>input_sequence_71332
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---------------------------------------------------------ATGGCGTCCCTCCCCTCTTCTTC
CGTCCTCCTCCCTGTCCTCATCCTCATCCTCGTCGCTGCTGCGACCGACGCGGCGACC-TTCACCGTCATCAACAAGTGC
CAGTACACGGTGTGGGCGGCGGCGGTGCCGGCCGGCGGGGGCAGGCAGCTGGACGC---GGGGCAGACGTGGAGCATCAA
CGTGCCGGCCGGCACGACGGGCGGGCGGGTGTGGGCGCGCACGGGGTGCAGCTTCGACGGCGCCGGCAACGGGCGGTGCC
AGACGGGCGACTGCGGCGGCAAGCTGCAGTGCACGCAGTACGGGCAGGCGCCCAACACGCTGGCCGAGTTCGGGCTCAAC
AAGTACATGAACCTCGACTTCTTCGACATCTCCCTCATCGACGGGTACAACGTGCCCATGTCGTTCCTGCCGGCCCCCGG
CTCCCCCGGGTGCCCCAAGGGCGGGCCTCAGTGCCCCAGGGTGATCACGCCGCAGTGCCCCAACGAGCTGCGGGCCGCCG
GAGGGTGCAACAACGCGTGCACGGTGTTCAAGGAGGACCGGTACTGCTGCACCGGGTCGGCGGCCAACAACTGCGGGCCG
ACCGACTACTCGAGGTTCTTCAAGGGCCAGTGCTCCGACGCCTACAGCTACCCCAAGGACGACGCCACCAGCACCTACAC
CTGCCCCGGCGGCACCAACTACCAGGTCATCTTCTGCCCATGA-------------------------------------
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>chr4D_1_TraesCS4D01G015800
AGTTTGAAGCCTCCTATCGGTTGCGATGGGTTGATTAGATTGACTAGATAGGTTGTGATACCATGAAAATAATAATGTCA
TGTGAGATAAAAATATGTGTTGTGATATAACAACAAGCTTAATGAGTTACTCATGAAACTCGATAGCTCATTCATTAAGC
TTGTTAAGTCAAACGAATTGGCCACAGTGACTGGCGATGTTCACTAAAAAGCAAGTTAGGAACTTAACTAGCTGAGCTAT
CGAGTGCTCCTTAAACTCACCAGCTACAAGCATACCAGGATAAAGGTACATGCCATTTCTAAAAAAAACACCTGACATAC
ATTCCATTTTAATTAATATCTGAAATATTCTCGGAAGACAAATCCGTACATCAACGAACTGGGCATAACTTAGATGGCTA
GGTTCCTTATGGTTGAATTTGCCCATTCTAGTTCAAGTCCTAAATTTGACACCGGTGGTCGCAATTTTCTGAATTTATTC
CAATTTTTCCAGCAATATTTGTTTAGCGGCATGGTGTGCCTGTCGACTCTGAAACGTCTGTGGCGACTTCTTCAATCTCA
AAATTTGTCGGCTTAACTTCTGAAAGGTTCACACAGAGGTAGGATGTGTGTGTGGACGCGTGCGTCTATACTATGTTTCT
CAAAAAAGAAAAATCGGCACATCAACTTTGAGTCAGAGGGAATTCCATGTGACGGGAAAGAATTCCACACA--CACAAAG
AATAACCCACTTGTAAACAAACTATGTCTCCATCGG-TCGTGCTGTACTTCCCCAAAATTCACCAAGCATGCGTAGT---
--CCGGTGGTGGCCTGAGTC----TCAGCGGCGACATCACTGGTGTCCTGTGGCCTAACCGCTTGCTCGTTAGCTGCCAA
AGCAACCACGTCGAGAAGCTGC-AAAAGTTGAATTCAACTCTTTCTGACACTATAAATTTCGACCCAATCGAACACCATT
CTTCCTCACCACAACAACACTTAAGCTCTACTAAG----GGGAGAGGAGAGAACACGATGGCGTCCCTCCCCTCTTCTTC
CGTCCTCCTCCCTGTCCTCATCCTCATCCTCGTCGCTGCTGCGACCGACGCGGCGACC-TTCACCGTCATCAACAAGTGC
CAGTACACGGTGTGGGCGGCGGCGGTGCCGGCCGGCGGGGGCAGGCAGCTGGACGC---GGGGCAGACGTGGAGCATCAA
CGTGCCGGCCGGCACGACGGGCGGGCGGGTGTGGGCGCGCACGGGGTGCAGCTTCGACGGCGCCGGCAACGGGCGGTGCC
AGACGGGCGACTGCGGCGGCAAGCTGCAGTGCACGCAGTACGGGCAGGCGCCCAACACGCTGGCCGAGTTCGGGCTCAAC
AAGTACATGAACCTCGACTTCTTCGACATCTCCCTCATCGACGGGTACAACGTGCCCATGTCGTTCCTGCCGGCCCCCGG
CTCCCCCGGGTGCCCCAAGGGCGGGCCTCAGTGCCCCAGGGTGATCACGCCGCAGTGCCCCAACGAGCTGCGGGCCGCCG
GAGGGTGCAACAACGCGTGCACGGTGTTCAAGGAGGACCGGTACTGCTGCACCGGGTCGGCGGCCAACAACTGCGGGCCG
ACCGACTACTCGAGGTTCTTCAAGGGCCAGTGCTCCGACGCCTACAGCTACCCCAAGGACGACGCCACCAGCACCTACAC
CTGCCCCGGCGGCACCAACTACCAGGTCATCTTCTGCCCATGATCGAGCTAAAACTAGGCAGCCATTGAAGCGGTCTCGA
TCGAGCACACAGAAATTGCTAAAAAGATTTGAGAGGGCTATTTACTATATTTTCCAAGTCCAACCGAATATACATCAAAT
TTCAGTAAACAAGGGATAAAATATCACAATCGTCAGCCACATGCATGCATGCTCTTGTAGATATCTACTAGATGGCCACA
TTGCCCAATTGTAGATATGCCGTGCGACGTCGGCGTAACAAGTATACGTACTAGTAGGAGGCCAGCTAGCACTGGATCCA
TATCTTCTTGAGAGCTCCATCCGCATCCAATACTCAATGCCATTCAGTTGACGTAGAATAAATGGTCACACGGGCCAGAA
GACGCCGCCGATATTGAACGGCTGGCTGGAAGATAATGCAACGACTCTTGGAAAAATCCTTGTAGAAGCTATCCTTGTTT
GACCAATTATGATACAGTGTATCCACGGGCTGCGTACTTCCACACGCGGTATTTCTACGTGTTCTCTTGTCTTGTTTCCA
TCTCTACACGCTTTCTACGTGTTAGATCGTTTTTCTGGTCCTGGCTGGAACCCTAGCCGCCGCCAGGAGATTGTTTTTAT
TCCCTTGTAGTCTAGGTGTTTAGGCTGTTCATCGTCTTAGCTTCGGCTGCGACAAAGACGGCGCTGAATAAAGATTCTTC
GGATCCTTCCCTGACGAGGTCATCGGTCCTATGATTGGGGATGGATTTGAAAATCAGTGTGTTCAAGCAAGGATGGCGTG
GCGGCGGCGGCATCCTCGTGGTGGACCTATGTCCTCGGGCTCCGCCATTGCGACGACGTTTGCTCCAGCGTCGGCGCGGA
GCTTGGGAGGTAGTCCAGGAGCGGATGCAGATTGTGGTCTGCATCAACGACATCTGAAAGACGAAACGTGTGCTGGCTTC
GTGGTTCGTGGATGGCAGGTGTGGTTTCCTCCTTCGACGTCTTAGTCGTGGTGGGGTGCCAGATCTAGAGTTCGATGGCG
CGT
>chr4A_677
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------------------------------------AGGGAATTCCATGGGACGGGAAAGAATTCCACACAAACACAAAG
ACTAACCCACTTGTGAACAAGCTATGTCTCCATCAGATCGTGCTGTACTGCCCCCAAATTCAGCAAGCATGCGTAGCGTA
GCCCGGTGGTGGCCTGAGTCGATCTCAGCGGCGTGGTCTCTTGTGTGCTGTGGCCTAACCGCTTGCCCGTGAGCTGCCAA
AGCAACCCCATCGAGAAGCTGCAAAAAGTTGAATTCAA-TCCTTCTGACGCTATAAATATCGACCCAATCGATCGAACTC
------CACCACAAGAACACTTAAGCTCCACTACAACAAGGGAGAGGAGAGAACACGATGGCCA---------CTTCATC
AGTCCTCCTCCCTGTGCTCCTCCTGGTGGC---CGTCGCCGGCGCGGAGGCGGCGACC-TTCACGGTGATCAACAAGTGC
CAGTACACGGTGTGGGCGGCGGCGGTGCCGGCCGGCGGGGGCAGGAAGCTGGACGC---GGGGCAGACGTGGAGCATAGA
CGTGCCGGCGGGCACGACGAGCGGGCGGGTGTGGGCGCGCACGGGGTGCAGCTTCGACGGCGCCGGCAACGGGCGGTGCC
AGACGGGGGACTGCGGCGGGAAGCTGCAGTGCACGCAGTACGGGCAGGCGCCCAACACGCTGGCGGAGTTCGGGCTGAAC
AAGTACATGGGCCAGGACTTCTTCGACATCTCCCTCATCGACGGGTTCAACGTGCCCATGTCGTTCGTGCCAGCACCCGG
CACCTCCGGGTGCCCCAAGGGCGGGCCGCGGTGCCCGAGGGTGATCACGCCGCAGTGCCCCAGCGAGCTGCGGGCCGCCG
GAGGGTGCAACAACGCGTGCACGGTGTTCAAGGAGGACCGGTACTGCTGCACAGGGTCGGCGGCCAACAACTGCGGGCCG
ACGGACTACTCGAGGTTCTTCAAGGGGCAGTGCTCCGACGCCTACAGCTACCCCAAGGACGACGCCACCAGCATCTTCAC
CTGCCCCGGCGGCACCAACTACCAGGTCATCTTCTGCCCATGA-------------------------------------
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>chr4A_1050
TCCTC---------------------------------------------------------------------------
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----------------------------------GTTGCCGGCACCCACGCCGCCACGATTCACCATCACCAACAAGTGC
CAATTCACCGCGTGGGCGGCCGCCGTGCCGTCCGGCGGTGGCAAGCAGCTGGACCCCGGGGCGCAGCCATGGAGCATCGA
GGTGCCGGCGGGCACGACCGGCGGGCGCGTGTGGGCGCGCACGGGGTGCAACTTCGACGGGAGCGACAACGGGAAATGCC
AGACGGGGGACTGCGGCGGCGTGCTGTAGTGCACGGGGTACGGGCAGGCACCCAACACGCTGGCCGAGTTCGGGCTGAAC
GGCTTCAACAACCTCGACTTCTTCGACATCTCCCTCATCGACGGCTTCAACGTGCCCATGGACTTCTTGCCGGCGGACGG
CACCGCCGGGTGCGCCAAGGGCGGGTCGCGGTGCGATGCTGACATCACGTCGCAGTGCCTGTCCGAGCTCCGTGCACCCG
GCGGGGGCAACAACGCGTGCACGGTGTTCAAGAAGGATGAGTACTGCTGCACTGGCACGGCAGCAGACAACTGCGGGCCG
ACCGACTATTCCAAGTTCTTCAAGGGGCAGTGCCCGGACGCGTACAGCTACCCCAAGGATGACGCCTCCAGCACCTTCAC
TTGCCCCGGAGGCACCAACTACCAGGTCGTCTTCTGCCCATGATC-----------------------------------
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>chr4D_1052
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----------------------------CTCCTCGCTGCCGGCACCCACGCCGCCACG-TTCACCATCACCAACAAGTGC
CAGTTCACCGTGTGGGCGGCGGCCGTGCCGTCCGGCGGTGGCAAGCAGCTGGACCCGGGGGCGCAGCCATGGAGCATCGA
GGTGCCGGCGGGCACGACGGGCGGGCGCGTGTGGGCGCGCACGGGGTGCAACTTCGACGGGAGCGGCAACGGGCAGTGCC
AGACGGGGGACTGCGGCGGCGTGCTGCAGTGCACGGGGTACGGGCAGGCGCCCAACACGCTGGCCGAGTTCGGGCTGAAT
AAGTACATGGGCCAAGACTTCATCGACATCTCTGTCATCGACGGCTTTAACGTGCCCATGGACTTTCTGCCGGCCGACGG
CACAGCCGGGTGCGCCAAGGGCGGGCCGCGGTGCGACGCGGACATCACGTCACAGTGCCCGTCCGAGCTCCGGGCACCCG
GCGGGTGCAACAACGCGTGCACGGTGTTCAAGAAGGACGAGTACTGCTGCACCGGCACGGCGGCGGACAACTGCGGGCCG
ACCGACTACTCGAGGTTCTTCAAGGGCCAGTGCCCGGACGCCTACAGCTACCCCAAGGATGATGCCACCAGCATCTTCAC
TTGCCCCGGCGGCACCAACTACCAGGTCGTCTTCTGCCCATGATC-----------------------------------
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>chr4B_1200
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--------------------GCGGCCGCGTGTGGGCGCGCACGGGGTGCAGCTTCGACGGCGCGGGCAACGGGCGGTGCC
AGACGGGGGACTGCGGCGGGAAGCTACAGTGCATGCAGTACGGGCAGGCGCCCAACACGCTGGCCGAGTTCGGGCTCAAC
AAGTACATGGGCCAGGACTTCTTCGACATCTCCCTGATCGACGGGTTCAACGTGCCCATGTCATTCATCCCCGTCCCCGG
CTCCCCCGGGTGCCCCAAGGGCGGGCCGCGGTGCCCCCGGGTGATCGCGCCGCAGTGCCCCAACGAGCTGCGGGCCGCCG
GAGGGTGCAACAACGCATGCACGGTGTTCAAGGAGGACAGGTACTGCTGCACCGGGTCGGCAGCGAACAACTGCGGGCCG
ACCAACTACTCGAGGTTCTTCAAGGGGCAGTGCTCCGACGCCTACAGCTACCCTAAGGGCGATGCCACCAGCATCTTCAC
CTGCCCCGGCGGCACCAACTACCAGGTCATCTTCTGCCCATGA-------------------------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S------------------------------
-S------------S-----S-------------S--------------S----S-------S-------------S---
---------------------------------SSS--S--S----S-------------------S---S---------
-------S-S----------------------------S--S-------S--------S-------------S-SSSS-S
SSSSSS--------S-------------S----SS---------------------------SSSSSSSSSSS----S--
S--------------S---S----SS-S---S-------S-SS-------------------------------------
------------------------------------------------------------------------------S-
---------S----------------------------------------------------------------------
-------S------------------------------------------------------------------------
----------------------------------------------S---------------------------------
---------------------------S-S--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_533
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---------------------------------GTGTGCCTGTCGACTCTGAA---------------------------
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>reverse_2493
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------------TCCTCGTGGTGGACCTATGT------------------------------------------------
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