>input_sequence_71318
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--------------------------------------------------------------------------ATGGCC
GCCTCCTTCCTCCGCCCTCTCCTCCCTCCCAAACCTTTCCTCTCCACCCCCAAACCACAAGTCCCTATCGCCCCCATCAC
CGCCGTACGCTGCACCGCGGCGCCCAAACCGACCACCTCCACCCCTAAGCCTGCCCAGCAAGAGGTAGAGGACAACC---
---AGGAGCAAGAACCCACTCCCGACGAGGCCGACGCCAACCCCCACCGCATCCCCGACGACGAGACCCCGCCGTCGGCG
ACTGCGACCACCTCCTTCTCGGTGGTCCGGCGCGTGCCGTCGGCCATCTCGACGGACGGCCGCCTCCGCCGGACGGCGCT
GACGCAGGAGGAGCCGCCCAACTACGAGATCGGGTGGAAGCGCACCAAGAATCTCCCCCTGGAGAAGCCCAAGGGGTGGG
CCATCGCCGACTTTCTGGAGAAGCTGGAGGGGCTGATGGAGCGCGGGCGGTACGGGTCGGGCGCGCTGCTGGGCACGGTG
GCGGGCGTGGTGACGGAGCGCGCCCGGGAGGAGGCGGAGATCCTGATGGCCGAGGGCGGCGTGGACGAGCGCGTGGCGAC
GGAGCTCTTCCGCGTGCTGCGGCTGGTGGAGATGGACGTGGAGATGGTCAAAGCCGCCGTCAAGGAGGAGACCGTCAAGG
AGCGCGTCGAGACGGCGCGCGCGCGGTGCCGCCAGGCCATCCTCGTCGCGCTCTCGCTGTGA------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr3D_1_TraesCS3D01G269500
TTGAACGCTAGATCGGCTCGGGCTCGCTTGATTGCTAGACCGATCTGCTCGCTCGCTCGCTTGTTGTTAGTTCAGAAAAA
ACTAGTGATGGTTTGAGGGGGAAAACAGGCTTCCCGTTGTTTACAGAC--TGAAAAACACATACTTTAAAAATGCTCATG
GATTAAT-AAAAAGGTTTGCAGATTTGGAAAAAGTTTCTGAATTCC-AAAAAAGTTCACAAATTTGAAAAAGGAAATTCG
TGGATTTGAG-AAAAAATCATGAATTTGGAAAAAATCACAAATTTGAAAAAAA----ATGAATTTGAAAAGCGTTCACAA
ATTTGGAAAATTCAAAAAC--------AAAATCATGAATTTGGAAA-TTTCACAAATTTGATTTTTTTTTGTAAATTTGA
AAAAGTTCATGAATCTGAAAAATGTTTGTGGATTTAACAAATGTTCACAAAATTTAAAAATGTTTGGGAAGTTGAAAATT
TTCAACAATTT-ATAGAAAGTTCATGAATTTGAAAAAAA--GGCAAATTTTAAAAATGTTCATGGA--------------
-----TTTGAAAAATATTCATGAATTTTAAAAAAGTTCACAATTTGGAAATAAAGGAGAAAAGAAAAAGAATCTGAAAAA
AAGAAAAAATATATGAAACC--AAGAAAAAACCTG--AAAGAGAATAAAGAGAAAGACAAAGATGAAGAAAACCAAACAA
ACGCAGGCGGAATCTTCTAGAATGTTCACAAAACCAGATTAGAGGTCTACTGTACGCTTGGCTCAGATGGGCCGGCTCAC
TGTGTCGCTGGGGCTTTGCTCTTCCT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACGAAATGCACACTATGTGGCGCAGCGTAGATTGGAAGACTTTTTCCTGATTTAATCCTGTTCC
CACAGATATCGATTCGATCCAGCTCGAGTCTGATGTCTCTTCTCTGTTCTCGCGCGGCGACAGAGCGCATTTGTAAGCTT
ATCTCCAAACCTATCTATCACGTAAAAACGGCACAGCCATTCGCTTCACCATTTCCCACCACGCCTCATCCGCCATGGCC
GCCTCCTTCCTCCGCCCTCTCCTCCCTCCCAAACCTTTCCTCTCCACCCCCAAACCACAAGTCCCTATCGCCCCCATCAC
CGCCGTACGCTGCACCGCGGCGCCCAAACCGACCACCTCCACCCCTAAGCCTGCCCAGCAAGAGGTAGAGGACAACC---
---AGGAGCAAGAACCCACTCCCGACGAGGCCGACGCCAACCCCCACCGCATCCCCGACGACGAGACCCCGCCGTCGGCG
ACTGCGACCACCTCCTTCTCGGTGGTCCGGCGCGTGCCGTCGGCCATCTCGACGGACGGCCGCCTCCGCCGGACGGCGCT
GACGCAGGAGGAGCCGCCCAACTACGAGATCGGGTGGAAGCGCACCAAGAATCTCCCCCTGGAGAAGCCCAAGGGGTGGG
CCATCGCCGACTTTCTGGAGAAGCTGGAGGGGCTGATGGAGCGCGGGCGGTACGGGTCGGGCGCGCTGCTGGGCACGGTG
GCGGGCGTGGTGACGGAGCGCGCCCGGGAGGAGGCGGAGATCCTGATGGCCGAGGGCGGCGTGGACGAGCGCGTGGCGAC
GGAGCTCTTCCGCGTGCTGCGGCTGGTGGAGATGGACGTGGAGATGGTCAAAGCCGCCGTCAAGGAGGAGACCGTCAAGG
AGCGCGTCGAGACGGCGCGCGCGCGGTGCCGCCAGGCCATCCTCGTCGCGCTCTCGCTGTGACCGTG----CACGCGCGC
TTAGGGACGGGTGTAATCACGTCTAAGTATACTGCTAGCACTTAATGCGGTGCATCCATCCAACACGTAGAAATTTTGTT
ATCAAGTGGTGCAATGAGGTCAGTCTACTCAAGCTGCAGCAAATCTGAATGTTCTGCACCGGTCAACTGTACG-CCGTTG
TGTGTCATTCTGTGAGAAGGCAGACAACACGGTCACAGACTCGAGCAGTCTATGGTAGTAGTGTCATGGCCTGATCGGGT
CCACGATCCCTCTGCAGAAGATTTGTGTTACAGATGACGAGACGTGGCAGGTGGCACCATCTTTTCTGAGG---------
-------------------CTAGCTGTACTTT------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------GCCTCGACATTCAAGCTCCTATAT
TCATGAACGACATCACA-GAGGGAAAGACTA------------------------------------------TTGCACT
TCCTCGTTTGATGCCGTCCACCACAATATTGCAATCAGAGGCCATGAGAATTCTATGAACATAAACATCCTC-GGGCTGC
GCTAGTGCTTCTCTCACTGCCATTGCCTCTAAAATTGTTGGATCCGTAATACCTCTAAATACACAACAAAGGCGCCCAAA
AAGCGCCGAGAAGGTCTCTGCACACGGCTCCCACTGCACTGAAATCATCGTTCCTTGACATGGCCGCATCAACATTGAC-
-------CTGGGTAAGATTGTCAGGAGATGCCACCCGGTACATTCGTCTGGTTCGAGCTGTCCTGATGTCCTCTCTCGCC
GGCTTGTCGAGGATCTATAGCTTAGTTAATAAGAGGAAAT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AAAGCAAGGAGTAGACAAGGGACTCTGGAAA
ATCTCCTTGTGGATTGCTTTTCGCGTAGCGATCCAAATAGCCCAAATAGTCACCACCAAACGAATGAACTACTCATGAGA
GAGTAATCTCGATCATTGAGAAAATCCAGTTCTTGATGTTAGGATCCCTTTTAGCACATATGCTCAATCAACTCCTCTTG
AGATAGCGCCCATACGGACCTGGCTATATTACATTCAATAATTAAGCGCGTGTCGCCAAG
>chr3A_1
TTGATCGCTAGATCGGCTCAGGCTTGCTTGATTGCTAGACCGATCTGCTGGCTCGCTCGCTTGTTGTTAGTTCAGAAAAA
ACCAGTGATGGTTTGAGGGGGAAAACAGGCTTCCCGTTTTTTTATAGACTTGAAAAAAACATACTTTAAAAGTGTTCATG
GATTTGAAAAAATGGTTTGCAGATTTGGAAAAAGTGTGTGAATTCCAAAAAAAGTTCACAAATTTGAAAAAGGAAATTCG
TGGATTTAAGAAAAAAATCATGAATTTGGAAAAAATTGCAAATTTGGAAAAAAAATCATGAATTTAAAAAGCGTTCACAA
ATTTTGGAAAAGTTTGTGAATTCAGAAAAAATCATGAATTTGGAAAATTTCAAAAAATTGA-TTTTTTTTGTAAATTTGA
AAAAGTTCATGAATCTGAAAAATGTTTGTGGATATAACAAATGTTTACAAAATTTGAAAACTTTTGGGAAGTTGAAAATT
TTCAACAATTTGATAGAATGTTCATGAATTTGAAAAAAGTTGGCGAATTTTAAAAATGTTCATGGATTTGGAAAAACTTC
ATGAGTTTGAAAAATATTCATGAATTTTT-AAAAGTTCAAAATTTGAAATTAAAGGAGAAAAGAAAAAGAATCTGAAAAA
AAGAAAAATAGATGAAAACCAGAAGAAAAAACCTG--AAAGAGAGTAAAGAGAAAGACAAAGATGAAGAAAACCGAACAA
AAGCAGGCGGAATCTTTTAGAATGTTCACAAAACCAGATTGAAGGCCTACTGTACGCTTGGCTAAGATGGGCCGGCTCAC
TGTGTAGCTGGGGGTTGCTCACTGTGTCTCTAGATGAGCCGGCATATCATCTAGATATTTACGAAGTCATCGTAGACGCT
TCGTCGTTGACGAGAATATTTCCTTTAACTGAATGCGCATCACGAAAAATCCTGAAATAAATCCAGGAATAAATGCGAGC
ATCAAGATTTAAACCCTGATGGGCTGGGGATCAGGAGCCCCGCTCCAGCACTGCAAGAATTTTTTTTACTACTAGTTTCA
TGGCCCAACTCAGCCACTTACAAGCCCAACCCAACCTATATTGGCATGATACAGGCTTTGAACCCACCCTTCAGTTTCTG
TCTAGATTAGCCACTACTGAGGATACCACAGTCTCTCTGACCATCCATCCAACTACATTTTCTAAAAAAAAAATCCATCC
AATTACAGATTGATTCACAAAATTCACACTACTTGAAGT---GTAGATTAGAAGCCTTTTTCCTGATTTAATCCTGTTCC
CACAAATATCGATTCGATCCAGCTCGAGTCTGATGTCTCTTCTCTGTTCTCGCGCGGCGACAGAGCGCATTTGTAAGCTT
ATCTCCAAACCTATCTATCACGTAGAAACTGCACAGCCATTCGCTTCACCATTTCCCACCACGCCTCATCCGCAATGGCC
GCCTCCTTCCTCCGCCCTCTCCTCCCTCCCAAACCTTTCCTCTCCACTCCCAAACCACAAGTCCCTATCGCCCCCATCAC
TGCCGTACGCTGCACCGCGGCGCCTAAACCGACCACCTCCACCCCAAAGCCCGCCCAGCAAGAGGG------CAACCAGG
ACGAGGAGCAAGAACCCACTCCCGACGAGGCCGACGCCAACCCCCACCGCATCCCCGACGACGAGACCCCGCCGTCGGCG
ACGGCGACCACCTCCTTCTCGGTGGTCCGGCGCGTGCCGTCGGCCATCTCGACGGACGGACGCCTCCGCCGGACGGCGCT
GACGCAGGAGGAGCCGCCCAACTACGAGATCGGGTGGAAGCGCACCAAGAATCTCCCCCTGGAGAAGCCCAAGGGGTGGG
CCATCGCCGATTTTCTGGAGAAGCTGGAGGGGCTGATGGAGCGCGGGCGGTACGGGTCGGGCGCGCTGCTGGGCACGGTG
GCGGGCGTGGTGACGGAGCGCGCCCGGGAGGAGGCGGAGATCCTGATGGCCGAGGGCGGCGTGGACGAGCGCGTGGCGAC
GGAGCTCTTCCGCGTGCTGCGGCTGGTGGAGATGGACGTCGAGATGGTCAAAGCCGCCGTCAAGGAGGAGACCGTCAAGG
AGCGCGTCGAGACGGCGCGCGCGCGGTGCCGCCAGGCCATCCTCGTCGCGCTCTCGCTGTGACCGTG----CACGCACGC
TTAGGGACGGGTGTAATCACGTCTAAGTATACTACGACCAGCAATTAATCTGTGCATG-CCAACACGTAGAATTTTTGTT
ATCAAATGGTGCAATGAGGTCAGTCTACTCAAGCTGCAGCAAATCTGAATGTTCTGCACCGGTCAACTGTACG-CCGTTG
TGTCTCATTCTGTGAGAA---------CACGGTCACAGATTCGAGCAGTATGTGGTAA---TGTCATGGCCTGATCGGGT
CCACGATCCCTCCGCATAAGATTTGTGTTACAGATGACGAGACGTGGCA-------CCATCTTTTCTGAGGGTTGTAAAC
GAATCAAGTACAGTTCAGGCTAGCTGTACTTTGCATTTGATGCTAAATAAAACAAGTATTGCTAGGA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAAAAACGTCGGCTGCTTCT
AAGAGCATGGTTAATAATATAGCCAACAATCGATTACAAAGAGTTGCCATGTCATCTAGAGCCAATTTAATAGCCGACAT
GTACAATAGTAAATTTTTAATGTGTCATATTTTATTAATAGTTGGCCCATCTTGCAATTTCATAAAGTTTATTAGGGCTC
GTGTTGCAACCGGCTACTAACGAAGAGCTCACTTTTCTCCTCTCTCCTCTTCTCTTTTCTCCAACAAAGCAAAAATATAA
TATTTTAGTCCTCTAGCCTACTTATGTCACCCTATTGTACTTGCTCTAAACATTTCTTAAC-TTTTTCTTAAACAAACCC
ACGAAACTTCATTAAATCATCATACTGTTTAATACTTTTTACAGGAATGAAAAGAAGACCACCCACTGTCCTAAACCAAG
CATTATGGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------CAGCCCTAAAATTAAAGCCTGCTTTGCAATGTTGTTAGCCTCGACATTCAAGCTCGTATAT
TCATGAATGATGTTACATGAGGGAAAGAGAGTTGATCCATCAACAATTTATCTGATAATCACCCTATT---TGTTGCACT
TCCTTGTTTGATGCCGTCCACCACAATATTGCAATCGGAGGCCACGAGAATTCTATGAACATAAATATTCTCGGGGCTGC
GCTAGTGCTTCTCTCACTGTCATT--------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr3B_613
--------------------------------------------------------------------------------
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-----------ATGAAAACCAGAAGAAAAAACCATATAAAGAGAATAAAGAGAAAGACGAAGATGAAGAAAACCAAACAA
ACGCAGGCGGAATCTTCTAGAATGTTCACAGAACCAGATCCGAGTTCTACTGTACGCTTGGCTCAGATGGGCCGGCTCAC
TGTGTCGCTGGGGC-TTGCTCTTCCT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACGAAATGCACACTATGTGGCGC---GTAGACTAGAAGCCTTTTTCCTGATTTAATCCCGCTCC
CACAAATATCGATTCGATCCAGCTCGAGTCTGATGTCTCTTCTCTGTTCTCGCGCGGCGACAGAGCGCATCTGTAAGCTT
ATCTCCAAACCTATCTATCACGTAAAAACTGCACAGCCATTCGCTTCACCATTTCCCACCACGCCTCATCCGCCATGGCC
GCCTCCTTCCTCCGCCCTCTCCTCCCTCCCAAACCTTTCCTCTCCACTCCCAAACCACAAGTCCCTATCGCCCCCATCAC
CGCCGTACGCTGCACCGCGGCGCCCAAACCGACCACCTCCACCCCCAAGCCTGCCCAGCAAGAAGG------CAACC---
---AGGAGCAAGAACCCACTCCCGACGAGGCCGACGCCAACCCCCACCGCATCCCCGACGACGAGACCCCGCCGTCGGCG
ACTGCGACCACCTCCTTCTCGGTGGTCCGGCGCGTGCCGTCGGCCATCTCGACGGACGGCCGCCTCCGTCGGACGGCGCT
GACGCAGGAGGAGCCGCCCAACTACGAGATCGGGTGGAAGCGCACCAAGAATCTCCCCCTGGAGAAGCCCAAGGGGTGGG
CCATCGCCGACTTTCTGGAGAAGCTGGAGGGGCTGATGGAGCGCGGGCGGTACGGGTCGGGCGCGCTGCTGGGCACGGTG
GCGGGCGTGGTGACGGAGCGCGCCCGGGAGGAGGCGGAGATCCTGATGGCCGAGGGCGGCGTGGACGAGCGCGTGGCGAC
GGAGCTCTTCCGCGTGCTGCGGCTGGTGGAGATGGACGTGGAGATGGTCAAAGCCGCCGTCAAGGAGGAGACCGTCAAGG
AGCGCGTCGAGACGGCGCGCGCGCGGTGCCGCCAGGCCATCCTCGTCGCGCTCTCGCTGTGACCGTGGCTGCACGCACGC
TTAGGGACGGGTGTAATCACGTCTAAGTATACTGCTAGCACTTAATGCTGTGCAT-------------AGAAATTTTGTT
ATCGAGTGGTGCAATGAGGTCAGTCTACTCAAGCTGCAGCAAATCTGAATGTTCTGCACCGGTCAACTGTACGCCGGTTG
TGTGTCATTCTGCAAGAAGGCAGACAACATGGCCGCAGACTCGAGCAGTCTATG---GTAGTGTCATGGCCTGGTCGGGT
CCACGATCCCTCTGC----------------AGATGACGAGACGTGGCAGGTGGCACCATCTTTTCTGAGGGTTGTAAAC
GAATCAGGTACAATTCAGGCTAACTGTACTTTGCATTTGATGCTAAATAAACTAGCTCTGTTTTATTGCTACTCCCTCTA
GGTGCACCATGAACAAGGTGGAGGAAAAAAAGATAACTTAGGGCCTGCTTGGATCCAAGGGACTATTTTTAGTCTGACTA
AAAATAGTCTTTTTTAGAGGCTAAAGTTCCAAGCACCCCTGACTAAAGAGAGGCTAGAACTAGTCTTGAGGCTAAAACTT
TTTAGTCACATGAAACCTACTAAAATATGTATTAGCCCTCTCTTTCCTCATTTAATTCCTCTCCTTTAGCACATGCGAGT
TCTGGATTGGATGATTTGGAGGATAATAAATGCTCAATAACTTCATTTTAGTCTCTTTAGTATTTGGATCCAAGCATGGG
TGAGGCTAGCAAGTTTTAGTCCCACTACTTTTAGTCATGGGACTAAAACGTATTCAAGCACCCTCTTAATGTTCATTTGC
TAATTAATGATATTGCATGCAATAAATTGACAATTACATGTTGTGTTTGATAGTCTCAAGTCATTGAAAGCATACATGCC
CCATATCTCTTATTGGTTGGCTCCTTTATTTATGTCAAGAAATAAGAAACGAGATAAGAGTTAATGCACCGCGCCTAAGT
GTTTTAGGAATTATTTAGCTTTCGTACGATGACTTATATACCTAGACGGAGGGGAGTAGGAAAAAGCGTCGGCTGCTTCT
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ACATTTCTTAACCTTTTTCTTAGACAAACTC
GCAAAACTTCATTAAATCATCAC----------ACTGTTTACAGGAATGAAAAGAAGATCACCCAACTCTCCAAACCATC
TACAGTACGCGGATGACACCCTTATTTTCATTAAAAACTTCGGACGTGAGATTCTGAATCTCAAGTTCCTCTTAATGTGC
TTTGAGGAGATGTCAGACCTAAAGATTAACTTCGAAAGAGCGAGGCCATCGTCACATGAGGGGATCTTGAATCGCAACTT
AGGGCGGCTCATATAATGAATTGTGAGCTCGGGTCTATACCAATAAAATATTTAGGTATGCCCATCTCTGCGAGGGCTAT
ATATATGGAGAAGTTCCAGCCAATGGTCGATAAAATGGCCGCGCGTGTGGAGCCTTGGCAGGGCAAGCTCTTGGCGTCGG
GAGGCCGGCTTGTCCTTATCAACGGTTGCCTTACGAACATCCCTATGTTCGTCATGGGGTTTTATCTCCTTCGGGATGGA
TACATGATAAACTGAATAAAGTTTGCTCCCGGTTCTTTTGCGCTAAAGAAAACGGGAGGCAAAAATACCACATGGTGAGT
TGGGACAACATTTGTCAGCCAAAGGAGGTTGCGGGCTTGGGTGTTATTAACACCAAAGTAATGAATTGGTGCCTCATGAC
GAAGTGGGCGTGGAAAGTCCTAACGGGACAAGGAGGCATATGGTTGGATATCTTTACCCGGAAATACGTAGTCCAGGACA
GGGTGGATTTTAGGAGAAGCGCAAAACTCTCTCAGTTTGCGAGGGATGTAAGGAAGGTACAACCACTTCTCCGCCTAAGA
ACCCAATTCGTGGTTCATAACGGTCGTGCAACATGTTTTTGGCTGGATAAGTGGTGTAATAATGATCGATTCTGCGATAT
GTTCCCGACCTTGTTTGCCATCGCGATGAACCGGGAGGCGAAAGTGGCGGAAATATGGCAACATGGTCAATGGGTGCCCC
AATTCCGTCGATCCTTGGGGGCCGCTGAAATTAACGAGCGGGAACAATTGAGAAAGAAATTAAGAGGGCAGCAAATTACT
CTTGGTCGCGACGAAGTTATATGGCGTCTTGAACCTTTGTGGTGCTTCTCGACTGGACCTTTATATAGAGAAATTTTCAA
ATCCACAACCCCTTGTGACCTATCAGGAATATGGAAGGCAAGACTCCCAGCCAAAATCAAAATTTTCTTGTGGCAAGTGG
CGCGAGATATAAAGAAGGGGCCCGGGCGATGGCAAATGTATATGCTGCGGTGAACCCGAAGACCATGACCATATCCTTTT
TAGATGTATATAATGGCTCGATTCGTGTGGAGTGGGGTGAGGTCGGTGACAAGGTCCTCGTGGAATCCGAGCGGGTTCTC
AGAATTCTATCGGTTAGCGGCCACATCTGGGGGAGATAGACAGATGACATGGCTAGGCTTCAGGGCCATTGCTTGGGCTC
TCTAGACCACAAGAAGTAAAGCTCTAATAGAGGGACAATTCATCAAGCATCCAGCTGATCTTTTGTACAAAATTATGTCT
TTTATGCAGCTCTGGAAGCTACTGGCAAAAACAAAGGACATAGGGCGCGTTTAGGAGCTCGTAGCAAAGGTACGGGCAAG
GTGCACTGAGCTGCGCCGAACATCATGAGAGACATCTCCGGCTGATCTTCGCCGCCGCTTGCTACCTCGACAGCCCATGA
TCTTCATGTAGTTAGATCGCCAGCGCTGCGCCGTTGTGTCCCAGCCTACGGGCTTGTATCTCTCCTTTATTTGCTTTCTT
CGCCCCTTGGATGGTTAGACTTATGGATTTGTAAGGGCCTCAGTTTAAGGCCGGACAAGCGCCTCTTTTCTAAAAACTCT
CCAAAGCAAGCATAACTATCAGCCCCTAAATTAAAGCATGATTCGTAATGTTGTCAGCCTCGACATTCAAGCTCATATAT
TCATAAATGATATTACA-GAGGGAAAGAGAGTTGATCCATCAACAATTTCTCTGATAATCGCCCCATAGTCTGTTGCACT
TCCTCGTTTGATGCCGTCCAGCACAATATTGCAATCGGAGGCCACAAGAATTCTATGAACATAAAGATCCTC-GGCCTGC
GCTAGTGCTTCTCTCACTATCATTGCCTCTAAAATTGTTGGATCTGTAATACCTCTAAATACACAGCAAAGGCGCCCGAA
AAGCGCCGAAAAGGTCTCTGCACACGGCTCCCACTGCACAGAAACCATCGTTCCTTGACATGACCGCATCAACATTGACG
GATTGACCTCGGTAAGATTGTTAGGAGATGCCACCCGGTGCATTCGTCTGATTCGAGCTGTCCTTGTGTCCTCTCTCGCT
GGTTTGTCGAGGATCTGTAGCTTAGTTAATAAGAGGAAAT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------AAAGCAAAGAGTAGACAAGGGACTCTGGAA-
-TCTCCTTGTGGATTGCTTTTCGTCTAGCGATCGAAATAGGCCATATAGTCACCACCAAACGAATGAACTACTCATGAGA
CAGTGA-CGCGATCATTGAGAAAATCCAGTTCTTGGTGTTAGGATCCCTTTTAGCACATATGCTCGACCAACTCCTCTTG
AGATGGCGCCCAGACAGACCTGGCCATATTACATTCAATAATTACGCGTGTGTCGCCAAG
>chr3A_2286
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--------------------------GCTCCCACTGCACCAAAACCATCGTTCCTTGACATGGCCGCATCAACATTGAC-
-------CTGGGTAAGATTGTCAAGAGATACCACCCGGTGCGTTGGTTTGATTCGAGCTGTCGTGGTGTCCTCTCTCGCC
GGCTTGTCAAG----TATAGCTTGGTTAATAAGAGGAAACTATCCAACACCTACTGGTGGGTTGTGTCTTTGCTAAACAT
GTCTGGCATTGGATGGGGAGCATCACGGGCATGCCAGATTTCGAGCCCCAAGATAGAGAGGGCCTCGGCGAATGGTGCCT
TCGACATGATCGTTGCTCAGCTCATCGCAAGTCCACTCGCGCTAAATGCCTGCATGGGATGTGGTTTCTTTGGAAGCACC
GGAACGACACCGTGTTCAATGGTGTTGCCCCGTCTCTTCCCGTGACATTACTTAGGATTAGGGAGGAGGGTGTTCTTTGG
GTGAGGGTTGATCTCATGAAAGGAAACACAGTAGGGTTTGAGGTAGAGGATGGTGGCCCGGATCGCGAGTAGTAATAACT
AGGTCTTCCGGTGCTGCCGGAGAATCCTGACATGTAATTATGTGAAGTAAGCGTGGACTTGGGTGTCTTCCCTTTTCTTC
TTTAATGAATGATACGCACACGCATGTGTATTCGAGAAAAAAAAAGAAAAAAGCAAGGTGTAGACAAGGGACTCTGGAAA
ATCTCCTTGTGGATTGCTGTTCGCCCAGCGCTCCAAATAGCCCATATAGTCACCACCAAATGAATGAACTACTCATGAGA
CAGTGA-CTCGATCATTGAGAAAATCTAGTTCTTGGTGTTAGGACCCCTCTTAGCACAGATGCTCAACCAACTCCTCTTG
AGATAGCACCCAGATGGACCTGGCCATATTACATTCAATAATTAAGCGTGTGTCGCCAAG
>SNPs
----S--------------S----S------------------------S------------------------------
--S-----------------------------------S---SSSSSS---------S-------------S--S-----
----SSS-----S----------------------S-S------------------------------------------
-------S----------------------------SS--------S------------------S--------------
----S-S---SSSSSSSSS---------------------------------S---S----S------------------
---------------------------------S-----------S---------S----SS------------------
------------------S-------------------S-----S-----------------------------------
----------------------------SS---------S------S--S------------------------------
--------SSSSSSS-----------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------SSS-------S----S-------------------------
----S---------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------------------------------S--------------------------------
---------------------------------------------S-------------------SSSSSSS--------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------S---
------------------------------------------------S------SSSS---------------------
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----------------S---------------------------------------------------------------
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--------------------------------------------------------------------------S-----
-------S--S--S--------------SSS-------------------------------------------------
------------------------------------S-------S--------------------S--------------
-------------------S------------------------S--------------------S-----------S--
---------S-----------------------------S----S-----------------------------------
---------------------------------------S----------S--------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------S-----------------------------------
S---S-S----------------------------S-------------------------------S------------
------------S-----------S-----------------------S-----------
>forward_20
TTGAACGCTAGATCGGCTCG------------------------------------------------------------
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>reverse_1592
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-----------------------------------------------------------------------ACAACCAGG
AGCAAGAACCC---------------------------------------------------------------------
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>forward_1590
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--------------------------------------------------CTGCCCAGCAAGAGGTAGAG----------
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>reverse_5678
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-----------------------------------------------------------------------------AAA
AAGCGCCGAGAAGGTCT---------------------------------------------------------------
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------------------------------------------------------------
