>input_sequence_71370
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-----------------------------------------CCATCACACAGACGCCCAGCCATCGTGCACACGAACCAC
ACACCGGCGCAAGACAGGGAAAAGAGGGAAGGTCGGGAGCAT---------------------CCACGTAGTGGTGCGCA
ATGTACCAAGCAATCCCCTACAGCAGCACCCGGCCCTGGGCCCGCCCGTCGCCGGCGGCGGAGCCGGCCGTGGCCGTCAA
GGCGGAGACCGCGGAGGCGGCGGCGTCCCGGGAGGACGCGGCGGGGGTTGAGAGGGCGGTGTCGGAGAGCCCGGTCGTGG
TGGTGGGGAGGCGGGCCTGCTGCCTCACCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCCGCCGTGCAC
GAGGTCGCCGACGAGGCCGCGCTCGCCGGGGTCGTGCCGGACGGTGGGGAGGCAGCGGCGCTCCCGGCGGTCTTCGTCGG
CGGGAAGCTCCTCGGAGGCCTCGATCGCCTCATGGCCGTCCACATCTCCGGCGAGCTCGTGCCCATCCTCAAGAAGGCCG
GCGCCCTCTGGCTCTGATCGGACCCTTCCTTCCTTTCCTTAGTTTCCTTTCGTCAGAAGACGGTGCCGCGGTTTAATCCT
GGCCGTCGGATCGAAGTTTACACCGCGGCCGATTTACTCTAGGATTTTGGGTTTCTTTAATGGTGTGCTAATTTTTTTCT
CAAAAAATATATTTATATGAGAAAAAAAGAAACAGACAGCTA--------------------------------------
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>chr3A_1_TraesCS3A01G246700
ATTGTTTCTTGGTGCATGGTGTAAGCCCTTGCCAGGAGTTTCCGACACATTCGTGGTCGAGCTACTGGCTATGAGAGAAG
GGGTGATCTTCGCCCATTTGCGCGAGTATTCACATGTGATCATGGAGGTTGACTGCCTGGATCTTGTTAAACTATGGAAC
TCACATCAAAATTCATGTTTGATTGCGGCGCCTGTCTTACAAGAATTGGAGGATGTTATGCCTAGTTTTTTTTTGTTTTC
GGTTCATCATGTTGGTAGGGACCTGAATTTCCCGGCCCACCAATGTGCTCAATGTGCTTGTACGTTTGAGGGTATGGATA
GTTGGCTTGATCAAAGCCC---------------------------AGATTTTGTCATTAGCAACCTACGGGCAGATTGT
AACCAGATAATATTTCGTTGAATAAAGTCCCAATTCGATGG--------AATTTTTTTTTATCCGCACCAGTGATTTGTG
CTCCCACCAC--TAGTGTGCCTCTCAACTCTAATGTACTAGTAACTTGATCAAGTCAGAGAGAGTCGGTGCGGGAAAAAT
ACAAGTCAAGTAACACGAAGAATCTGAATTCAGGAGGCCAACACGAAGAATCTGAATTCAGGACACGAGACCGGACAGTG
TTGTCCTCCAGAAAGGACCTTGGTGATGCTCAACAA-----------------------------------AGCCAGAGC
CAAGGAAAACAACATCCACCGGCCAAACGCCCG-AAATTCCACACTCCGGTCCGGTGAGACCCTTTCAGCCCGCGCATCG
TTCGCTGTTCCGCGGCGCTGCCCACACCCATGATTTGACTC-------CCAACTGCAACGCCGCCGTCCGCGTCGCAGCA
GCTGTCGTCACGGATCCGGCGGCCCCGACAGCGGCTGACGCCCCTCCACGTCACTCCCCGCGACAACTCGTGTGCTGTGC
AGTCCCCGCGGAAAGCTCCCCCGCGTCCTGCGGGTCCCGCATACTACCGCCGTGCTGTCGTCACCTTCCCACCTCACCTC
CCTCCTCCCTGTATATATC-GGGCCCCTTCGCCTCCCCAAGCCATCACACAGACGCCCAGCCATCGTGCACACGAACCAC
ACACCGGCGCAAGACAGGGAAAAGAGGGAAGGTCGGGAGCAT---------------------CCACGTAGTGGTGCGCA
ATGTACCAAGCAATCCCCTACAGCAGCACCCGGCCCTGGGCCCGCCCGTCGCCGGCGGCGGAGCCGGCCGTGGCCGTCAA
GGCGGAGACCGCGGAGGCGGCGGCGTCCCGGGAGGACGCGGCGGGGGTTGAGAGGGCGGTGTCGGAGAGCCCGGTCGTGG
TGGTGGGGAGGCGGGCCTGCTGCCTCACCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCCGCCGTGCAC
GAGGTCGCCGACGAGGCCGCGCTCGCCGGGGTCGTGCCGGACGGTGGGGAGGCAGCGGCGCTCCCGGCGGTCTTCGTCGG
CGGGAAGCTCCTCGGAGGCCTCGATCGCCTCATGGCCGTCCACATCTCCGGCGAGCTCGTGCCCATCCTCAAGAAGGCCG
GCGCCCTCTGGCTCTGATCGGACCCTTCCTTCCTTTCCTTAGTTTCCTTTCGTCAGAAGACGGTGCCGCGGTTTAATCCT
GGCCGTCGGATCGAAGTTTACACCGCGGCCGATTTACTCTAGGATTTTGGGTTTCTTTAATGGTGTGCTAATTTTTTTCT
CAAAAAATATATTTATATGAGAAAAAAAGAAACAGACAGCTAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCAATCTATTCATCTTCAATCATGGCAGTACAACGAATACCAGAAATAAAAATTA
CAACCAGAATCATAAACCACCTAGCGACGACTACAAGCACCGAAGCGAGCCGAAGGCGCGCCGCCGTCATCGCCCCTCCA
TCGCCGGAGCCGGGCACAACTTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCCCATAGGACCAGCACCCCAG
AACAGTAACCGCCGCCGATGAAGATTTTGGTAAGTAATTTATTTCGTCTGGTCATGGGCATGTGAATGAGTACGGAAGAA
GAGC--------------------------GTTTGTCGTTTCTATTTCCGAGTTAATGAGAATCAGATGCTTCTTACGGA
-AATCTTCACCTGCGGCCTGAAATTTCATTCTCCGTTTTTTCAGTTAAC---AAGTTAGGCGTCTAGCTTTCGTTGGTAC
ACGGACGCTTGATTCAAGTCATGGTTGGTTGTTGACAAGATTTATAGGTGGATGTTACTGCATACAGGTGGCATGGCTAA
CCTATGTCAATAGGGTATTCATGTGT---GTACAGTACAGCTACCGATTCCATTCCAGTCCAACTGTTTCAGTGTTTAGT
TGCGGATTACTAATAAACCATCCATCAATCAACAA
>chr3D_1
ATCGTTTCTTGGTGCATGGTGTAAGCCCTTGCGAGGAGTTTTCGACACATTCGTG-TCGAGCTGCTGGCTACGAGAGAAG
GGGTGATCTTCGCCCATTTGCGCGAGTATTCACATGTGATCATGGAGTTTGACTGCCTGGATCTTGTCAACCTACGGAAC
TCACATCAAAATTCACGTTCGGTTGCGGCGCCTGTCATACAAGAATTGGAGAATGTCATGCCTAGTTTTTCTTTGTTTTC
GGTTCGTCATGTTGGTAGGGACCCGGATTTCCCGGCCCATCGATGTGCTCAGTGTGCTTGTACGTTTGAGGGTACGGATA
GTTGGCTTGATCAAAGCCCATATTTTGTCAACTTTTTCTGCGAGGTAGATTTTGTCATTAGCAGCCTACGGGCAGATTGT
AACCGGATATTATTTCGTTGAATAAAGTCCCAATTCGATGG--------AAAGAAAAAA-ATCCGCACCAGTGGTTTGTG
CTCCCACCAC--TAGTGTGCCTCTCAACTCTAATGTAC-AGTAACTTGACCAAGTCAGAGAGAATCGGTGCGGGAAAAAT
ACAAGTCAAGTAACACGAATAATCTGAATTCAGGAGGCCAACACGAAGAATCTGAATTCAGGACACGAGACCGGATAGTG
TTGTTCTCCTGAAAGGACCTTGGTCATGCTCAACAAAGCGGTATCCTTGGAATCTTGTTTCTCAGAGCCAGAGCCAGAGC
CAAGGAAAACAACATCCACCGGCCAAACACCCGAAAATTCCACACTGCGGTCCGGTGAGACCCTTTCAGCCCGCGCAT--
---------------CGCTGCCCACCCCCATGATCTGACTT-------CCAACTGCAACGCCGCCGTCCGCGTCGCAGCG
GCTGTCGTCACGGATCCGGCGGCCCCGACAGCGGCTGACGCCCCTCCACGTCACTCCCCGCGACAACTCGTGT-----GC
AGTCCCCGCGGAAAGCTCCCCCGCGTCCTGCGGGTCCCACATACTACCGCCGTGCTGTCGTCACCTTCCCACCTCACCTC
CCTCCTCGCTGTATATATC-TGGCCCCTTCACCTCCCCAAGCCATCACACACACGCCCAACAATCGCAGACACGAACCAC
ACACCCGCGCAAGACAGGGAAAAGAGGGAAGGCCGGGAGCAT---------------------CCACGTAGCCGTGCGCA
ATGTACCAAGCCATCCCCTACAGCAGCACCCGGCCCTGGGCCCGCCCGTCGCCGGCGGCGGAGGCGGCCGTCGCCGTCAA
GACGGAGACCGCGGAGGCGTCGGCGTCCCGGGAGGACGCGGCGGGGGTTGAGAGGGCGGTGTCGGAGAGCCCGGTCGTGG
TGGTGGGGAGGCGGGCCTGCTGCCTCACCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCCGCCGTGCAC
GAGGTCGCCGACGAGGCCGCGCTCGCCGGGGTCGTGCCGGACGGCGGGGAGGCAGCGGCGCTCCCGGCGGTGTTCGTCGG
GGGGAAGCTCCTCGGCGGCCTCGATCGCCTCATGGCCGTCCACATCTCCGGCGAGCTCGTGCCCATCCTCAAGAAGGCCG
GCGCCCTCTGGCTCTGATCGGACCCTTCCTTCCTTTCCTTAGTTTCCTTTCGTCAGAAGACGGTGCCGCGGTGTAATCCT
GGCCGTTGGATCGA-----------------ATTTACTCTAGGATTTTGGGTTTCTTTAATGGTGTGCTAAATTTTTTCT
CAACAAATATATT--TATGAGAAAAAAAGAAACAGACAGCTAGCGTTACTGATTTTG-----------------------
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---------------------------------GTAATTTATTTCGTCTGGTCATGAGCATGTGAAT----ACGGAAGAA
GAGCATGGGCGGCATTGCAGCGTCTGTACAGTTTGTCGTTTCCATTTCCGAGTTAATGTGAATCAGATGCTTCTTACGGA
-A-TCTTCACCTGCGGCCTGAAATTTCATTGTCCCTTTTTTTTCGTTAACATAAGTTAGGCGTCTGGTTTTCGTTGGTAC
ACGGACGCTTGATTGGAGTCATGGTTGGTTGTTGAGAGGA--TATAGGTCGATGTTACTGCATACAGGTGGCATGGCTAA
CCTATGTCAATAGGGTATTCATGTCATGCGTACAGTACAACTCCTGATTCCATTCCAGTCCAACTGTTTCGGTGTTTGGT
TGCGGA-TACTAATAAATCACCTATCAACAA----
>chr3B_306
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-----------------------------------------------------------------TTGAGGGTACGGATA
GTTGGCTTGATCAAAGCCCA---------------------------GATTTTGTCATTAGCAGCCTACGGGTAGATTGT
AACCGTATAATATTTCGTTCAATAAAGTCCCAATTCGATGCAAAAAGAAAAAGGAAAAC-ATCCGCACCAGTGATTTGTG
CTCCCACCACCATAGTGCGCCTCTCAACTCTAATGTAC-AGTAACTTGATTAAGTCAGAGAGAGTCGGTGCGGGAAAAAG
AC-AGTCAAGTAACACGAAGAATCTGAATTCAGGA----------------------------CACTAGAGCAGATAGTG
TTGTCCTCCAGAAAGGACCTTGGTCATGCTCAACAAAGCGATATCCTTGGAATCTTGTTTCTG------------AGAGC
CAAGGAAAACAACATCCACCGGCCAAACATCCGAA-ATTCCACACTCCGGTCCGGCGAGACCCTTTCAGCCCGCGCATCG
TTCGTTGTTCCGCGC-----CCCAGCCTCATGATCTGACTTCCAAGTTCCAACTGCAACGCCGCCGTCCGTGTCGCAGCA
GCTGTCGTCACGGATCCGGCGGCCCCGACAGCGGCTGACGCCCCTCCACGTCACTCCCCGCGACAACTCGTGT-----GC
AGTCCCCGCGGAAAGCTCCCCCGCGTCCTGCGGGTCCCACATACTACCACCGTGCTGTCGTCACCTTCCCACCTCACCTC
CCTCTTCGCTGTATATATCGGGGCCCCTTCACCTCCCCAAGCCATTACGCCCCAACCAT---------CACACGAACCAC
ACACCCGCGCAAGAGGGAAAA------GAAGGCCGGGGGCATCAAAGAATCCAAGCCAACGCGCCACGTAGCGGCGAGCA
ATGTACCAAGCCATCCCCTACAGCAGCACCCGGCCCTGGGCCCGCCCGTCGCCGGCGGCGGAGGCGGCCGTCGCCGTCAA
GACGGAGACCACGGAGGCGGCGGCGTCCCGGGAGGACGCGGCGGGGGTTGAGAGGGCGGTGTCGGAGAGCCCGGTCGTGG
TGGTGGGGAGGCGGGCCTGCTGCCTCACCCACGTGGTGAAGCGGCTGCTGCAGGGGCTCGGGGTCAACCCCGCCGTGCAC
GAGGTCGCCGACGAGGCGGCGCTCGCCGGGGTCGTGCCGGACGGCGGGGAGGCT---GCGCTCCCGGTGGTGTTCGTCGG
GGGGAAGCTCCTCGGCGGCCTCGATCGCCTCATGGCCGTCCACATCTCCGGCGAGCTCGTGCCCATCCTCAAGAAGGCCG
GCGCCCTCTGGCTCTGATCGGACCCTTCCTTCCTTTCCTTAGTTTCCTTTCATCAGAAGACGGTGCCGCGGTTTAATCCT
GGCCGTTGGATCGAATTTTACACCGCGGCCGATTTACTCTAGGATTTTGGGTTTCTTTAATGGTGTGCTAAATTTTTTCT
CAACAAATATATT--CATGAGAAAAAA-GAAACAGACAGGTAGCATTACTGTTTTTC-----------------------
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---------------------------------GTAATTTATTTCGTCTGGTCATGAGCATGTGAAT----ACGGAAGAA
GAGCGTGCGCGGCATTGCAGCGTCTGTACAGTTTGTCGTTTCTATTTCCGAGTTAATGAGAATCAGATGCTTCTTACGGA
TA-TCTTCACCTGCGGCCTGAAATTTCAT-----------------------AAGTTAGGCGTCTGGTTTTCGTTGGTAC
ACGGACGCTTGATTGAAGTCATGGTTGGTTGTTGAGAAGA--TTTAGGTCGATGTTACTGCATACAGGTGGCATGGCTTC
CCTATGTCAATAGGGTATTCATGTCATGCGTACAGTACAGCTCCTGATTCCATTCCAGTCCAACTATTTCGGTGTTTGGT
TGCGGA-TACTAATAAATCACCTATCAACAA----
>SNPs
--S-----------------------------S--------S-------------S-------S-------S--------
-----------------------------------------------S-------------------S--S---S-----
---------------S---S-S--------------S--------------S----S-------------S---------
-----S-----------------S-S-------------S-S---------S----------------------S-----
---------------------------------------------------------------S----------------
----S----------------------------------------------SSSSSSSSS--------------------
--------------------------------------S-----------------------------------------
---------------------------------------------------------------------------S----
------------------------S-------------------------------------------------------
----------------------------S---------------------------------------------------
----S---------S----------S--------S-----S---------------------------------------
-------------------------------------------------------------------------SSSSS--
--------------------------------------S-----------------------------------------
-------S----------------------S--------------------S-------S-S----SS------------
-----S--------------------------S--------------------------------------S--------
-----------S---------------------------------------------------S-------S--------
-S------------------------------------------------------------------------------
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--------------------------------------------S--------------------------S--------
S--------------S----------------------------------------------------------------
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------S--------S-------------------------------------------------------S--------
---S---------SS------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S----------SSSS---------
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--S---------------------------S---S------SSSS-S-S----------------S-S------------
--------------S--------------------S----SS-------S------------------------------
------------------------SS----------------S-S-------------------------S------S--
------S----------S--S-S-----SS-SSSS
>forward_42
----------------------AAGCCCTTGCCAGGAGTTTC--------------------------------------
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>reverse_1687
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------CGGATCGAAGTTTACACCGC------------------------------------------------------
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>forward_1092
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--------------------------------CTCCCCAAGCCATCACACAG----------------------------
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>reverse_2370
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-------------------------------------------------GTGCTAAGGCCCCATAGGAC-----------
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