>input_sequence_71345
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----------------------------------------------------------------ATGTCGACGTCGTCGC
CGGCGAGCGGGGCCGCGTCGCCGGAGGCGGAGGGCGGCGGGGGCAGGAAGTACAAGGGCGTGCGGCGGCGCAAGTGGGGC
AAGTGGGTGTCGGAGATCCGGCTGCCCAACAGCCGGGAGCGCATCTGGCTGGGCTCCTACGACGCGCCCGAGAAGGCCGC
GCGCGCCTTCGACGCCGCCTTCGTCTGCCTCCGCGGGCCAGGCGCGGCCGGCGCCGACCTCAACTTCCCGGACTCGCCGC
CGCCGCCGTGCCGCCACAGCGTCGACCCGCAGGAGGTGCAGGCGGCCGCGCTCTCCCACGCCAACCGCGCCGCCGTCTCC
GCCCGGGAGGCCGCCGCGGCGCTCATGGACGTGGCCGACGACTGCTTCTCGCGGGCGCCGGCCGCGCTGTCTACGGACCA
GTGGTCCGTGACGCAGCCGTCGTGGGCGCAGCATGAGAACGGCGCCATGGACATTTTCGGCGACGAGGTGGCGGCCGCGC
CGGACGGCAGCATCGACTGGCGCTCGGTCATGGCGCACCAGCCGCCGCTCTTCTCGCCGACGGCCGGCTGGGGCAGCAAT
GCGTACGACTTCCTGCAGGTGACGCCGCCGCCGCCGCAGGGCGACGAGGACATGGAGGAGTGTGGCCATGGCGCCAGCGC
TTCCCTGTGGAGCTTTGACTCCCGAGACTCCTACTTCAGATACTAG----------------------------------
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>chr6D_1_TraesCS6D01G320700
AGTGCCAACCCGAGCATTGAGCGTGCCTTTGCAAGATTGTAAGAACAATGTTTCCTCTTTTAATTAATACAACTCTCTAT
TTAAAAAAAAACTTTTGTAATATAGATTTTTATAAGTCTGACATAATTTGGAACAACTCTACCACTTTCTTTGCGAAGGA
ACAACTCTAGCACTTTAAACATGCACCAGCACAAAAATATCATGCATGGTGGGTTTTCTATCAAGTGAGAGTAGACAC-C
ACTACATGATAATAATGTACTGTACAAAGATATTGAGTTTTTTTTTTCGTTTTGGAAACACCGAGTAATACGATGAGTTT
CAAGAGTAACAAACTCACCATAGGCGTCTTGCTATCGATGGGGC--CACTGACTTCCGCTTAAAAAT-A---TATTCACA
CATGTCATCAAATTTGGACTTTGATCCC-TCATGCCTTATTATTCTA-TAGTATAAGCACTGTAGAGCTTTGATTGACTT
TTTTGCAGT---ACGTAGAGTCAACCCAATTGTCTCTCGGCGTCATCAATGATCCTCCTCCTCCCTAAACCTTCAATAAT
TAGCTGGTACTGTATATGTCAAAAAAAAATCCGTGTACATTTTAGTACATGTCTCTAGAACCAAAGAGGCCCCAATTAGG
ACAGGAGAGATCCTGCAAGAGGACGACCGACTGCGGCCCCACCGAGCAGCCACACCAGGGATCTGCACGCGTTCGCCAAA
GCGATC-----CCTGCTAGCTGGCCCTACGACTCGCCACGTGGCCAGGACCATGCACGTCCCCGTCCGACGCGCCATTTC
CCGCGAGTCAACGCGCCGCGCGCGACCCCGGCGACGGTATAAAGCGGCCGCGCGCCAACACCATCAGCTCAGCTCCATCG
---ACAACGCAGCCAGCCAGCGGCCAACCC---TCGA-CGACGTACAGTGGCAGCAGCACGAGCAAGCTTCCATCGACGA
CGACGACGACAACGACTAGCTAGCTTCTCCCGGCTACCAGCTGAGCTGCTAGCTGACCAGCGTCATGTCGACGTCGTCGC
CGGCGAGCGGGGCCGCGTCGCCGGAGGCGGAGGGCGGCGGGGGCAGGAAGTACAAGGGCGTGCGGCGGCGCAAGTGGGGC
AAGTGGGTGTCGGAGATCCGGCTGCCCAACAGCCGGGAGCGCATCTGGCTGGGCTCCTACGACGCGCCCGAGAAGGCCGC
GCGCGCCTTCGACGCCGCCTTCGTCTGCCTCCGCGGGCCAGGCGCGGCCGGCGCCGACCTCAACTTCCCGGACTCGCCGC
CGCCGCCGTGCCGCCACAGCGTCGACCCGCAGGAGGTGCAGGCGGCCGCGCTCTCCCACGCCAACCGCGCCGCCGTCTCC
GCCCGGGAGGCCGCCGCGGCGCTCATGGACGTGGCCGACGACTGCTTCTCGCGGGCGCCGGCCGCGCTGTCTACGGACCA
GTGGTCCGTGACGCAGCCGTCGTGGGCGCAGCATGAGAACGGCGCCATGGACATTTTCGGCGACGAGGTGGCGGCCGCGC
CGGACGGCAGCATCGACTGGCGCTCGGTCATGGCGCACCAGCCGCCGCTCTTCTCGCCGACGGCCGGCTGGGGCAGCAAT
GCGTACGACTTCCTGCAGGTGACGCCGCCGCCGCCGCAGGGCGACGAGGACATGGAGGAGTGTGGCCATGGCGCCAGCGC
TTCCCTGTGGAGCTTTGACTCCCGAGACTCCTACTTCAGATACTAGTTTTCTTCTTCTTTTTACAGGTCTATACTTCATA
TACACTAT---TATAGTTAACATACTGTCACTGCTGCAGTTAACCTAAAACGTGCACAATTTCATCA-GGTGCATTGCAA
AGAGTATTACATTTGCATTGCTAGTTTTAACACTGTCTACAGACGCTTGTTTTTTCCTGTCTTATTTGTATCTTGCAAAC
GGAAAATGCAAAAGTGAAACAGAAAATTTGTATGGCCGCTTAAACAAAAG--AAGAAGATGTATATGGATGTACTACAAG
GTTACAGTTCATTTCAAATACAGTTTTGCTAAGTCTCAGTCGACCGAGACTTCGTTATGTCTCTATCGATGCTATATTCA
TTTGACTTTTGCATGGAGATTCGTACTAAA-TTTTTCTTTTCGGTTTTTCCATTTTGCTTCTTATATACTATATT---AC
TTGACTGAGACTTGGTTAAGTCTCAGTCGACCGAGACCTATCCACAACCTTTCAAATATCGCAAACAGCTCGCTACATCC
AAGTCCCTTGTCGAAATCAACATCATGAGCCGTCCTATGTTTTCGCGTTGAAGTTG------TGTAGAGAAGAAGGCAAC
CGAGACTAGATCAGACTGCTGCTAGTACCATTTACATAGACATCGAAATAGATGGACCCACGTACCCCAAGCTTTTCAAA
CAGCACGTTCAGCATTTTTTGTGATGTTTATTTTACTTAATT--------------------------------------
------------------------------------------------------------------ACCACAGGGCAACA
ATGTTCCGAGGGTTTACACAAGTAGTACTCCTATACAAGGAGGGAAGAAACAATTAC----TAGGCTGGAAGAAATATCA
CCCTGAG-CTAGCTAGATAAGGCAGAATAAACGTTACAATCTCTTGCAGCCAGGTGAAACAACATAC-TAGTGCACTGCT
GCCTGCTTTTCTTCAGAGGATCGACGATGATCTCGCGAAAAGAAAAGTCAAGGATGCTTTGTCTGGAGCAGAATTTTCCG
CTCTGATTGATGAACATATATGCACGGATATTCAAGGGTAGCTGCATGAGAT
>chr6B_81
TTAAA---------------------------------------------------------------------------
------AAAATATTTTGCAATATAGATTTTTATAAGTC-GAAATAATTTGGAACAACTCTACCGTTTTCTTTACGAAGGA
ACAACTCTAGCATTCTAAACATGCACCAGCACAAAAATATCATGCATGGTGGGTTTTCTATCAAGTGGAGAGTTGATAGC
ACTACGTGATAATAAAGTACTGTACAAAGATATCAAGTTG-TTTTTTTGTTTTGGAAATACCTAGTAATACGATGAGTTT
CAAGAGTAGCAAACTCACCGTAGGAGTCCTGCTATCGATGGGACCGCACTGGCTTCCACTTAAAAAT-ATACTATTCACA
CGTGTCATCAAATTTGGACTTTGAT-CC-TCATGCCTTATTATTCTA-TAGTATAAGCACTGTAGATCTTTGATTGACTT
TTTTGCAGAGCCACGGAGAGTCAACCCAATTGTCTCTCGGCGTCAGCAATGA------TCCTCCCTAAACCTTCAATAAG
TAGCTGGTATTTATACGTCACATTTTTTGCC---GTACATTTTAGTACATGTCTCTAGAACCAAAGAGGCCCCAATTAGG
ACAGG-----------AAGACGACGACCGACTGCGGCCCCACCGAGCAGCCACACCCGGGATCTGCACGCGTTGGCCAAA
GCGATCGATCCCGTGCTAGCTGGCCCTACGACTCGCCACGTGGCCAGGACCATGCACGTCCCCGTCCGACGCGCCATTTC
CCGCGAGTCAACGCGCCGCGCGCGACCCCGGCGACGGTATAAAGCGGCCGCGCGCCAGCACCATCAGCTCAGCTCCATCG
---GCAACGCAGCCAGCCAGCGTCTA--ACCCTTCGACCGACGTACAGCGGCAGCAGCACGAGCAAGCTTCCATCGG---
CGACGACGACGACTACTAGCTAGCTTCTCCCGGCCACCAGCTGAGCTGCTAGCTGACCGGCGGCATGTCGACGTCGTCGC
CGGCGAGCGGGGCCGCGTCGCCGGAGGCGGAGGGCGGCGGGGGCAGGAAGTACAAGGGCGTGCGGCGGCGCAAGTGGGGC
AAGTGGGTGTCGGAGATCCGGCTGCCCAACAGCCGGGAGCGCATCTGGCTGGGCTCCTACGACGCGCCCGAGAAGGCCGC
GCGCGCCTTCGACGCCGCCTTCGTCTGCCTCCGCGGGCCCGGGGCCGCCGGCGCCGACCTCAACTTCCCGGACTCGCCGC
CGCCGCCGTGCCGCCACAGCGTCGACCCGCAGGAGGTGCAGGCGGCCGCGCTCTCCCACGCCAACCGCGCCACAGTCTCG
GCCCGGGAGGCGGCCGCCGCGCTCATGGACGTGGCCGACGACTGCTTCTCGCGGGCGCCGGCCGCGCTGTCGATGGAGCA
GTGGCCCGTGACGCAGCCGTCGTGGCCGCAGCATGAGAATGGCGCCATGGACATTTTCGGCGGCGAGGTGGCGGCCGCGC
CGGACGGCAGCATCGACTGGCGCTCGGTCATGGCGCACCAGCCGCCGCTCTTCTCGCCGACGGCCGGCTGGGGCAGCAAT
GCGTACGACTTCCTGCAGGTGACGCCGCCGCCGACGCAGGGCGACGAGGACATGGAGGAGTGTGGCCATGGCGCCAGCGC
TTCCCTGTGGAGCTTTGACTCCCGAGACTCATACTTCAGATACTAGTTTTCTTCTTCTTTTTACAGGTCTGTACTTCATA
GTATATAATACTATAGTTAACATACTGTCACTGCTGCAGTTAACCTAAA-CGTGCAAAATTTCAACA-GGTGCATTGCAA
AGAGTATTACATTTGCATTGCTAGTTTTAACACTGCCTATAGACGGGT-TTTTTCCCTGTCTTATTTGTATCTTGCAAAC
GGAAAATGCAAAAGTGAAACAGAGAATTTGTATGGC-GCTTAAAAAGAAG--AAGAAAATGTATATGGATGTACTACAAG
GTTACAGTTCATTTCAAATACAGTTCTGCTAAGTCTCACTCGACTGAGACTTCGTTATGTCTCTGTCGATGCTATATTCC
TTTGATCTTGCATGG----TTCGTACTAAAATTTTTGTTTCCAGTTTTTCCTTTTTTCTTCTTATATACTAGTAAATCAC
TTGACTGAGACTTGGTTAAGTTTTAATGGACTGAAACCTATCCACAACCTTTCAAATATCGCAAACAACTCGCTACATCC
AAGTCCCTTGTGTAAGTCAACATCATGAGCCGTCCTATGTTTTCGCGTTGAGTTGTCTAGACTCTAGAGAAGAAGGCAAC
CGAGATTAGATCAGACTGCTGCTAGTACCATTT---TAGACATCAAAATAGATGGACCCACGTACC-CAAGCTTTTCAAA
CAGCACGTTCAGCATTTTTTGCGATGTCTATTTTACTTAATT--------------------------------------
------------------------------------------------------------------ATCACAGAGCAACA
ATGTTCCGATGGTTTACACAAGTAGTACTCCAACACAAGGAGGGAAGAAACAATTACTAGCTAGGCTGGAAGAAATAGCA
ACCTG-----AGCTAGATAAAGCAGAATAAACGTTACAATCTCTCGCAGCCAGGTGAAACAACATAC-TAGTGCACTGCT
GCCTACTTTTCTTCAGACGATCGACGACGATCTCGCGAAAAGAAAAGTCAAGGATGCTTTGTCTGGTACAAAAAAATTCG
CTCTGATTGATCAACATATATGCACGGATATTCAAGTGTAGCTGCATGAGAT
>chr6A_319
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-------------------------------------------------------------------------------T
CAAGAGTAACAAATTCACCATAAGTGTCTTGCTATCGATGGGAC--CACTGGCTCCCACGTAGTAAAAA---TATTCACA
CATGTCATCAAATTTGGACTTTGAT-CCCTCGTGCCTCATTATTCTAGTAGCATAAGCACTGTAGAGCTTTGATTGACTT
CTTTGCAGAAGCACGGAGAGTCAGCCCTGTTGTCTCCCGGCGTCAGCAATGA------TCCTGCCTAAACCTTCAATAAT
TAGCTGGCACTGTATATGTCAAA--AAAATTCGTGTACATTTTAGTGCAGGTCTCTAGAACCAGAGAGGCCCCAATTAGG
ACAGG-----------AAGACGACGACCGACTGCGGCCCCACCGAGCAGCCACACCCGGGATC-GCACGCGTAGCCAAAG
-----CGATCCCCTGCTAGCTGGCCCTACGACTCGCCACGTGGCCAGGACCATGCACGTCCCCGTCCGACGCGCCATTTC
CCGCGAGTCAACGCGCCGCGCGCGGCCCCGGCGACGGTATAAAGCGGCCGCTCGCCAACACCATCAGCTCAGCTCCATCG
GCAGCAACGCAGCCAGCCAGCGGCTACTACCCTTCGA-CGACCTACAGCAGCAGCAGCACGAGCAGGCTTCCATCG---A
CGACGACGACGACGACTAGCTAGCTTCTTCCGGACAGCTTC-------------------CGGCATGTCGACGTTGTCGC
CGGTGAGCGGGGCCGCGTCGCCGGAGGCGGAGGGTGGCGGGGGCAGGAAGTACAAGGGCGTGCGGCGGCGCAAGTGGGGC
AAGTGGGTGTCGGAGATCCGGCTGCCCAACAGCCGGGAGCGCATCTGGCTGGGCTCCTACGACGCGCCCGAGAAGGCCGC
GCGCGCCTTCGACGCCGCCTTCGTCTGCCTCCGCGGGCCCGGCGCCGCCGGCGCGGACCTCAACTTCCCGGACTCGCCGC
CCCCGCCGTGCCGCCACAGCGTCGACCCGCAGGAGGTGCAGGCGGCCGCGCTCTCCCACGCCAACCGCGCCGCCGTCTCG
GTCAGGGAGGCGGCCGCGGCTCTCATGGAGGACGA---------CTGCTCGCGGGCGCCGGCCGCGCTGTCGACGGAGCA
GTGGCCCGTGACGCAGCCGTCGTGGGCGCAGCATGACAGCGG---CATGGACATTTTCGGCGACGAGGTGGCGGCCGCGC
CGGACGGCAGCATGGACTGGCGCTCGGTCATGGCGCACCAGCCGCCGCTCTTCTCGCCGACGGCCGGCTGGGGCAGCAAT
GCGTACGACTTCCTGCAGCTGACGCCGCCGCCGACGCAGGGCGACGAGGACATGGAGGAGTGTGGCCATGGCGCCAGCGC
TTCCCTGTGGAGCTTTGACTCCCGAGACTCCTACTTCAGATACTAGTTC---TCTTCTTTTTACGGGTCTATACATCATA
GTATAA---ACTATAGTTAACATACTTTCACTGCTGCAGTTAACCTAAA-CGTGCAGAATTTCATCAGGGTGCATTGCAA
AGAGTATTACAATTGCATTGCCTGTTTTAACACTGTCTACAGCCGCTCTCCCCCCGCCA---TATTTGTATCTTGCAAGC
GGATAATGCAAAAGTGAAGCTGAAAAATTGTATTGCCGCTTAAAGAAAATAAAAGAAAATGTATATGGATGTACTACCAA
GGTCAC--------------------------------------------------------------------------
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-AGTCCCTTGTCTAAGTCAACATCATGAGCCGTCCTATGTTTTCGCGTTGAGA-TG------TCTAGAGAAGAAGGCAAC
CGAGATTAGATCAGAC--------GTACGATTGACATAGACATCAAAATAGATGGACCCCCATA-C-CAAGCTTTTCAAA
CAGCACATTCAACATTTTTTGCTATATTCGTGAGATCTCATGTCAAGATACATGTAAAAAAAATTATCGATTTTTTGTAT
GTTTTGTCACTTGAGTATGACTTAATTAAATCTCAGTTGATTGAGATCTAGCCGCGCTCTTACTTAATTACAGGGCAACA
ATGCTC-------------------------TACACAAGGAGGGAAGAAACAATTAC----AAGGGTGGAAGAAACAGCA
CCCCGAGACTAGCTAGATGGGGCAGAATAAACGTTGCAATCTC--GCAGCCAGGTGAAACAACATATATAGTGCACTGCT
GCCTACTTTTCTTCAGAGGATCGGCGACGACTTCGCGAGAAGAAAAGTCAAGGATGCTTTGTCTGGAACAAAAAATCTCG
CTCTGATTGATGAAAATATATGCAGGGGTATTCAAGGGTAGCTGCATGAGA-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----SS-----S--------------------S--S---------------------SS-------S-------
------------S-S----------------------------------------------------SSSSSSSSSSS--
-----S---------S-----------------SS----SS------S----------S---S-----------------
------------------------S-----------------S--------S-----S----------------------
-------------------------S------------------------------------------------------
--------S------S-----------------------------S------SSSSSS----------------------
-----------------------SS-------------------------------------------------------
-----SSSSSSSSSSS----S-----------------------------------S----------------S------
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---S--------------------S-SSS-------------------S---------------------------SSS-
----------S-----------------------S-----------------------S---S-----------------
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---------------------------------------S-----S----------------------------------
-------------------------------------------------------------------------------S
-----------S-----------------------------------------------------------S-----S--
----S---------------------------------------------------------------------------
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---------------------------------S----------------------------------------------
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SSSSS--S-----------------------------------------S------S-----------------------
------------------------------------------------S-----S-------------------------
--------------------------------------------S------------S----------------------
-------------------------S------------S-----S-------------------S--------------S
-----SS--SSSSS-SSSS-----------------S---S-S--------S----S--------------SSSS-----
---------------------S-S-S-S---S--S--------------------------------S------------
------------S--S-----------------------------------SS----------S----------------
-----S--------------------------------------S---------------------S-------------
---------------------S----------------------------------------------------------
-------------------------------------------------------------------S------------
---------S-----------------------S-------------------------------------------S--
--------------------------------------------S-----------------------------------
----S----------------------S---------------------------------------S--S--SS--S--
----------------------------------------------------
>forward_647
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-------------------------------------------------------------------GGCCCCAATTAGG
ACAGGAG-------------------------------------------------------------------------
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>reverse_2548
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-------------------------------------------------------------------CCACAGGGCAACA
ATGTTCC-------------------------------------------------------------------------
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