>input_sequence_71331
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-----------------------------------------------------------GCCAGTCTTGCTCAGCCACTC
TTAATTTCT---------------ACTACCAGCCAAGTTTTGTGACAGCAGAGACCGATCGAGCCGAGCCGAGCAGCGCG
ATGGAGAAGCTGACGCCGAGCAACGCGAAGAAGGCGATGGAGGACAGGGAGGAGAAGCCCAAGGTGCCGTCGACCGACCC
GGACGACAACCTCGACGACCTCGCCGCCGGGCAGCGGCAGCCGCAGCTGCAGAGGGAGCACCAG------GCGCCCAACA
TCTCGGAGATGAAGCCGATGACGCGGGAGGCATACGGCGGCGGGATGTACGCGGCGGAGGAGGGCCGGAGGGAGCCCGGG
AAGCCGCGGGCCAGCGCCACGCAGAGCGCCGACGGGCCGGAGGAGCCCGTGGCCAAGCCCAGGCACCCGCCGCCGCCGTC
CACCGGCGACCGCGACCTCGACATCACCGGCATGTCCTACATCCAGTAGGCGGTAGTAGCTAGCTTCTCTTCCTCCTTTT
GCGTGCCCGTGTGTTTGGGGCGTGTGCTAGAGCCTAGAGCGGCCGTTCGTTGTGTTCTCCCTTTTTGTGCATGGACTGAT
TTCTGAATAAGATGTGAGCGCGAGTTTTCTTCGCCCGTCGGCCCTGGCCGTTGTCACCGACTATGGTCGGTCACTAGCCG
GCATAGAGTATGGAAGGTCGCGGTACGAATGAAATGAACCTCTCTGACGGTACACGTTGCAC------------------
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>chr4B_1_TraesCS4B01G329300
GCTCTAGCAGAAGACCTAGCACTCCACAACTTCATCATTGCATGTGATGCTAAGCAGGTAGTGGAGGACATCAACAAGAA
CGCTAGTGGCACTTATGACACGATCATTCAAGAAATCAGAAAGAGGGCAGAGAGTTTTAATAGCAATATTTTGTATGAAG
GACGCCAATCTAATAACGATGCGCATAGCTTAGCAAAATACTCTCTAAGGCTAGCTCAGGGGCGCCAATTGTGGCTGTTA
CACCCCCACGATCCAGCATGTATCCCACAAACTGTGGTTTTTGATGAATAAAATTTCTGTTCATCCCTAAAAAAAAGTAA
TGATTTTCTCACTTGTCAAAAGGAAAAAAACTTGCCGCTACAGTTCACTTAAAATGACTGATATGTTGTGCAAAGCGGCC
ACTTTCAAGACAGCCATTTTTTCCACTTTCAAGACAGTCTCTCGGAGGTGCTCACAAGGCTAGGATATGCGTGTGTGCGT
TCATGACGGTGAGTGTATACATTTATGTATGAGCGCTTACGTCTGTACTGATGTTAAAAAGAAAAAGACAACCATTTTTT
CTTCACTTCACATGTATGTCGACGCGGTCCTCCTCCGGCCCGAAGTAGTTGCATTTCGTGGCGAAGTTCGCCAATCCAAG
CACGGCACAAGGATGCTCAGTTGCTCACCTATCC--ATGCGCAGGCACATGCAGCTCTATCCACAAGCCTTGCTGCTTTT
GTCGCCGGCCGTGACGTCCACGAGTCACCCTTCGCCGCCGCGCGAGGTACCGACCAGCCCAGGTGTGCGCCGCGCGGGGG
TACCACGCAGCCAACCGTACCACAGCGCCCACAGCCAGCGCTCGCCCG------------GCCTACAGGCGACACGCGTT
GCCC-CCACTGCGCAGCACGCAGGCAGTGCACGCACACGAACATCGCGAGTCTTCCTCCCGATCCATGCATCATCGATCC
AATCC----AATCCAACGCTTACCTATAAAAGCAAGCCCGCCTGAACCATCACTTCACTGCCAGTCTTGCTCAGCCACTC
TTAATTTCT---------------ACTACCAGCCAAGTTTTGTGACAGCAGAGACCGATCGAGCCGAGCCGAGCAGCGCG
ATGGAGAAGCTGACGCCGAGCAACGCGAAGAAGGCGATGGAGGACAGGGAGGAGAAGCCCAAGGTGCCGTCGACCGACCC
GGACGACAACCTCGACGACCTCGCCGCCGGGCAGCGGCAGCCGCAGCTGCAGAGGGAGCACCAG------GCGCCCAACA
TCTCGGAGATGAAGCCGATGACGCGGGAGGCATACGGCGGCGGGATGTACGCGGCGGAGGAGGGCCGGAGGGAGCCCGGG
AAGCCGCGGGCCAGCGCCACGCAGAGCGCCGACGGGCCGGAGGAGCCCGTGGCCAAGCCCAGGCACCCGCCGCCGCCGTC
CACCGGCGACCGCGACCTCGACATCACCGGCATGTCCTACATCCAGTAGGCGGTAGTAGCTAGCTTCTCTTCCTCCTTTT
GCGTGCCCGTGTGTTTGGGGCGTGTGCTAGAGCCTAGAGCGGCCGTTCGTTGTGTTCTCCCTTTTTGTGCATGGACTGAT
TTCTGAATAAGATGTGAGCGCGAGTTTTCTTCGCCCGTCGGCCCTGGCCGTTGTCACCGACTATGGTCGGTCACTAGCCG
GCATAGAGTATGGAAGGTCGCGGTACGAATGAAATGAACCTCTCTGACGGTACACGTTGCACGAAATATGACGCTCCTAT
GTCTCGGTGCACTGAAGCGCAAGTCGATTCATCCACCGCATCTTTGTCTTCCTCATCGTAGTTGTGCGCTCATAACACCG
CCGCCGCCGCCATCCCGCCAAACCTCGTTCTAGGGCGCCGGCCGGCGACCGCACCCGGTGCTCAGACTATAAATCTTTTG
TGCCATGGGCGCTCCGACCGTCGCCTGAAAAATACTACTGCCTCACTTCTAAATTAAGTGTCCTGAAAAAAAAATACTCC
ATTAAATTAAGTGTCCTGAAGAATAGAGTACTACTGCATCCATTTAAAATTAAATGTCGCTGATTCATTACAACTTGCTG
CCGACACTTTATTTGAAACGAGGGGATTGGAGTGGCTCGACTTCCGGATGGTCGAATGAAGAATGGTATTTTTTTTTACT
CTCTTCTAATTTTTTTGGACGTGCCCGCTAGAGCTCCTGGGCGGCCTGCCTTTTTCTAAATAATGTGCGTAGCGCGCTAA
AAAGGACACTGCTAATTAATCCTTCTTGGTGATCTTTTATACATTAATTTTTGGTTTTTATGTCTGTGCGTTGCAACGGG
A--AAGAAAATAAATTTATATTCATATTTAGTTTGGTTTTTATGTGCAAAAACACATTAACAGGTAATGCAAT-ATTTAG
TTAAAATTAAAATTGTTTAAAAGATCTAAATTTGTTTCAGGAGAAAATGCTAATCTTATAAAATATTTCTTTACCTGCCT
TAACATATAATAAAATGGAGTTAGGAACATGATAAAGTTTAGTCATTTTTAG----------------------------
--------------------------------------------------------------------TAGTGTGGATGC
ACATTCACATTCAATGGAGGTGGTCTATTTGAGTTTTTTCTATATG--------TATCTTATAAATACCGTACCAAAAGC
AATAAAATAGCATTGGGGGCTCTACACGTTCCTTGTTAAAAACAAAGTGATCTATGTGTAAGACTGGAGGAACCCTTTCA
TTTTAGGATGGAAACTGCAATATATGTACTAATTTATATCTAGGACACA
>chr4D_315
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--------------------------------------------------------------------------AAGTAA
TGATTTTCTCACTTGTCAAAAGAAAAAAAACTTGCCGCTACAGTTCAGTTAAAATGACTGATGTGTTGTGCAAAGCGGCC
ACTTTCAAGACAGCCATTTTTTTCATTTTCAAGACAATCTTCCGAAGGTGCTCATAGAGATAGGGCGT--GTGTGTGCGT
TTATAAGGGTGAGTGTATACACGTATATATGAGCGCTTACGTCTGTACTGATGTTAAAAAAAAACAGCCA-----TTTTT
TTTCACTTCACA----TGTCGACGCGGTCCTCCTCCGGCCCGAAGTAGTTGCATTTCGTGGCGAAGCTCGCCAATCCAAG
CACGGCACAAGGATC--------CTCACCTATCCATGC------------GCAGCTCTATCCACAAGCATTGCTGCTTTT
GTCGCCG----TGGCGTCCACGAGTCACGCTTGGCCGCCGCGCGAGGCACCGACCAGCCCACGTGTTCGCCGC-------
--------------CCGTACCACGGCGCCAACAGCCAGCGCTCGCCCGATCCAATCCAACGCCCACAGGCGACACGCGTC
GCCCTCCGCGGCGCAGCACGCAAGCAGTGCACGCACTCGAACTTCGCGAGTCTTCCTCCCGATCCATGCATCATCGATCC
AATCCATCCAATCCAACGCGTACCTATAAAAGCAAGCCCGCCCGAACCACCACTCCCA---CAGTCTTCCTCAGCCACTG
TTAATTTCTGCAGCCGGAGATAATACTAC-AAGCCAAGCTTGCTACATCAGAGACCGATCGTGCCGAGCGGA-----GCG
ATGGAGAAGCTGACGCCGAGCAACGCAAAGAAGGCGATGGAGGACAGGGAGGAGAAGCCCAAGGTGCCGTCGACCGACCC
GGACGACAGCCTCGACGACCTCGCCGCCGGGCAGCGGCAGCCGCAGCTGCAGCGGGAGCAGCAGCACCAGGCGCCCAACA
TCTCGGAGATGAAGCCGATGACGCGGGAGGCGTACGGCGGCGGGATGTACGCGGCGGAGGAGGGCCGGAGGGAGCCCGGG
AGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGGCCGGAGCAGCCCGTGGCCAGGCCCAGGCACCCCCCGCCGCCGTC
CACCGGCGACCGCGACCTCGACATCACCGGCATGTCCTACATCCAGTAGGCGGTAGTAGCTAGCTTCTCTTCCTCCTTTT
GCGTGTCCGTGTGTTTGG--------------------------------------------------------------
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>chr5A_576
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---------------ATGTGGACGCGGTCCTCCTCCGGCCCGGAGTAGTTGCATTTCGTGGCCAAGTTCGCCAATCCAAG
CACGGCACAAGGATG--------CGCACCTATCCATATGCGCCGGCACATGCAGCTCTATCCACGAGACCTTCCCTCCCG
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--------------------------------------------------------TCCCGATCCATCATC---CGATCC
AACCC----GATCCAACGCTTACCTATAAAAGCAAGCCCGCCAGAACCATCACCCA-------------------CACTG
TTAATTTCT---------------ACTAC-AGCCAAAGCTTGTGCCAGCAGAGACCGATCGAGTCGAGCGGA-----GCG
ATGGAGAAGCTGACGCCGAGCAACGCGAAGAAGGCGATGGAGGGCAGGGAGGAGAAGCCCAAGGTGCCGTCGACCGACCC
AGACGACAGCCTCGCCGACCTCGCCGCCGGGCAGCGGCAGCCGCAGCTGCAGCGGGAGCGGGAGCACCAGGCGCCCAACA
TCTCGGAGATGAAGCCGATGACGCGCGAGGCGTACGGCGGCGGGATGTACGCGGCGGAGGAGGGCCGGAGGGAGCCCGGG
AGGCCGCGCGCCAGCGCCACGCAGAGCGCCGACGGGCCGGAGGAGCCCGTGGCCAGGCCCAGGCACCCTCCGCCGCCGTC
CACCGGCGACCGCGACCTCGACATCACCGGCATGTCCTACATCCAGTAGGC---AGTCGGTAGCTTTTCTTCCTCC---T
GCGTGTCCGTGTGTTTGG--------------------------------------------------------------
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>chr7B_2260
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-----------------------------------------------------------ATGCCCGTACGTTGCAACGGG
AGAAAAAAAATCAATTTATAGTCAAGTTTAGTTTGATTTTTATGTGCAAAAACACATTCACATGTTGATGGAAAATTTAG
TTAAAATTAAAATTGTTCAGAAGATTCAAATTTGTCCAAGCAGAAAATGCTAATCTTATAAAATATTTCTTTACCCGCCT
GAACATATAACAAAATAGAGTTAGGAACATGATAAAGTTTAGTCATTTTTCATCCGAAATTGCTAGTTGACCAGAGATAC
TGATCATAAAATTCAGAGAGATGGAGATAGCATACGCCTCATGGCAAATATTAGTGTTTCGAGCTTCTTAGTGTGGATGA
ACATTCAGGTTCAATGGAAGTGGTCTATTTGAGATTTTTCCATATGAGTATATGTATGTTACAAATACTATACCAAATGC
AATAAAATAGCATTGGGGGCTCTCGACGTTTCTTGTTAAAAACAAAGTGATCTACATGTAAGACAGGAGGAGCCCTTTCA
TTTTAGGATGGAAACTGCAATATATGTACTATTTTATATCTAGGACA--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----------------------S------------------------S--------------S-----------------
----------------------S--S----------S---SS--S---------S-SS-S----SSS-SS----------
-S--S-S--------------SS---S---------------------------------S---S--S--SSSSS-----
S-----------SSS-----------------------------------------------------------------
---------------SSSSSSSS-------------------S-------------------------------------
-------SSSS--S--------------S---S--------------S-------------S----S------SSSSSSS
SSSSSSSSSSSSSS---------S-----S---------------------------------S---------------S
-------S-S------------S-------------S-----S-------------------------------------
------------------------------------------S-----------S-SSSSS-------S----------S
-----------------------------S------SSS------------------------------S--SSSSS---
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--------S-------------------------------------------S-------S-------------------
-------------------------------S------------------------------------------------
-S------S----------------------------------------------S------------S-----------
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-----S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-S--S------------
-----S-----S--------S---SS---------S----------------------S---S--SSSSSS-S-------
-----------------S-S-----SS--------SSS--S----------------------------------S----
S---------S-----S---------------------------------SS----------------------------
-------------------------------------------------------------------------------S
-------SS---------S--------------S------S----------------S---S------SS-------S--
-----------------------SS-----S-----------------------SS--------S------S--------
-------------------------------S---------------SS
>forward_482
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--------------------------------------------------------------GGATATGCGTGTGTGCGT
TC------------------------------------------------------------------------------
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>reverse_1777
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----------------GCGCAAGTCGATTCATCCAC--------------------------------------------
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