>input_sequence_71346
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-----------------------------------------ATGTCGGAAGAAATGACAATGTTGGGACGAGCCGGTGTA
GCTGGAGATTCGTCGCACCCTCGACATCAAGAGATCTCTATCGACCGTGGTCCGCAAACATCGATTGATGAGTTGTTGAA
GGTAATAAAAGGAGCCAATGGCATGCCGGTGCTGTTTGTCCCCTCCAGTGACGGCCGGCTGGTGGCAGTAGCCGTAGACG
GCGTTCAGAGTTTGATGCCGGCCAATGGCG---------------ACGGGAGCGAGTCTTATGAGAAGAGGGAGCATCAT
TTCCGTTCATGGTTATTGCTCCTGACGTCACTTGTTGCCACCGTCACCTTCACCGCAGGGATTACTCCACCCGGTGGTTT
CTGG---GCGGACGACAGCAACGGG------CACGTCGCTGGTACCCCAATTATGCGAGACAAATTTCGCAGGAGGTACT
TCTTCTTTCAGTACTTCAACACATGCGCCTTCTTCACGTCCTTGATGATCATCGCGTCGCTCGCCTGGAACAGGAATAAC
AAGAAGATCATGACTATTCCTTTCGTATGCCTTGTAGTAATTTGTTTTCTGTGCCTGGGATCTAGCTTTATCATCGGCAC
GTGGAACAGCAACCG---TAGCCCCTTACAACTAGCGACTGTCGTTTTCATCCTTGCCCTTAACATTGTCTACCTGACGT
GCCATCACATTACGGAAAAGTGTTCTGGTAC---------GCTTCGGGGATCCTCCTAA---------------------
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>chr6D_1_TraesCS6D01G380800
TATAGAGAAATATGATGGGTGTAAGGTATATGTCATATACAATTGGTGTTGAAGCACTCGAATATATGCCGCGTTGTAAC
GCACAGGCAATTAGCTGAATTTATAGAGCTACAGTCAAGAGGCAAAAATTCCTCAATATATGGGGGTCCTTGGTGAAGCC
ACACGGCAGTGGTACACTCCGTACGACTATAGTTTGCCAAACCATCGGCCACTCTATTTCTCTATAGTTTGTCCAAGGTA
TGCAGTTAACCTCCCTCTCTCTCTTTCTGCATACTGCTTCTGATGGTTCTATCTTTTTTATCTAGAGCGGTTGAGCCAAT
CAACTTTATAGATATATAAAGACATTGAAAAGCCATTACAAAAGTTTGTAAGCAAACAGAAAGTGACTAAATCAGTGCCA
TAGAGGGTTATACATGTCATGTTTTGAGTTTAGGTGCAATTCGACATCAATATATCCTTGTTATCATTTTCCTAGTTTAT
AGTACAAAACCGAATTTGTATGCTCCGGTGGTTGTTTTCGAACTTTGTTTGGTTGATTGGACACAATTGTACCACAAATA
TCATCCCCAAAATATATATCTAAAATATCTTGCCATTATTCTATGGAACCTTGTTGCAGAGACTTATGTATACTATATCG
GGTTTTTATTTTTTTACGAGGGTCAATGGATAGTACTATAACTACCACTACACAAGGAGGAAACTGAAATGTCAACTACC
AGCATCTTAGTTTGGAAGACCATAATTTGAGAGCATTTTCTTTTGTTGACAGGAGGAGGGGCAGGCCCATTTTATTTGAA
TAAGATATGAGAATGTAGCAACAACGTTAAGGTCCCCTAAAAAACGTTAATGGTTATTTACAAGAATATATAGAAAAGTT
GATTTATATCTCACACTTAAGCTCTATCCGGGCTAAGAGAAAAAATCATTCTAACCATGTGTTTTACACAAGAAAGACAG
ATTCA-CCAGTTAATGGAGCTGATGTTCATCACAGAGAAATATGTCGGAAGAAATGACAATGTTGGGACGAGCCGGTGTA
GCTGGAGATTCGTCGCACCCTCGACATCAAGAGATCTCTATCGACCGTGGTCCGCAAACATCGATTGATGAGTTGTTGAA
GGTAATAAAAGGAGCCAATGGCATGCCGGTGCTGTTTGTCCCCTCCAGTGACGGCCGGCTGGTGGCAGTAGCCGTAGACG
GCGTTCAGAGTTTGATGCCGGCCAATGGCG---------------ACGGGAGCGAGTCTTATGAGAAGAGGGAGCATCAT
TTCCGTTCATGGTTATTGCTCCTGACGTCACTTGTTGCCACCGTCACCTTCACCGCAGGGATTACTCCACCCGGTGGTTT
CTGG---GCGGACGACAGCAACGGG------CACGTCGCTGGTACCCCAATTATGCGAGACAAATTTCGCAGGAGGTACT
TCTTCTTTCAGTACTTCAACACATGCGCCTTCTTCACGTCCTTGATGATCATCGCGTCGCTCGCCTGGAACAGGAATAAC
AAGAAGATCATGACTATTCCTTTCGTATGCCTTGTAGTAATTTGTTTTCTGTGCCTGGGATCTAGCTTTATCATCGGCAC
GTGGAACAGCAACCG---TAGCCCCTTACAACTAGCGACTGTCGTTTTCATCCTTGCCCTTAACATTGTCTACCTGACGT
GCCATCACATTACGGAAAAGTGTTCTGGTAC---------GCTTCGGGGATCCTCCTAACCAGTCGCTTAAGAGGTCCGC
TTACAGTTACGAATAAGTAACGGCAAAGAAGAAGATTTGCAGAAGAAACAAGAGGAAAAATCCTTAACAGTCTGTGTGCA
AACTTCAATTATGGCCTCATGGAGTCAATGATAATTGTAGCGAACCCTGGTGTGTCTATTGTATTTGTAACTGCGCGCGT
GAGAACCCAGCTTCTGCGACTCATTAGTAACACCTATTTTGTCACATGAAATTGTAATAAGTTGATTCCTCTATATACCA
GTCATACTTAGGGTTGCGCTTACGACCAGGTATCATCTTTTCTTTTTGGGTCAGCTGGATCTCCGCAACGCAGGTTGCAT
ATGGGTGTGTCAAGATCACCGAAGCGTGTGCCCTAACTTCTAGCACGATATATTTTTTTTGCTGGGTAACTTCTAGCATG
ATTAGCTACACAAATAAACCAGCAAGGA----------------------------------------------------
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----------------------------------AATTGTGCCGGCGTCGAGGAGTATGGCCGTGACGACGAGAGCAAGC
ATCTGAAGTGTTGTGAACAGGGGGAAATCCGCGCCGGCGTCGAGGTGTGTGGCTGTACCCGTGGCCGGCATGGTGCTAAC
ACTAGTGGCAGTCGGAATTTCACAACTGGGATTCGGACTTTCAGAGAAGAAGCTGCCTTGCTACTTGGAGATCCGTACTG
CCAGGTGTCACTCAACAGAGTGGGTCTCCAGATTAGAAGTA-----TATATGACCAGGTCGCATAGGAATTTTTTTTCCA
T-AACTTCAACCCTGGTGGGTTAGGAATACCACTGTTCACCTAAC---CATCCAACCACAGGTTGATTCAACTACATGGA
TAACTTGGAACTATAACATTGATCAATTCACGTTATGTTCATGCGCCCCAAGCACCCGGTGTTGTTGGTGTTCATGCCCG
TCATGTTCAGCACGCACTTTGGTGTTGCCCTGGGCCGGTGGCCGTGCCATTGGCCTCGTGACCGATCTCCTAGCATTGCT
GTTGTGCGATGTATGCTGCAGGCCATGCCCCAGT
>chr6B_893
ACATT---------------------------------------------------------------------------
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------------------AAACACTATATGGGCTAACAGAAAATTTCATTCTAACCATGTGTTTTACACAAGAAAGCCAG
ATTTA-CCAGTTAATGGAGTACATGTTCATCGCAGAGAAATATGTCGGAAGAAATGACAATGTTGGGACGAGCCGGTGTA
GCTGGAGATTCGTCGCACCCTCGACATCGAGAGATCTCTATCGACCGTGGTCCGCAAACATCGATTGATGAGTTGTTGAA
GGTAATAAAAGGAGCCAATGGCATGCCGGTGCTGTTTGTCCCCTCGAGTGACGGGCGGCTGGTGGCAGGAGCCGTAGACG
GCGTTCAGAGTTTGATGCCGGCCAATGGCG---------------ACGGGAGCGAGTCTTATGAGAAGAGGGAGCACCAT
TTCCGTTCATGGTTATTGCTCCTGACGTCACTAGTTGCCACCGTCACGTTCACCGCAGGGATTACTCCACCCGGTGGTTT
CTGG---GTGGACGACGGCAACTGG------CACGCCGCTGGTACCCCAATTATGCGCGACAAATTTCGCAGGAGGTACT
TCTACTTTCAGTACTTCAACACATGCGCCTTCTTCACGTCCATGATGATCATCGCGTCGCTCGCCAGGAACAGGAATAGC
AAGATGATCATGACTATTCCTTTCGCATGTCTTGTAGTAATTTGTTTTATGTGCCTGGGATCTAGCTTTGTCATCGGCAC
GTGGAACAGCAACCG---TAGCCCCTTACAACTAGCGACTGTCGTTTTCATCCTTGCCCTTAACATTGTCTATCTGATGT
GCCATCATATTACGGAAAAGTGTTATAGTATAATCCAAAAGCTTCAGGGATCCTCCTGATCAGTCGCTTAAGAGGTCCGC
TTACGGTTACGAATAAGTAACGGCAAAGAAGAAGATTTGCTGAAGAAACAAGAAGAAAAATCCTTAACAGTCTGTGTGCA
AACTTTAATTATGGCCTCATGGAGTCAATGGTAATTGTAGCGAACCATGGTGTGTGTATTGTATTTGTAACTGCG----T
GAGAACCCAGCTTCTGCTACTCATTAGTAACACCTATTTTGTCACATGAAATTGTAATAAGTTGATTCCACTCTATATCA
GTCATACTTGGGGTTGCGCTTACGACCATGTATCATCTTTTCTTTTTGGGTCAGCTGGATCTCCGCAACGCAGGTTGTAT
ATGGGTGTGTCAAGATCACGGAAGCGTGTGCCCTA---------------------------------ACTTCTAGCATG
ATTAGCTACACAAATAAACCAGCAAGGAAAAAGAGATAGAATAAGGGTGTGTCATCCAGCTTTTTAGGTATTTCTTTGTA
ACCGTGGCACCGCTACGATTCGTTCAGCTACATGGATAACTTTATTTAGCACAATACAGACACAGACACTCATAGTTACG
TGCATACACTCATTCTTATGAACACATACGCATACTTTATTCTATGAGCACCTAGGCATATCATCTTGAGATTGATGAAG
TCACCAAAAGCGCCTCGTAGTTGACGGAAATATCTCCTCCAATTGAACGCACATCGCCGGAAATCCCGAAACGAATTCAG
GAATAAATGCGAGCACTAGAACTTGACTAAGAAAATCTTATACGACATGATCGTATGGTTCATCTTAGTAGACCCCATTG
ATGAGCTGACACGTGGATTTACGAATGTCAAAGCAACAACAAAAAACAACGTCTTCTTCCCCACTACGAAATCGCCAAGT
CGATCAGAATTCCGCACGGCGCGGCAAGACGCGGAAGGACTTTTTTTTTCTATACTGACGCAGGTGGGGTGTGTGAGCGT
CTTCGGCCTGCGAATCTCACCGGAGATGGGCGACAAGCTGAAAGTTTCTCTTGAGGATGCCCGTTGGTTTACCACCGGAG
ATTAGCAAGACCGGTCGCTGGCTGGTTTGTGTTTTTTCTTTCAGGATGCTGGAGATGGTATTGTTCTACAGAACCACCGT
GAACACTTATGTTCCCTCCAGGTTCAGTTGGTCCTGCATCCCCGGGGCCCTGGCGAGCAGCAGAGTTGCACCGGCATGGA
GGATCCTCGCAACGACCGACAGGGGAACCACCGTAATTGTGCCGGCGTCGAGGAGTATGGCCGCGGCGACGAGAGCAAGC
ATTTGAAGTGTTGTGAACAGGGGGAAATCCGCGCCGGCGTCGAGGTGTGTGGCTGTACCGATGGCCGGCATGGTGCTAAC
ACCAGTGGCAGTCGGGATTTCACAACTGGGATTCAGACTTTCATAGAAGAAACTGCCTTACTGCTTTGAGATCCGTACTG
CCAGGTGTCACTCAACGGAGTGGGTCTCCAGATTAAAAGTACTCCGTATATGACCAGGTCACGTATGATTTTTTTTTTCC
ACAACTTGAACCCTGGTGGGTTAGGAATACCGTTGTCCACCTAATAAGCATCCAACCACAGGTTGTTTCAGCTACATGGA
TAACTTGAAGCTACAACATTGATCAATTCACGTTACGTTCATGCGCCCCAAGCACGCGGTGTCGTTGGTGTTCATGCCCG
TCGTGTTCAGCACCCACTCTGGTGTTGCCCTGGGCCGGTGGCCGTGCCATTGGCCTCGTGACTGATCTCCTCGCATTGCT
GTTGTGCGATGTATGCTGCACGC-----------
>chr6A_935
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------------------------------------------------------CCATGTATTCTACACAAGAAAACAAG
GAACCGCTAGTTGATTGAGCTGATGTTTGTTGCAGAGA-ATATGTCAGAAGAAATGTCAATGTTCGGACGAGCCGGTGTA
GGTAGAGATTCGGCGCACCCTGGACATCGAGAGATCCCTATTGAGCATGCTCCGCAAACCTCGATTGATGAGTTGTTGAA
GGTAATAAAAGGAGCCAATGGCATGCCGGTGCTGTTCATGCCCACCAGTGACGGCCGGCTGGCAGCAGTGGCCGTAGACG
GCCTTCAGAGTTTGATGCCCGCCAAACGCG---------------AGGGCAGCGACCCTGTCAAAAAGGAGGAGGAGGAT
TTCCGTGCCTGCTTGTTTGTCCTGACATCACTAGTTGCTACTGTCACCTTCGCCGCAGGGCTCACTCCACCCGGTGGCTT
CTGG---GCGGATGA---CAACGGG------TACGTGGCTGGTACCCCGATTATGCGAGATAAATTTAGCAGAAGGTACT
TCCTGTTTCAGTACTGCAACACATGCGCCTTCTTCACGTCCTTAC-GATCATTGCGTCGCTCGCCAAGAACTGGAATATC
GAGAAGATCATGACTATTCCATTCACATGCATTGTAGGAGTCTGTTTTCTGAGCATGGGAATTAGCTTTATCGCCGGCAC
GTGGAACAGCAACGC---CGGCCCCAAACAACTGTGGCCTGCCGTTTTTGTCCTTGCAATTAACATTGTCTACATGACGG
GGGATCGGATTAAGGAAATGTTTTCCGGTA--------------------------------------------------
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>chr4B_1100
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------------------------------------------------------------TCGATTGATGAGTTGCTGGC
GGTAATAAAAGGAGCCAATGGCATGCCGGTATTATTTATCCCCTCAGGCGACGGCCGACTGGCAGCGTTAGCTGTGGATG
GCCTTCAGAATCTGGTGCCTCCAGGAACAACAACCAGGAACGAAAAGGGCAATGGATCTGATGAAAAGAAGGAGCAGCCT
TTTCGTTCCTGGTTGTTGTTCCTTACGTCACTAGTTGCCACCATCACATTTACTGCGGGGCTCACCCCGCCCGGTGGTTT
CTAGTCCGCGGATGA---CAAGGTCAACGAATACGTCGCTGGTACCTCAATTATGCGTGACAAATTTAGAACGAGGTATA
CGATATTTAAAAGAAGCAACATGTTAGCTTTCTTCACGTCCTTGATGATCATTGGGTCGCTGGCTAAAAACAGGAATGAC
AAGAAACTCATGACTGTTCCTCTCCTATGCCTGGTCGGAGCATGTTTTATGAGCCTAGGAACAAGCTTTGTCAGCGGCAC
GTGG----------------------------------------------------------------------------
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>chr6A_1373
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-------------------------------------GCTGGTACCCCGATTATGCAAGACAAATTTCGCACAAGGCATT
ACTGGTTTCAGTGCTGCAACAAAACCGGCTTCTTCACGTCCTTGATGATCATCGCGTCACTCGCCAGGTACAGGTATAGC
AAGAAGATCATGACTGTTCCTTTCAGATGCCTTGTAGTACTTTGTTTTGTGAGCTTAGGAACTAGCTTTGTCACGGGCAC
GTGAGACACTGACATGAGCGCCACCTCGCAACTGACGTCTGTCATTT------------TTAACATTGTCTACATGACGT
GGGATCAGATTAAGGAAGAGTATTA---TAA---------GCTTTGTGGATCCCTCGATTAGTACTACGAG---------
-------------TAAGTTATGGCAAAGAAGAAGAGTTGCAGAAGAAACAA-AAGAAAAATCCTGAACAGCCTGCGTGCA
AACTTAGTA-ATGCCCTCATGGAGTCAATGGTAATTGTGGTGAACCCTGGT-------TTGTATTTGCAACTGCG----T
GAGAAGCTAGCTTTTGGTACCCATTAGTAACTCGTATTTTGTTACATGAAGTTGTAATAAGTTGATTCCTC-ATATGTCA
GTCAGACTTGAGG-------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--S-S----SS-------S------SS-------------------------------S---
-------------------------------S------------------------------------------------
----------------------------S---------------------------------------------------
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----------------------------------------------------------------------------S---
--------------------------------S-----------------------------------------------
----------------S---------------------------------------------------------------
-----------------------------------------------------------------S--------------
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-------S----------------------S----------------------------S--------------------
----S------------------------------------------------S--------------------------
-----S------------------------S------------------------S-------------------SSSS-
-----------------S-----------------------------------------------------------S--
---------S------------------S------------------------------------------------S--
-------------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
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---------------------------------------------------------------S-S--------------
--S--------------------------------------------------------SS-------------------
--S------------S------------------S--------S-------S-------S--S---S-------------
----------------S------------------S------------------------S-S--S--S--------S-S
S------S-----------------------SS---S-------S--------------------S----S---------
-------S-S---S---------------------S-------------------S------S-----------------
--S----------S----S-------------------------------------------S--------S--------
--------------------S--SSSSSSSSSSS
>forward_323
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---------------------------------------------------------------AGAGCGGTTGAGCCAAT
CAA-----------------------------------------------------------------------------
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>reverse_1740
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-----------------------------------------------------------CCAGTCGCTTAAGAGGTCCG-
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----------------------------------
