>input_sequence_71313
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-----------------------------------------------------------------ATGTCTGCAAGCTGC
TGGTTCTTCCGGGCCCTGTGGCTACCACTCATGCTCGCCGCCGCAGCGACCGAGGACCAAGGGGGAGACT------GCTC
GGCCAAGAGGTGCAGCAACCTCACCATTTCCGACCCTTTCTGGCTCTCTGACAAGGAGGCGCCAAGATCGTGTGGTTCCC
AAGACTTCGAGGTCGCTTGCCATGATAACAGATTTCCAGGTCTACGGAGCTCCATACTTGGGA------GCTTCGGCTTT
GCAATCATCGATATCACTTACAAGGAAAACAGTTTGCACGTCGTTGATCGAGGCAATCTGGAATTACTGC---AAGCCTC
CAACAGCTGCCAAGGGATGATATTAAACATCTCCGTCAAATTGGCCCAACCGTTTAAGATCGACCCCGCCGGCCTGAACC
TCATCTTGTACAACTGCACGGAGGAGGCCGCGGC------GGCGGCTGTGGCACGCCGGGACAGAGAGCTGGTGCAGATG
AGCCTGAGGTGTGGGAACAAGAGCAAGATGTTTGTCCGCACAGGAGTGCGTTACGAC---GTGACCGGGAACTACGGCCG
CTACGCTTTGGAGGGCTGCGACGCTGTGGTCACGCCGATGTTGGGCT---CGTTGTCGGGTGAGACGAACGCGAGCGACT
ATGAGCAGTTCATTAACGATGGCTTCCTCTTGACATGGGATCTA------GGTAAGTTCACCCGCCAAATCATCTTTTAA
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>chr3B_1_TraesCS3B01G053700
CCCGTGCCGTTCTCTTTGACGGGCACCTTCTTGGTCATAGGATTCGTCCATATATATCTTTGTTCAGCCACCATATCTTG
TTGTACATCTTCCCACCACCCCACTGCCAAATCTGCTACTCTAATGGCTATTAGTAACGGCTGGTTCTTGGTGTTTGTCT
GGGTATGGTCGCTGCTACTGCACTCGCCGGAGCTGAGGATCTCACCATCTCCCACCCATTCTGGCTCCCTGAACTGGAGA
CGGAAAGATCGTGTGGTCAATTGGATTTTGAGGTCACTTGCTTCAACGACACTCCAGTTCTCCGCAGCTCTGGATTCAGG
G-CTTTGCGATCATGGACATCTCCTACGAATTTCTTGTACTAATTTCT-ATCAGGTGGCTGTCACTAATTTCCTGCCTCT
TGCTTTCCCAAGATGTGGGTAGGCGTACTTCACCCTAGCCTATATATACTAGTCAAATTGACACGTGCTGCCGGACGTGC
TTGTTTGAGTTGGATTTTCTCCGGATATCTTTGCGGCACGATGGTGGCATATTAGCCTTGCTCTAGTTACAGCAGTCTCA
TTTCTCCCTTCCAAGGCAGAGTACTCTTGCTGGGAAACTATTGCGCATTGCTAGAAGTTTGTTTAACAAGTTGAACTGGT
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----TTGTACAAAGATCAGAATCTACTCCTTATTATAGTTAGCAAACAAGAGTACAAAGTGACAAGGCTAAGCATCCTGC
CTCCTGTCACATCACGGGCTCATGGAGGTCATGGTCATGGGTTAGTTCGTCAAAGGGGTATTAGTCTAAAATTTTACTAG
TCATTGCTTACTAGTC-----CGTGGAGGATGATCTCTTGGCCCAAATTTCCAGTCAAATATTCCG--------------
GCTCGCTTGCCGTCGTCCCCATATATGGTTCGAGCTTCGACCACTCTATTCTCTCTTACGTGTAGCCTATCTCCCATAGC
TCAGGACAACCGATCCAGTCACCCCATTTGTTGTCCACTGCAATCTTTCCAAGTCTGCTGATCCGATGTCTGCAAGCTGC
TGGTTCTTCCGGGCCCTGTGGCTACCACTCATGCTCGCCGCCGCAGCGACCGAGGACCAAGGGGGAGACT------GCTC
GGCCAAGAGGTGCAGCAACCTCACCATTTCCGACCCTTTCTGGCTCTCTGACAAGGAGGCGCCAAGATCGTGTGGTTCCC
AAGACTTCGAGGTCGCTTGCCATGATAACAGATTTCCAGGTCTACGGAGCTCCATACTTGGGA------GCTTCGGCTTT
GCAATCATCGATATCACTTACAAGGAAAACAGTTTGCACGTCGTTGATCGAGGCAATCTGGAATTACTGC---AAGCCTC
CAACAGCTGCCAAGGGATGATATTAAACATCTCCGTCAAATTGGCCCAACCGTTTAAGATCGACCCCGCCGGCCTGAACC
TCATCTTGTACAACTGCACGGAGGAGGCCGCGGC------GGCGGCTGTGGCACGCCGGGACAGAGAGCTGGTGCAGATG
AGCCTGAGGTGTGGGAACAAGAGCAAGATGTTTGTCCGCACAGGAGTGCGTTACGAC---GTGACCGGGAACTACGGCCG
CTACGCTTTGGAGGGCTGCGACGCTGTGGTCACGCCGATGTTGGGCT---CGTTGTCGGGTGAGACGAACGCGAGCGACT
ATGAGCAGTTCATTAACGATGGCTTCCTCTTGACATGGGATCTA------GGTAAGTTCACCCGCCAAATCATCTTTTAA
TCAAGTTTCTAGCTAGTGCGGTGCCAAATTTTCTAGGATTTGTCTATCGAACTAAGCAACTAAGCATGCCACTCACTAAC
TCAGGATAAATCTAAGGTTTATTATGCATAATCGTGCGGACGTTCATCGTATAGTCGGGGAGTGCCTAAGAGCATCTCTA
CCCGATCCCTTATAATTTAACTCATTATATGCTTTATCAAACTTGACTCCTTAAGATGTGAGAAGTTAAATTATGGTCGG
ACCCCGAGCCCTCAACTTTAACTTGTCAAATGAATTGATCCCGTATGAAAGTCTCTCTCTCTCTCTCTCCATCTTCCTTC
CGACGACTAGCCTGGGCGGGGACAATGGTGGCTCTCTCCCGAGGCTTGGGAAAGCGAGGGAAGGCTAGACGCACACATGC
AAAAGCAGCACAAATGCGCGTGTGCGCGGGCACATACGCAGCGATGGAGGCAGAGTACTATGTGGCCCATGGCGTGGAGG
GCTAGTCGACGCAGGTGTGCGCCCCTGCGCCGCCTCTTCACGCTTTCGTGGCGCCTGGAGGGTGGGAGTGTCCGCGTGTG
GTAGGACGCTCATGTTTAGGATTGACGGCTATGACAACGACATCTGCTTGACGTTCTAGTCCACTGCCATGAGCACCAGC
ACAAGTAGTGTGCCATCGAGGCGGCCCGACTTGTGAATCGCCCAAGTTCGTCCAAATAGCCCATGACCAAGGCTTGTGAT
TCTGCCAAGCCCTTTCTATTTTTGGAATCTTGAAACGTATGCACATAGATAATGAATATCAAGGCATATTGTTTACTACA
GTGAAAACACATGGAGAAGTGCTAGAATTTTTTTTAGTTACACCACGTGGACGTATAATTTTCTTTCAATCAAATTTTTT
AGCAGATGGTTGCATGGATCAATTGATGCAAAGTTCTATGGGATGGTTTAACCTCCTTTTCGATGAAAACCATTAAATTT
TAACAAGACAACTCAACAGAAGTTTGCTTTGGAATTGGGC
>chr3D_247
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------GATCGTGTGGTCCCTAGGATTTTGAGGTCACCTGCTTCAACGACACTCCAGTTCTCCGCAGGTCTGGATTCAGG
GGCTTTGCGATCATGGACATCTCCTATGAATTTCTTATACTAATTTCTAATCAGGTGGATGTCACTAATTTCCTACCTCT
TGCTTTCCCAAGATGTGGGTCGACGTACTTCACCATAGCCTATATATACTGGTCAAATTGACACGTGCTGCCGGACGTGC
TTGTTTGAGTTAGATTTTCTCTGGATATCTTTGCGGCACGATGGCGGCATATTAGCCTTGCGCTAGTTACAGCAGTCTCC
TTTCTCCCTTCCAAGGCAGAGTACTGTCGCTGGGAAACTATTGCGCATTGCTAGAAGTTTGTTTAACAAGTTGAACTGGT
TGTACAGAACGTGTTGTATAGAAAGAATTCTGAAGACTAGAATCCTGCCTCTCTTGTAATTCATTTGAATCTACGGATTT
GCTATTACAAAGTTGGGTGTGAAATTGCTTTTCTGACGCTGGCCAAGTCACACATCATAAATGCAAGGTTGAAAAAGGAA
ATGTGATGCCTAGATGTAGAAACGTGAAACAGAAGGTTAGACGGCTTTTTTGAATTGGATACTGTTACCTGCCAAGTGGG
AAGGTTGTACAAAGATCAGAATCTACTCCTTAT---AGTTAGCAAACAAGAGTAC-------CAAGGCTAAGCATCCTGG
CTCCTGTCACATCACGGGCTCATGGAGGTCATGGTCATGGCTTACTGCGTCAAAGGGGTATTAGTCTAAAATTTTACTAG
TCATTGCTTACTACTAGTATACGTGGAGGATGATCTCTTGGCCCAAATTTCCAGTCAAATATTCCGGCCAATAGAACTCC
GCTCGCTTGCCGTCGTCCCCATATATGGTTCCAGCTTGGACCACTCTATTCTCTATTACTTGTAGCCTATCTCCCATTGC
CCAGGACAACCGATCCATTCACCCCCTTTGTTGTTCATTGCAATCTTTCCAAATCTGCTGCTCCGATGTCTGCAAGCTGC
TGGTTCTTCCGGGCCCTGTGGCTACCACTGATGCTCGCCGCCGCGGCGACCGAGGACCAAGGGGGAGACT------GCTC
GGCCAAGAGGTGCAGCAACATCACCATTTCCGACCCTTTCTGGCTCTCTGACGAGGAGGCGCCAAGATCGTGTGGTTCCC
AAGACTTCGAGGTCGCTTGCCATGACAACAGATTTCCAGGTCTACGGAGCTCTATACCCGGGA------GCTCTGGCTTT
GCAATCATCGATATCTCTTATGAGGAAAACAGTCTGCGCGTCGTTGATCGAGGCCATCTGGAATTACTGC---AAGCCTC
CAACAGCTGCCAAGTAACGATATTAAACGCCTCCATCAAACTGGCCCGACCGTTTATGATCGACCCTGTTGGCCTGAACC
TCATCTTGTACAACTGCACGGAGGAGGCCGCAGC------GGCGGCTGTGGCACGCCGGGACAGAGAGCTGGTGCAGATG
AGCCTGAGGTGTGGGAACAAGAGCAAGATGTTTGTCCGCACGGGAGTGCGTTACGAC---GTGACCGGGAACTACGGCCG
CTACGCTTTGGAGGGCTGCGACGCTGTGGTCACGCCGATGCTGGGCT---CGTCGTCGGGTGGGACGAACGCGAGCGACT
ACGAGCAGCTCATTGACGATGGCTTTCTCTTGACATGGGATCCCACTCCGGGTAAGTTCACCCGCCAAATCATCTTTTAA
TCAAGTTCCTAGCTAGTGCGGTGCATAATTTTCTAGGCTTTCTGTATCGAACTAAGCAATCAGGCATGTCACTCACTAAC
CGAGCATAAAGCTGAGGTTCATCGTGCATAATCGCGCGGATGTTCACCGTA-----------------------------
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>chr3A_957
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---------------------CCCCCTTTTCTGTTCACTACAATCTTTTCAAATCTTCTGTTCCCATGGTACCGAGTTGC
TGGTTCTTCCGGGCCCTGTGGCTACCACTGGTGCTCGCGGTGGCTGCGGCCGAGGAACAAGGGGAAGCCTGCTCGGGCTC
GGCCAAGATGTGCGGCAACCTCACCATCTCCCGCCCGTTCTGGCTCACGGACTGGGAAAAGGGAAGACCATGTGGTCACC
CAGACTTTGAGGTCTCTTGCGTTAACGGCAGTT---CATTTCTAAGGAGCTCATGCCCTTT-A------GCGGTGGCTTT
GCAGTCGTCAACATCTCTTACCAGGAGGAAAGCTTGCACGTGGTTGATAGTGGCAAGCTGTACTTGTTGCTGGACGCCTC
CAACAGCTGCCGAGTACCGATCTGGAACACCTCTGCCAAGCTCGGCGTCTCGTTCAGCGTCAATCCCGGCAATCTGAGCC
TCATCGTGTACAATTGCACGGAGGAGGGCGCGGC------GGCAGCCGTGGCTCGTCGGGATAGAGAGCTGGTGCAGACG
GGACTGAGGTGCGGGAACGAGAGCGAGGTGCTTGCCCGCGCGGGAGTGCGTTACGAC---GCCACCGGAAACTACTCTGG
CTACGCTTTGGAGGGCTGCGACGCTAGCATCGTGCCGGTGCTGGGCT---CGTCGTCGGGCAGGACGAACGCGAGCGACT
ACATGCAGCTCATCAAGGATGGCTTTCTCCTCACATGGG-----------------------------------------
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>chr3B_1033
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-----------------GTGGCTGCCACTGATGCTCGCCGGGGGCGAG---GAGCAGCAAGGGGAAGGCT------GCTT
GCCCAAGATGTGCGGCAACCTCACCATCTCCAACCCATTCTGGCTCCCTGACAAGGGGGCGGGAAGATCTTGTGGTTCCA
TGGATTTTGAGGTCGCTTGCCATAACAACAGTTTTCCAGGTCTACGGAGCTCTATACCCTTGGCCTCGGGCCTTGGCTTT
GCAATCATCGACATCTCTTACAAGGAAAACAGTTTGCGCGTCGTTGATCAAGGCAATCTGGAACTACTGC---AAGCCTC
CAACAGCTGCCTTGGAATGATATTGAACACATCCGTCAAACTTGGCGAACCGTTTAGGATCAATCCCGTCGGCCTGAACC
TCATCTTGTACAACTGCACGGAGGAGGGCGCAGC------GGCGACTGCAGCACATCGGGACAGGGACCTGGTAAAGACC
GGAGTGAGATGCCGGAACGAGAGCAAGGTGCTTGTCCGCACGGGAGTACCTTACGAC---GCGACCGGGAACTATGGCGG
CTACGCTTTGAAGGGCTGCGAAGCTGTCGTCGTGCCGGTGATGGGCT---CGTCC---GGTGAGGCGAACGTGAGCAACT
ACGAGCAACTCATCAGCAATGGCTTCCTCTTGACATGGGATCT-------------------------------------
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>chr3A_1035
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-------------------GGCTGCCACCGATGCTGGCCGGAGCTGAG---GAGCAGCAAGGCGAAGGCT------GCTC
AGCCAAGAGGTGCGGCAACCTCACCATCTCTGACCCATTCTGGCTCTCTGACCAGGAGGCGGGAAGATCGTGTGGTTCCC
AGGACTACGAGGTCGCTTGCCAAAACAATGGTTTTCCAGGTCTACGGAGCTCTGTACCTTCGA------GCTCCGGCTTT
GGAATCATCGATATCTCTTATGAGGAAAACAGTTTGCGCGTGGTTGATCGAGGCCATCTGGAATTACTGC---AAGCCTC
CAACAGCTGCCAAGTAATGATATTTAACACCTCCGTCAAACTGGCCGAACCTTTTAGGATCGACCCTGGCAACCTGAACC
TCATCTTGTACAACTGCACGGAGGAGGCAGCGGT------TGCGGCTGCGGCACGCCGGGACAGAGACCTGATGCAGACG
AGCCTGAGATGTGGGAACGAGAGCAAGATGTTTGTTCGCACGGGAGTGCGTTACGAC---GCGACCGGGAACTATGGCGG
CTACGCTTTGGAGGGCTGCAACGCTGTGGTCACTCCGGTGCTTGGCT---CATCGTCGGGCCAGACGAACGCGTCCGACT
ACATGCAGCTCATCAACGATGGCTTTCTCTTGACATGGGATC--------------------------------------
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>chr3D_1086
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----------------------------------------------------------------------------GCTC
GGCCAGGAGGTGCGGCAGCTTCACCATCTCCCACCCATTCTGGCTCTCTAACAGTGAGGCGCAAAGATCGTATGGCCCCC
AGGACTTCGAGGTCGCTTGCCATAACAAGAATTTTCCAGGTCTACGGAGCTCTATACCCTCGGCCTCGAACCTCGGCTTT
GCAATCATCGACATCTCTTACAAGGAAAACAGTTTGCGCGTCGTCGATCAAGGCAATCTGGAAATACTGC---AAGCCTC
CAACAGCTGCCATGGAACGATATTGAACACCTCCGTCAAGCTGGCCCAACCGTTTAGGATCAACCCCGTCGGCCTGAGCC
TCATCTTGTACAACTGCACGGAGGAGAGCGCAGCCGCCGCGGCGACTGTGGCACGTCGGGACAGAGACTTGGTAAAGACC
GGAGTCAGATGCCGGAACGAGAGCAACGTGCTTGTCCACACGGGAGTACCTT---AC---ACGACCGGGAACTACGGCGG
CTACGCTTTGAAGGGCTGTGAAGCTGTCGTCGTGCCGGTGATGGGCT---CGTCG---GGCGAGGCCAACATGAGCAACT
ACGAGCAGCTCATCAGCGATGGCTTCCTCTTGACATGGGATC--------------------------------------
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>chr3A_1086
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----------------------------------------------------------------------------GCTC
GACCAAGAGGTGCGGCAACTTCAACATCTCCGAACCATTCTGGCTCTCTAACAGTGAGGCGCAAAGATCATGTGGCCCCC
AGGACTTCGAGGTCGCCTGCCATAACAAGAGTTTTCCAGGTCTACGGAGCTCTATACCCTCGGCCTCGGGCCTCGGCTTT
GCAATCATCAACATCTCTTACAAGGAAAACAGTTTGCGCGTCGTTGATCAAGGCAATCTGGAAGTACTGC---AAGCCTC
CAACAGCTGCCATGGAACGATATTGAACACCTCCGTCAAGCTGGCCCAACCGTTTAGGATCAATCCCGTCGGCCTGAGCC
TCATCTTGTACAACTGCTCGGAGGAGGGCGCAGCCGCAGCGGCGACTGTGGCACGTCGGGATAGAGACCTGGTAAAGACC
GGAGTGAGATGCCGGAACGAGAGCAAGGTGCTTGTCCGCACGGGAGTACCTT---ACGACGCGACCGGGGACTACGGCGG
GTACGCTTTGAAGGCCTGTGAAGCTGTCGTCGTGCCGGTGATGGGCT---TGTCG---GGCGAGGCGAACATGAGCAACT
ACAAGCAGCTCATTAACGATGGCTTCCTCTTGACATGGGAT---------------------------------------
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>chr3A_1139
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-------------------------------------------------GACGAGGAGGTGGGAAGATCTTGTGGTTCCA
TGGATATTGAGGTCGCTTGCCATAACAATAGTTTTCCAGGTCTACGGAGCTCTATACTCGGAA------GCTTCGGCTTT
GCAATCATCGATATCTCTTATGAGGAAAACAGTTTGCGCGTGGTTGATCGAGGCCTTCTGGAATTACTGC---AAGCTTC
CAACAGTTGCCAAGTAACGATATTGAACACCTCCGTCAAAGTGGCCCAACCGTTAAGCATCGACCATGTCGGCCTGAACC
TCATCTTGTACAACTGCATGG------------C------GGTTGCGGCGGCGCACCGGGACAGATACCTGGTGCAGACG
AGCCTGAGATGTGGGAACGAGAGCAAGATGTTTGTTCGCACGGGAGTGCGTT---ACGACGCGACCGGGAACTATGGCGG
CTACGCTTTGGAGGGCTGCAACGCTGTGGTCACGCCGGTGCTTGGCTAATCGTCG---GGCCAGACAAACGCGTCCGACT
ACAGGCAGCTCATCAACGATGGCTTTCTCTTGACATGGGATC--------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------------SS-S---------------S-----------------------------S------------
--------------------------S---------S---------------------S---------------S-----
--------------------S-S-----------S---------------S-----------------------------
-----------S---------S----------------------S----------------S-----------------S
-------------------------S-S----------------------------------------------------
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---------------------------------SSS-------------------SSSSSSS-----------------S
----------------------------------------S---S-S---------------------------------
-------------S-S----------------------------------------------------------------
-------------------------------S-----S----------------S----S-----------------S--
S----------------S-------S--------S-----------------S-------S-------------------
-----------------------------S--------------S-----------------------------------
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-------------------------S--------------------------S---------------------------
---------------S----------------------------------------------------------------
---------------S-------------S----------S---------------S-----------S-----------
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-----------------------------------------S--------------------------------------
----------------------------------------S------------S--------------------------
-S------S----------------------------------S------------------------------------
-------S----------------SS-----------S---S-S---------------SS-S-----S-----------
SS--S-----S--S-----S--SS----------S-----S-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_157
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---------------------------------------------------------CGGCTGGTTCTTGGTGTTTG---
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>reverse_2313
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------------------------------------------------------------------------CTTCCTTC
CGACGACTAGCC--------------------------------------------------------------------
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