>input_sequence_71352
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-------------------------------------------------ATGGACAGAGCTGGCGGTAACCAAGCAGGCC
AGGTGTCGAAGAAAGGAAAGAAGAAGCACGCGAAAGACGAGTCAGACCGGCAGAAGCAGGCTGAGAAGAAGAGGCGCCGG
CTGGAGAAAGCGCTCGCAAACTCTGCCGCGATCATCTCGGAACTGGAGAAGAAGCGGCAGCAGAAACAGGAGGAGCAGAG
GAGGCTGGACGACGAAGGGGCCGCGATAGCCGAGGCGGTGGCCCTTCATGTCCTCATAGGCGAAGACTGCGATGAACCCC
GTCAGCTGAGGTGGAACGGCCATAGAGGCCGCGGCCATCGGGACGATTTCGTGGATCACGAACCGGCTCTAGGCGCGCAA
GGAGCAGGAGCAGATACCTATCCATATGGAAGCCGGTCACCGCTGGCACGGGCCCCTCGTTCCCACGTGCCCCAGTGGAG
GCTCACCGACTGTGGCATGTCCGGGCCATTCTCGTTCTCATCGTGGGAGCGAATGGGCGATTTTGAGGGGCTATACTGCG
AAGGGGCACCCTGCCAGACAGACCAAGACACTTACTGCCACGGCCTCGTAGCAGCAACCCAGGCCGTCTCTCCATTCGGA
TACGGTTCGGAGGATCCATTCCCTGCCCATGGAACGGAGGGGGCTTCCTCCATCAACATCATGCTG---GGCGGCACCAG
CAACAGCCTGAACATCTACAGAAGACAATTCTAG----------------------------------------------
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>chr7D_1_TraesCS7D01G016200
TGATGATGATACGTGTGTTCTTGTATTGATATATGCAATTAGACAGCATCAAAAGCTAATCTGTGGAGCTTTCGTTCTGA
TTTGG-----GCCGCTAGATTCACAAACGAGCAACGTTTGTAACCTTGTATGGAGAATCCAGCATTTACCAGGGTAGCCA
TGAGCCATTTTCAGGAGTTTTCCATAGGGATGCAAGTGGCTCGCTGCGTATGCTGCATCCTCATACTACACGTTAGTGTG
TTGGTTTTTGCGGCCG---TTAGAGCACTAATAGGAGTGTTTTGTGGGCCAAGCACACTTGCATCCCCAGTTTTCCACTT
TGGACCAGTTTGCACTTTTAACTTGTGTTGTAGCAAATGCTGAATTTTGCTGTTCGCTGCACAGGGAGGCCACTTTATTC
AGTGCTGTTCACTTTGCTGCTAAGTTTGGCCGTTTACTAGTGGATCAGATTATCTTTGTTACTGTGTGCCAC-TTTTTAA
TTGGATGAAACCGGACTGCAAAATACTCTGTATAGTTATGTTATGTCTGCTGTTGAACTATACGATGCTTTGATCTTTCT
GAGTTATTTTCTGCAAAATGGATCATCATCCATGTTTTTACTATAAGTTTACTTGATTTACTTATATATTCCTTGGATTA
CCGAGAAGGGAACATGTCTTGCGCGCATTGAATCTTCGTTTCTAACCTGAACTTTCTTCTTTTCTCGATACAGGAGAAGA
TCCTTATGAGTTGGTTGGCTGTGAATTCATATAAATTCTGGTACTGTGAAAATGGGTCAAAAGGTGGCAGGAAGTTCGTG
ACGAGATTAACCATAGACGATTGAGGCCTGAGTGGATTTAGGTATTCTGTTGTGACAGCTTAAGTGGCTCTTCAACTTGA
AGACGTTGCTGTTGCCTTAGGATATGCTCTTTTCAGCGAGGAGTACAGCCACACACTCTTAGATTGTAATTTTTCTTAAT
TGGATTAGTACAGGAAGATCAGATACAGTGAAAAGGGAGCGCAGTCGTGATGGACAGAGCTGGCGGTAACCAAGCAGGCC
AGGTGTCGAAGAAAGGAAAGAAGAAGCACGCGAAAGACGAGTCAGACCGGCAGAAGCAGGCTGAGAAGAAGAGGCGCCGG
CTGGAGAAAGCGCTCGCAAACTCTGCCGCGATCATCTCGGAACTGGAGAAGAAGCGGCAGCAGAAACAGGAGGAGCAGAG
GAGGCTGGACGACGAAGGGGCCGCGATAGCCGAGGCGGTGGCCCTTCATGTCCTCATAGGCGAAGACTGCGATGAACCCC
GTCAGCTGAGGTGGAACGGCCATAGAGGCCGCGGCCATCGGGACGATTTCGTGGATCACGAACCGGCTCTAGGCGCGCAA
GGAGCAGGAGCAGATACCTATCCATATGGAAGCCGGTCACCGCTGGCACGGGCCCCTCGTTCCCACGTGCCCCAGTGGAG
GCTCACCGACTGTGGCATGTCCGGGCCATTCTCGTTCTCATCGTGGGAGCGAATGGGCGATTTTGAGGGGCTATACTGCG
AAGGGGCACCCTGCCAGACAGACCAAGACACTTACTGCCACGGCCTCGTAGCAGCAACCCAGGCCGTCTCTCCATTCGGA
TACGGTTCGGAGGATCCATTCCCTGCCCATGGAACGGAGGGGGCTTCCTCCATCAACATCATGCTG---GGCGGCACCAG
CAACAGCCTGAACATCTACAGAAGACAATTCTAGATCATAGTTACTTTCTTTTTTACACCAAAGGTCGATCTTTTCATTT
GCTGTGATACTTAGTGTTGCGCCGAGAAACCAAAAGTGGATATAGGAT-ATATAG--GAGCCGTCTTACTGTCGAGTCGA
AGCAGAAGCGGTGTGTATTTGGCGTCAGTTTGTTACAGACAGTGGGTTTTTGTGATGAATTATTAA-TATATGTTTTTGC
TTTTACCAGAGGGTG----ATGTGTATGTGTAGCTCAATTTGTTGCTGCATGCTCCAGTCCCAGTGTGTTTGCACCAGAT
GGAGATGAGATTTGGTTGTGG-TAGTGCTGGTCGGTCACAAGTTGTTCTGGGTTTGGCTGGTCGCCACCTCAGTGTGTGT
GGTGGTATTATTATTGTTGTTCGTTTTGCAATGTCAGATCTGAATGGTGTGAGTCAGTGAGTGTGTGTGTGGTACCAGTC
GATCTCTTTTTGCCCACCTTTTCTGTGGATTAGCCCATTGTGGATTGGAT-----GGGGTCTCCCCAAACTTGGCACCAC
CATTGCTGTCATGAGCATGCATGCATGAAAAGTAAGTTGTGTCGCGCGTGTGTAAGACGAGCTGGAGTTGCATGCCTATC
CGATTTTTATTG-AGCATTAGAAGCAGGGCATCCATGTGTTTGCCATTGCTGA-------------------ATTTTGTT
TGATTTTGTGAACTTTGTGTTGATTTGGAGAAGTGTTCGCCTTGTCTGGTCGATGTTTCAAAATTTGTTAGTTTT--TTG
GTTTTGGTTCTGTTGTACGTTTGTGCTGTTAATGTGTA-GTGCAAGTTATGT---------------------------T
TTTGCTGCATACTTCGTCCGAATTTGAACTAAAACCACGACATTTATTTTGTATCGGAGGGAGTACTACATTGTTCACTA
CAATGTTTTTTTT----GAGAGCATGCAAATTGCATGTCTTAGCTTTATAGAAGGCCGAGGGTAAATTGCAAGAAAGGCC
GACGAGCTCCCACCATAACCCGGTGACAAGTAAATCCACTCCAACTCGAACACACACAAAAC
>chrUn_55
------------------------------------------------------GCTAATCCATGGAGCTTTCGTTCTGA
TCTAATCGGTGCCGCTAGATTCACAAACCAGCAATGTTTAACCTC--GTAGGGAGAATCCAGCATTTACCACGGTAGCCA
TGAGCCGTTTTCAGGAGTTTTCCATAGGGATGCAAGTGGCTCGCTGCATGTCCTGCATCCTCATACTACACATTAGTGT-
TTGGTTTTTGCGGCCATTTTTAGCGCACTAATAGGAGTGCTTTGTGGGCCAAGCACACTTGCATCCCCAGTTTTCCACTT
TGGACTAGTTTGCACTTATAACGTGTGTTGTAGCAAATGCTGAATTTTGCTGTTCGCTGCACAGAGAGGCCACTTTATTC
AGTGCTGTTCACTTTGCCGCTAAGTTTGGCCGTTTACTAGTGGATCAGATTATCTTTGTTACTCCGTGCCAC-TTTTTAA
TTGGATGAAACCGGACTGCAAAATACTCTGTATAGTTATGTTATGTCTGCTATTGAACTATACGATGCTTTGATCTTTCT
GAGTTATTTTCTGCAAAATGGATCATCATCCATGTTTTTACTATAAGTTCACTTGATTTACTTATATATTCCTATGATTA
CCGAGAAGGGAATATGTCTGGCGTGCATTGAATCTTCGTTTCTAACCTGAACTTTCTTCTTTTCTCGATACAGGAGAAGA
TCCTTATGAGTTGGTTGGCTGTGAATTCATATAAATTCTGGTACTGTGAAAATGGGTCAAAAGGTGGCAGGAAGTTCGTG
ACGAGATTAACCATAGACGATTGAGGTCTGAGTGGATTTAGGTATTCTGTTGTGACAACTTAAGTGGTTCTTCAACTTGA
AGACGTTGCTGTTGCCTTAGGATATGCTCTTTTCAGCGAGGAGTACAGACACACACTCTTAGATTGTAATTTTTCTTAAT
TGGATTAGTACAGGAAGATCAGATACAGTGAAAAGGGAGCGCAGTCGTGATGGACAGAGCTGGAGGCAACCAAGCAGGCC
AAGTGTCGAAGAAAGGAAAGAAGAAGCATGCGAAAGACGAGTCAGACCGGCAGAAGCAGGCTGAGAAGAAGAGGCGCCGG
CTGGAGAAAGCACTCGCAAACTCCGCAGCGATCATTTCAGAGCTGGAAAAGAAGCGGCAGCAGAAACAGGAGGAGCAGAG
GAGGCTGGATGACGAAGGGGCTGCGATAGCCGAGGCTGTCGCCCTTCATGTCCTCATAGGCGAAGATTGCGATGAACCCC
GCCAGCTAATGTGGAACGGCCATAGAGGCCGCGGCCATCGGGGTGATTTTGTGGATCACGAGCCGGCTCCAGGCGCGCAA
GGAGCAGGAGGAGACGCCTATCCATATGGAAGCCGGTCACCGCTGGCACGGGCCTCTCGTCCCCACATGCCCCAGTGGAG
GCTGACCGACTGTGGCATGTCCGGGCCGTTCTCGTTCTCATCGTGGGAGCGAATGGGCGATTTTGAGGGGCTATACTGCG
AAGGGACACCCTGTCAGACAGACCAAGACACTTACTGCCACGGCCTCGTAGCAGCAACCCAGGCCGCCTCTCCATTCGGA
TACGGTTCGGAGGATCCATTCCCTGCCCATGGAACGGAGGGTGCTTCCTCCATCAACATCATGCTGGGCGGCGGCACCAG
CAACAGCCTGAACATCTACAGGAGACAATTCTAGATCATAGTTACTTTCTTTTTTACACCAAAGGTCGATCTTTTCATTT
GCTGTGATACTTAGCTTTGCGTCGAGAAACCGAAAGTGGATATAGGGATATATAGGAGAGCCGTCTTACTGTCGAGTCGA
AGAAGAAGCGGTGTGTATTTGGCGTCAGTT----ACAGAAAGTGTGTTTTTGTGATGAATTATTAA-TATATGTTTTTGC
TTTTACCTGAGGTTG----ATGTGTA--------------------------------------TGTGTTTGCACCAGAT
GGAGATGAGATTTGGTTGTGGCTAGTGCTGGTCGGTCACAAGTTGTTCTGGGTTTGGCTGGTCGGCACCTCAGTGTG---
-GTGGCATTATTGTTGTTGTTCTTTTTGCAATGTCAGATTTGAATTTT--------GTGA-----------GTACCAGTT
GATCTCTTTTTGCCCACCTTCTCCGTGGATTAGCCCATTGTGGATTGGATTGGATGGGGTCTCCCCAAACTAGGCACCAC
CATTGCTGTCATGAGCATGCATGCATGAAAAGTAAGTTGTGTCGCGCGTGTGTAAGACGAGCTGCAGTTGCATGCCTATC
TGATTCTTATTG-AGCATTAGAAGTAGGCCATCCATGTGTTTGCCATTGCTGA-------------------AT------
-------------TTTGTGTTGATTTGGAGAAGTGATCTCCTTGTCTGCTCAATGTTCCAAATTTTGTTTGTTTTCTTTT
GTTTTGGTTCTGTTGTACGCTTGTGCTGTTAATGTGTAAGTGCAAGTTATGTGCTGTTAATGTGTAAGTGCAAATTATGT
TTTGCTTTGTACACCCTCCGAATCTGAACTAAAACCACCACGCTTATTTATGATCGGAGGGAGTAGTACATTGTGCACTA
CAATGGTTTTTTCTTTTGAGGGCATGCAAATTGCATGTCTTAGCTTTACAGAAAGACGAGGGTAAATTACAAGAAAGACC
GACAAGCTCCCACCATAACCCGGTGACAAGCAAATCCACTCCAACTCGAACGCACACAAAAC
>chr7A_63
--------------------------------------------------------------GTGGAGCTTTCGTTCTGA
TCTAATCGGTGCCGCTAGATTCACAAACGGGCAACGTTTGTAAACTTGTAGGGAGAGTCCAGCATTTGCCACGGTAGCCA
TGAGCCATTTTCAGGAGTTTTCCATAGGGATGCAAGTGGCTCGCTGCATATCCTGCATCCTCATACTACACATTAGTGTG
TTGGTTTTTGCGGCCG---TTAGCGCACTAATAGGAGTGTTTTGTGGGCCAAGCACACTTGCATCCCCAGTTTTCCACTT
TGGACTAGTTTGCACTTATAACTTGTGTTGTAGCAAATGCAGAATTTTGCTGTTAATTGCACAGAAAGGCCACTTTGTTC
AGTGCTGTTCACTTTGCCGCTAAGTTTGGCCGTTTACTAGTGGATCAGATTATCTTTATTACTGTATGCCACGTTTTTAA
TTGGATGAGACCGGACTGCAAAATACTCTGTATAGTTATGTTATGTCTGCTATTGAACTATACGATGCTTTGATCTTTCT
GAGTTATTTTCTGCAAAATGGATCATCATCCATGTTTTTACTATAAGTTTACTTGATTTACTTATATATTCCTTGGATTA
CCGAGAAGGGAATATGTCTTGCGTGCATTGAATCTTCGTTTCTAACCTGAACTTTCTTCTTTTCTCGATACAGGAGAAGA
TCCTTATGAGTTGGTTGGCTGTGAATTCATATAAATTCTGGTACTGTGAAAATGGGTCAAAAGGTGGCAGGAAGTTCGTG
ACGAGATTAACCATAGACGATTGAGGCCTGAGTGGATTTAGGTATTCTGTTGTGACAGCTTAAGTGGCTCTTCAACTTGA
AGACGTTGCTGTTGCCTTAGGATATGCTCTTTTCAGCGAGGAGTACAGCCACACACTCTTAGATTGTAATTTTTCTTAAT
TGGATTAGTACAGGAAGATCAGATACAGTGAAAAGGGAGCGCAGTCGTGATGGACAGAGCTGGCGGTAACCAAGCAGGCC
AAGTGTCGAAGAAAGGAAAGAAGAAGCACGCGAAAGACGAGTCAGACCGGCAGAAGCAGGCTGAGAAGAAGAGGCGCCGG
CTGGAGAAAGCGCTCGCAAACTCTGCTGCCATCATCTCGGAGCTGGAGAAGAAGCGGCAGCAGAAACAGGAGGAGCAGAG
GAGGCTGGACGATGAAGGGGCCGCGATAGCCGAGGCGGTGGCCCTTCATGTCCTCATAGGCGAAGACTGCGATGAACCCC
GTCAGCTGAGGTGGAACGGCCATAGAGGCCGCGGCCATCGGGACGATTTCGTGGACCACGAACCGGCTCTAGGCGCGCAA
GGAGCAGGAGCAGATACCTATCCATATGGAAGCCGGTCGCCGCTGGCACGGGCCTCTCGTTCCCACATGCCCCAGTGGAG
GCTCACCGACTGTGGCATGTCCGGGCCGTTCTCGTTCTCATCGTGGGAGCGAATGGGAGATTTTGAGGGGCTATACTGCA
AAGGGACACCCTGCCAGACAGACCAAGACACTTACTGCCATGGCCTGGTAGCAGCAACCCAGGCCGCCTCTCCATTCGGA
TACGGTTCGGAGGATCCATTCCCTGCCCATGGAACGGAGGGGGCTTCCTCCATCAACATCATGCTGGGCGGTGGCACCAG
CAACAGCCTGAACATCTACAGAAGACAATTCTAGATCATAGTTACTTTCTTTTT-ACACCAAAGGTCGATCTTTTCATTT
GCTGTGATACTTAGCTTTTCGTCGAGAAACCGAAAGTGGATATAGGGA-ATATAGGAGAGCCGTCTTACTGTCGAGTCGA
AGAAG---CGGTGTGTATTTGGCGTCAGTT----ACAGACAGTGGGTTTTTGTGATGAATTATTAAATATATGTTTTTGC
TTTTACCAGAGGCTGCTTGATGTGTATGTGTAGGTCAATTTGTTGTTGCATGCTCCAGTCCCAGTGTGTTTGCACCGGAT
GGAGATGAGATTTGGTTGTGG-TAGTGCAGGTCGGTCACAAGTTGTTCTGCGTTTGGCTGGTCGCCACCTCAGTGTG---
-GTGGTATTATTATTGTTGTTCTTTTTGCAGTGTGAGATCTGAATGGT--------GTGAGTGTGTGTGTGGTACCAGTT
GATCTCTTTTTGCCCACCTTTTCTGTGGATTAGCCCATTGTGGATTGGAT-----GGGGTCTCCCCAAACTTGGCACCAC
CATTGCTGTCATGAGCATGCATGCATGAAAAGTAAGTTGTGTCGCGCGTGTGTAGGACGAGCTGGAGTTGCATGCCTGTT
AGATTCTCACTGAAGCATTAGAAGTAGGCCATCCATGTGTTTGCCATTGCTGAATTTTGTTCGATTTTCTGAAT------
-------------TTTGTGTTGATTTGGAGAAGTGATCTCCTTGTCTGCTCGATGTTCCAAATTTTGTTT----------
GTTTTGGTTCTGTTGTACGCTTGTGCTGTTAATGTGTAAGTGCAAGTTATGT---------------------------T
TTTGCTGCGTACTCCCTCCGAATTTGAACTAAAACCATGACATTTATTTTGTATCGGAGGGAGTACTGCATTGTGCACTA
TAATGTTTTT---TTTTGAGAGCATGCAAATTGCATGTCTTAGCATTATAAAAGGCCGAGGGTAAATTGCAAGAAAGACT
GACAAGCTCCCACCGTAA-CCGGTGACAAGCAAATCCACTCCAACTTGAAC-----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------------------
-S-SS--------------------------------------S------S--------------------S--------
-----------------------------------------------S---S-------------------S--------
-----------------------S--------------------------------------------------------
-----S-----------S----------------------------------------------S---------------
-----------------S--------------------------------------------------------------
---------------------------------------------------S----------------------------
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------------S----------S--------------------------------------------------------
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-S------------------------------------------------------------------------------
--------------------------S--------------S--------------------------------------
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------------------------------------------------------S-----------S-------------
---------------------------S----------------------------------------------------
-----S------------------------------------------------------------S-------------
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--------------SS-----S---------S--------------SS--------------------------------
--S---------------------------SSSS----------------------------------------------
------------S--------------------S-----------S----------------------------------
-----------------------------------------------------------------------------SSS
S---------------------S-------------------------SSSSSSSS-----------------------S
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S----S------------------S---S---------------------------------------------SSSSSS
SSSSSSSSSSSSS----------------------S--S---------S--------S----S------S---------S
-------------------S------------------------------------------------------------
--------S----S-S----------------------------------------------------------S-----
------------S----------------------------------------------------------------S--
---S--------------------------S--------------------S----------
>forward_664
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----GAAGGGAACATGTCTTGCGC--------------------------------------------------------
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>reverse_2345
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------------------------CAGGGCATCCATGTGTTTGC------------------------------------
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