAAACACGCCGCGCTAGCCTGTATGAAAACAAACCGAATCTTAAACCATTTTTATCCTACGGTATGTTAGCAAAT
CCGTTTATAAAAACTCAACGCTCCAACGCAACGGTCTTGTTCGGGACGAAAGAGAGAGAGAGAGAGTCTTCAT-------
---CGGGAAGAATCCTAACGTTTAGACGCACTTGATTTGAACGGCACCGCTCACGCCTTCCGCCCCTGCACAACTGCTGC
CGGCGCGTATCCCTTTCCCTTGTGCGCGCGCTCCTGCCAGATACTACCTATTCCCTCCTTTCCTAAATATTTGTTTTTCT
AGCCATTTCAAATAGTTACAACATACAAATGTATATAGACATATTTTAAAGTATAGGATCACTCATTTTGCTTCGTATGT
AGTTACTTGTTGAAATCTTTAAAAAGACAAATATTTAGAAACAAAGGGAGTACAATGCAACGGCAACAGCCAGAAACAGC
AACCGCACTGCTGTTGCAAGAACTAGACATCGCCCTGCGTACACGCACCCATCTCTCCCCAGCAGATCGACGACGCGGAC
ACGAAAGAACACGCACGGATACGCGCGCAGACACACATGCGTCCGGCGTGACGACCGAACCTCTCTATAAGAC-ACCGCC
CGCGCGCGCGTTCGACTTCGATCACGCCACTCCAGAGACCAGAGTTTAGCAATGGCGGCTGGGCGAGCGTGTGCTCTTAG
CGTGGTGCTGTTGGTGGTGGTGGCGGCGCCGCTCCTCCTGGCCGGCGTGGCGGACGCCGACTGCTTCGACTACTGCTTCA
AGGACTGCATCGCCAAGGACAAGAACATGATCGACTACTGCAACTACGCCTGCGACAAGACCTGCTACGCGGGCGCGCCC
CAGCGGCCCTTGGCGGCGGCTGCCGCCCCCGGCGACATGGGATGCCAGCTCTCCTGCGCCAGGACTTCCTGCCACCGTCT
GGATCCAGGTAATCAGATTGGCACAATTCATGTGCGCCATGAATTAGTAATGCGCAACCACTGCACTCACGTC-----TG
ATGAGCCGACAACGACGATGTGGTGGTAAATTCTTTTTGCAGACCGCGAGGCCGCTGAGGCCTGCTCCGGGCAGTGCTAT
GACGGCTGCAAGACCAAGACTCTGCCGAGGCCTCTCCGCGCCGGCGCCGGCATGCCCACCACGTTAGGCCCGGTGCTCGC
CGACCTTCCTTCATCCGAGCCGGACCCAGATGACGCCTTTCCTTCATCCGAGCCGGATCCAGATGACGCCCTTCCTTCAT
CCGAGCCGGATCCAGATGATGCGGTGCGTGCGTCGTCAGAGGCGCCCGAACATGAGGCGATGGGGCCACGTCCACCGTTT
TCGGAGATCCACGCTGCTCCTCCGGCGTCCGCGTGACAAGAATACCTCGGCGTACGGCCGTGACAGTTAGCATTGGCCGA
CCAATCGATATGTAAGCGCGATCACCAGGTGCGGAGGGATTAGCGCATCGACCAAAAAGCCGCGTGCTAATGGGTGTACA
CGTACTGTATTATTTAT-AACACTGCTGAATGAAGTGTCTTAGGCTACTTGTAACGGGAAGTTCTCCGTATCAATATAGT
GTACGGGTTTGCTAAACTCAGCTAACCGAGATTAAATCTGGTCTCATT------CAGTGGGCCATCTAGAATTACAAAAT
TTAAA-GAACTTGCTGATTTAGAAAAGGTG--CAAGGCTGTATTCTTGAGTTTGGATATATGCACTAGATGGAATGTCAC
ATATCTAATGTTGAAAACCGCAATCAACTATG-AAAAATGTTTGTGAGGTATGAGGAGGAAGACCCACT-CTATACGTTG
GATTTAAATAGTGAGAAACTCCGCTGCCCGCAAATTCCAACCGCAGAGTTTTTTCGTGCTGACTATGCACATCCTTTCTG
TGTAGCTAGGGAGGTGTGAGCTCCACCGCCGTTTGCTGCTCCGACATCGGTGGCCACCTTTCCCGCCGGGTCACTCATGG
GCACGGCGGCCACTCCTCCTGTCCTACGCCGCCCGGGTAGGGCAGCCACCCAGATACCAGGAGCTCCGCCGTTTCTGCTT
GAGGGTCTGGTTAACGGGCCGGCAGCGCTCATCGTTCGTTCCCCGCCTCTTGGCCGCAGGACAGGTTAGTCTCTTCGTTG
GTGTGTGCTTCGAGTTACAACACGCTCCTTGATGCATGCATGCTTCTTGCCGTGCCTCCTGCTGCTGCTCGCCGTTTCTT
GCTGCTTCCCTTAGACCTAGCTGTCGTTTAGCTAGTGCTCCTGTCCTTCTCGGTTCGGGCCTGGACTTGATCTATGGATG
GCTTGGGTTTTGAGGACGTTATGCTTGCAAAATATGGTTGCGGCACCGTCGAGGCTGTGGCCGGCCGGAGCCGGCTGGCG
AAGGTGCT
>chr3A_144
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---------------------------------------------------------------GTTCAAATATTGGTGCT
TGCATTATTCCTGAATTTATTTCAAGATTTCCGGCGATACGTTTTCGGTGGGAGAAGATGTTCTCATTGACGACGAGGCG
TCTACCATCACTTCGTAAATATGACCGTTTGCGTTTGTACTGTCTTAAAAAAAAGACAACACTAAAACAGCCCGTGCCAA
AGAAGTAAACA-------------------------AACCCAATCTTAAACCATTTTTATCCTACGGTATGTTAGCAAAT
CCGTTTTTAAAAACTCAACGCTCCAACGCAACGGTCCTGTTCGAGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCTT
CACCGGGAAGAATCCTAACGTTTAGACGCACTTGATTTGAACGGCACCGCTCACGCCTTCCGCCCCTGCACAACTGCTGC
CGGCGCGTATCCGTTTCCCTTGTGCGCGCGCTCCTGCCCGATATATAC--------------------------------
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-------------------------------------------------GTACAATGCAACGGCCACAGCTAGAAACAGC
AACCGCACTGCTGTTGCAAGAACTAGACATCGCCCTGCGTACACGCATTCATCTCTCCCGT-------------------
----------------------------AGACACTCATGAGTCTGGCGTGACGATCGACCCTCTCTATAAGACCACCGCC
CGCGCGCGCGTTT------GATCACGCTACTCCAGAGACCAGAGTGTAGCAATGGCGGCCGGGCGAGCGTGTGCTCTTAG
CGCGGTGCTGGTGGTGGTGGT---GGCGCCGCTCCTCCTGGCCGGCGCGGCGGACGCCGACTGCTTCGATTACTGCTTCA
AGGACTGCATCGCCAAGGACAAGAACATGATCGACTACTGCAACTACGCCTGCGACAAGACCTGCTACGCGGGCGCGCCC
CAGCGGCCCTTGGCGGCGGCTGCCGCCTCCGGCGACATGGGATGCCAGCTCTCCTGCGCCAGGACTTCCTGCCACCGTCT
GGATCCAGGTAATCAGATTGGCACAGTTCATGCGCGCCATGAATTAGTAATGCGCAACCACTGCACTCACGTCACGTATG
ATGAGCCGACAACGACGATGTGGTGGTAAATTCTTTTTGCAGACCGCGAGGCCACTGGGGCCTGCTTCGGGCAGTGCTAC
GACGGCTGCAAGACCAAGACTCTGCCGAGGCCTCTCCGCGCCGGCGCCGGCATGCCCACCACGTCAGGCCCGGTGGTCGC
CGACCTTCCTTCATCCGAGCCGGACCCAGATGACGCCTTTCCTTCATCCGAGCCGGACCCAGATGACGCCCTTCCTTCAT
CCGAGCCGGACCCAGATGATGCGGTCCGTGCGTCGTCAGAGGCGCCGGAACATCAGGCGATGGGGCCACGTACACCGTTA
TCGGAGATCCACGCTGCTCCTCCGGCGTCTGCGTGACAAGAACACCTCAGCGTACGGCCGTGACAGTCAGCATTGGCCGA
CCAATCGATATGTAAGCGCGATCACCAGGTGCGGAGGGATTAGCGCATG---------GCCGCGTGCTAATGGGTGTACA
CGTA-----TTATTTATAAACACTGCTGAATGAAGTGTCTTAGGCTACTTGTAACGGGATGTTCTCCGTATCAATATAGT
GTACGGGTTTGTTAAACTCAGCTAACGGAGATTAAATCTGGTCCCATTCAGTGCCAGTGGGCCATCTAGAATTATAAAAT
TTAAAAGAATTTGCTGAGTTAGAAAAGGTGGACAAGGCTGTATTCTTGAGTTAGGATATATGCACTAGATGAAATTTCAC
ATATCTAATGTTGAAAACCGCGGTCAACTATGAAAAAATGTTTGTAGGGTATGAGGAGGAAGACCCACTTCTATACGTTG
GATTTAAACAGTTAGAAAGCTC----------------------------------------------------------
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>chr3B_478
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-------AAGAATCCTAACGTTTAGACGCACTTGATTTGAACGGCACCGCTCACGCCTTTCGCC-CTGCACAACTGCTAC
CGGCGCCTATCCGTTTTCCTTGTGCGCGCGCTCCTGCCA-----------------------------------------
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-------------------------------------------------------------------------AAACAGC
AACCGCACTGCTGTTGCAAGAACTAGACATCGCCCTGCGTACACGCACCCATCTCCCCCGT-------------------
----------------------------AGACACTCATGAGTCTGGCGTGACGACCGAACCTCTCTATAAGAC-ACCGCC
AACGCGCGCGTTCGACTTCGATCACGCCACTCCAGAGACCAGAGTTTAGCAATGGCGGCCGGGCGAGCGTGTGCTCTTAG
CGCGGTGCTTGTGGTGGTGGT---GGCGCCGCTCCTCCTGGCCGGCGTGGCGGACGCCGACTGCTTCGACTACTGCTTCA
AGGACTGCATCGCCAAGGACAAGAACATGATCGACTACTGCAACTACGCCTGCGACAAGACCTGCTACACGGGCGCGCCC
CAGCGGCCCTTGGCGGCGGCTGCCGCCCCCGGCGACATGGGATGCCAGCTCTCCTGCGCCAGGACTTCCTGCCACCGTCT
TGATCCAGGTAATCAGATTGGCACAGTTCATGTGCGCCATGAATTAGTAATGCGCAACCACTGCAC-----TCACGTATG
ATGAGCCGACAACGACGATGTGGTGGTAAACTCTTTTTGCAGACCGCGAGGCCGCTGAGGCCTGCTTCGGGCAGTGCTAT
GACGGCTGCAAGACCAAGACTCTGCCGAGGCCTCTCCGCGCCGGCGCCGGGATGCCCACCACGTTAGGCCCGGTGGTCGC
CGACCTTCCTTCATCCGAGCCGGACCCG----------------------------------------------------
--------------GATGATGCGGTCCGTGCGTCGTCAGAGGCGCCCGAACATCAGGCGATGGGGCCACGTACACCGTTT
TCGGAGATCCACGCTGCTCCTCCGGCGTCTGCGTAACAAGAATACCTCGGCGTACGGCCGTGACAGTTAGCATTGGCCGA
CCAATCGATATGTAAGCGCAATCACCAGGTGCGGAGGGATTAGCGCATGGACCAAAAAGCCGCGTGCTAATGGGTGTACA
CGTA-----TTATTTGT-AACACTGCTGAATGAAGTGTCTTAGGCTACTTGTAACGGGAAGTTCTCTGTATCAATATAGT
GTACGGGTTTGTTAAACTCAGGTAACGGAGATTAA----------ATT------CAGTGGGCCATCCAGAATTACAAAAT
TTAAA-GAACTCGCTGAGTTAGAAAAGGTGGACAAGGCTGCATTCTTGAGTCTGGATATATGCACTAGATGGAATGTCAC
GTATCTTATGTTGAAAACCGCAATCAACTACAAAAAAATGTTTGTGAGGTATGAGGAGGAAGACCCACT-CTATACGTTG
GATTTAAACATTGAGAAAGCTC----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SS-------
S--------S---S----------S-------------SS------S-------S-------SS---S---------S--
S----SS-S----SS---S--------S------S---S----S---S-------S------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSS----S---------------------------------------
------S-----------------------------S------S-----S----------------SSSSSSS-------
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------------S------------------------------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-----S---------
-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----S---S------------------------------------
-----------------------------------------------------------S--------------------
--S-------S----------SSS--------------------------------------------------------
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-------------------------S------------------------------------------------------
------------------------------------------------------------------S-------------
---------------------------------------------------------------------------S----
---------------------------------------------------------S----------------------
----------S--------------S---------------------------S-----------------S--------
-----------------------------S--------------------------------------------------
------------------------------------------------S-------------------------------
----SSSSS-----------------------------------------------------------------------
-----------S--------------S----------------S------------------------------------
-----------------S--------------------------------------------------------------
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--------S---------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_87
-------------------------------------------------------------------CAGGTAAGGACGA
CAACGCT-------------------------------------------------------------------------
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>reverse_1672
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-----------------------------------------------------------------------CCACCGTTT
TCGGAGATCCA---------------------------------------------------------------------
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>forward_142
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------------------------------------------GTGGTATCCGAGCCGATCAG------------------
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>reverse_2169
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--------TAGTGAGAAACTCCGCTGCC----------------------------------------------------
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