>input_sequence_71288
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--------------------------------------------------ATGGCCGGCGA---AGATCTGCAGCTACTG
GGCGGGTTGGTGAGTCCATTCACACTCCGGGTACGCATGGCGCTGCACGTTAAGGGTGTGAGCTACGAGTACCTCGAGCA
GGACCTATGGGACAAGAGCGAGCTCCTCCTCGCGTCTAACCCGGTGCACAAAAAGGTCCCGGTGGCCGGTGCTCATCCAC
GCCGGTAAGCCCATCTGCGAGTCGGTCGCCATCATGCAGTACGTCGAAGAGGTCTGGGCGAGCG------CCCCCTCGCT
CCTCCCCGCCGACCCCTACGACCGTGCCGTCACTCGCTTCTGGGCCGCCTATGTCGATGACAAGCTGTTCCCTGCCTGGC
TAGCCATCCTGTGCGCCGCGACAGAGGAGGAGAGAGCGCAAAAGCTCGCCGCCATGCTCGCGGTGCTTGCGCCCATGGAG
GAGGCCTTCTCTGCCTGCTCGGCCTTCTCA---TCCGGTGGCGACTCCATCGGGTACTTCGACCTCGCGCTCGGATGCCA
GCTCTTCTGGCTCGACGCGCTGAGGGAGATGTTCGACGTGATGGTCATCGACGAGGGCAGGACCCCGCGCTTAGCCGCGT
GGACCAAGAGGTTCCTGGAGACGGAGGCGGCCAAGATGGTGAAGCCGCCCATGAGCAGCATGCTGGAGTACGCCGGGCAG
CTGCG---------------------------------------------------------------------------
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-----------------------------------------------------------------GGCTCGCTGGGCTGC
TGATGATACCGCGGCCGCCAAGTAG-------------------------------------------------------
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------------------------------------------------------------------
>chr7B_1_TraesCS7B01G058000
ACCTGGACATAGTGGAGATGGGCGCTCGAGCTGGAGGCAGCAGAGTTGTACACGGCTGTGTTGGCCATCAGATGCGTCGC
ACACGCAGGCTCGATGGGGAGCAGCGGCCCAAGCGCTTCTCAGGCCGATGGCGACGAACTGGATCTCGGCCGTCGCGGGA
CGGGGAGGGCGGGCGCCCACTCGGCGTCGCGCAGCACGGCGGCGTGGTCGGAGGAGAGGTGACCGTGGTGGGTGGGTGAG
GAGCGGCTCGAGGGAGGGGCGGAGGAGGGAAGCGGCGTGTGAGAACCGGCGGCGAGCCGTGCTCCTCCTGCTGAGCAGCG
AGAGGACGAGGAGGAGGGGAAGGCGCGACGGCGAGAGGGGGTGGGAGGACCTCGACGACGGTAGTGGCTCAGGTCAACGA
CGCCGCGTCGATCCCGCCGTGGATCTGGGCGCTGCATCGTGCGGCGGCGGCCGGCTGGGCGAGAAGACGACGGCGGCGGG
GCTGGGAGGCGCGGGAGAGAGAGAGGCGAGGCGGGGGAGG----------------------------------------
---------------------------------------------CGCGAGTGCGGGAGGAGCGACGGCTAGGTCACACC
CATGTCGCTACTGGGTATTTTTCCAGCCATGCGAAAAGACGGAAATACCCTGGTGGGGGTAAGGTATTTACAGTCCGATG
CAATTGAAATTTTATCCAAAGGTTGAGAACGATCGGCCCAAGATCGCACGGCTCACACGAAATCAACCCGAGATCCGACG
GCCTGTATCGCGAGAAGATTTCGATCCGACGGCCGAGAAGCTCAAATCGCTGAGGAGCCTCCTGCATCCACTCCTCTTTT
ATTTCTGGATTCCTATTTCCATTGCTCTAGCAGCCATGCATAGCTT-----ATACTTCTCCTCTTTCAACAACTGCTCAG
CTCAATTTGTGCTATATAAACAACAAGATGGAGGCTACGCTTTCAGATTGAATTAGGAAGAAAACATACACAAGACAGTA
GTCTACCAGCGCCAAACTGCAGCAAGCGATTGAAGAGGAGGAAGAAAACGATGGCCGGCGA---AGATCTGCAGCTACTG
GGCGGGTTGGTGAGTCCATTCACACTCCGGGTACGCATGGCGCTGCACGTTAAGGGTGTGAGCTACGAGTACCTCGAGCA
GGACCTATGGGACAAGAGCGAGCTCCTCCTCGCGTCTAACCCGGTGCACAAAAAGGTCCCGGTGGCCGGTGCTCATCCAC
GCCGGTAAGCCCATCTGCGAGTCGGTCGCCATCATGCAGTACGTCGAAGAGGTCTGGGCGAGCG------CCCCCTCGCT
CCTCCCCGCCGACCCCTACGACCGTGCCGTCACTCGCTTCTGGGCCGCCTATGTCGATGACAAGCTGTTCCCTGCCTGGC
TAGCCATCCTGTGCGCCGCGACAGAGGAGGAGAGAGCGCAAAAGCTCGCCGCCATGCTCGCGGTGCTTGCGCCCATGGAG
GAGGCCTTCTCTGCCTGCTCGGCCTTCTCA---TCCGGTGGCGACTCCATCGGGTACTTCGACCTCGCGCTCGGATGCCA
GCTCTTCTGGCTCGACGCGCTGAGGGAGATGTTCGACGTGATGGTCATCGACGAGGGCAGGACCCCGCGCTTAGCCGCGT
GGACCAAGAGGTTCCTGGAGACGGAGGCGGCCAAGATGGTGAAGCCGCCCATGAGCAGCATGCTGGAGTACGCCGGGCAG
CTGCG---------------------------------------------------------------------------
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-----------------------------------------------------------------GGCTCGCTGGGCTGC
TGATGATACCGCGGCCGCCAAGTAGGTGGCTCGGTGGAGCTTCTTGAGATCGACCGACATGTG-AAGTAATGGCTAATG-
GTTTTTGTTTAAGGTTGCAATCGCGTGTCGTCACTTTGTTT-ATTTGTTTTCCAACATCATCGTCTTTCGTCAGTCTTCT
TTGTTGTGT--------GA-CCATTTCATCACGCCTGTCCAGTATTATGCAATAAATGGCCATTTGTTTTGGTAAAGCTG
GAGTGAAAAAAACCATATACCGACAGTCGGTAGATGCGGTGGGCCAAGCGACTATTCCAACCAAAATATGTTTTTTCTTA
TGGAAAAGTTTACGATCGACACGCCGGCCGAATGTTCAGCCGGACGCGCGCTACGCCTAGGATCCATATGGATCGAACGC
ATCATATGACCCACACATCTTCT----------------CTCCATTCATTTTCTTTCCTTTCTCTCCTTAGTTCTCC---
-----TCCAATCGATCCCCCATTTCTCTTCCCTCGCCATGAACGCCATACCACCATGGATGCGGCCTTCAAGCACCCC--
-CCCCTTCCTCCCCACTCTACCTCCCTGCTGATGCGTGCCCTTGTCAC-------CTCCCGCA--AAAGCCTGCGTTCAG
GCGACGACGAGCTACTCTGCG----CCCTCCCTC---CCCTGTGAGCTTGAGGTGACGACGCTCGCGTACCATGCGGATG
TGACACCA-TTCTTTTTGCAAGACGTCGTGCTTCCTGCTATGGCTTTG--TTTTTCATTTTTAGGTGGTTGCGGCGTTTT
GATTTATCAGTTCCAGCTTTTTATTTCACCAGTTGTAG-CAATTTCATCCACGAGCACCAA-TCTTTGATTCGTTGGTT-
--------------GCCGGTAGTAGCTTTTCACGTCGTTGGTTCCAACTTTTCATTTCGTCGGTCACAACAATCCCCCTT
TTT--GACAGTAGCATCTTTTTGATTCACAGGTTGTAGCATTTTATTTTGTCGGCGGTAGCTTTTTGCTGGAGGAAGGGG
ATCGATGAAG--ATTTTT-TTTGCTACAACCACCTACCACAG-AAGCCTCAACCATGTGTGCCAGA
>chr4B_1
ACCTGGACATAGTGGAGATGGGCGCTCGAGCTGGAGGCAGCAGAGTTGTACACGGCTGTGTTGGCCATCAGATGCGTCGC
ACACGCAGGCTCGATGGGGAGCAGCGGCCCAAGCGCTTCTCAGGCCGATGGCGACGAACTGGATCTCGGCCGTCGCGGGA
CGGGGAGGGCGGGCGCCCACTCGGCGTCGCGCAGCACGGCGGCGTGGTCGGAGGAGAGGTGACCGTGGTGGGTGGGTGAG
GAGCGGCTCGAGGGAGGGGCGGAGGAGGGAAGCGGCGTGTGAGAACCGGCGGCGAGCCGTGCTCCTCCTGCTGAGCAGCG
AGAGGACGAGGAGGAGGGGAAGGCGCGACGGCGAGAGGGGGTGGGAGGACCTCGACGACGGTAGTGGCTCAGGTCAACGA
CGCCGCGTCGATCCCGCCGTGGATCTGGGCGCTGCATCGTGCGGCGGCGGCCGGCTGGGCGAGAAGACGACGGCGGCGGG
GCTGGGAGGCGCGGGAGAGAGAGAGGCGAGGCGGGGGAGGCGCGAGTGCGGGAGGGAGGCGGCGGCTAGGGTTCTAGCAC
GGGAGGGAGAGGTCGGGGAGAGGGTTGGGCGAGCGGAGGCGGCTGCGCGAGTGCGGGAGGAGCGACGGCTAGGTCACACC
CATGTCGCTACTGGGTATTTTTCCAGCCATGCGAAAAGACGGAAATACCCTGGTGGGGGTAAGGTATTTACAGTCCGATG
CAATTGAATTTTTATCCAGAGGCTGAGAACGATCGGCCCAAGATCGCACGGCTCACACGAAATCAACCCGAGATCCGACG
GCCTGTATCGCGAGAAGATTTCGATCCGACGGCCGAGAAGCTCTAATCGCTGAGAGAGCTCTAGCATCCACTCCTCTCTT
ATTTCTGGAT----------------------------------------------------------------------
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------------------------------------------------------------------
>chrUn_1
ACCTGGACATAGTGGAGATGGGCGCTCGAGCTGGAGGCAGCAGAGTTGTACACGGCTGTGTTGGCCATCAGATGCGTCGC
ACACGCAGGCTCGATGGGGAGCAGCGGCCCAAGCGCTTCTCAGGCCGATGGCGACGAACTGGATCTCGGCCGTCGCGGGA
CGGGGAGGGCGGGCGCCCACTCGGCGTCGCGCAGCACGGCGGCGTGGTCGGAGGAGAGGTGACCGTGGTGGGTGGGTGAG
GAGCGGCTCGAGGGAGGGGCGGAGGAGGGAAGCGGCGTGTGAGAACCGGCGGCGAGCCGTGCTCCTCCTGCTGAGCAGCG
AGAGGACGAGGAGGAGGGGAAGGCGCGACGGCGAGAGGGGGTGGGAGGACCTCGACGACGGTAGTGGCTCAGGTCAACGA
CGCCGCGTCGATCCCGCCGTGGATCTGGGCGCTGCATCGTGCGGCGGCGGCCGGCTGGGCGAGAAGACGACGGCGGCGGG
GCTGGGAGGCGCGGGAGAGAGAGAGGCGAGGCGGGGGAGGCGCGAGTGCGGGAGG-------------------------
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>chr7B_804
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--------ATTCCTATTTCCATTGCTCTATCAGCCGTGCGTAGCTTCTATTAA-----TCCTCTTTCAACAACTGCTCAG
CTCAATTTGTGCTATATAAACAACAAGATGGAGGCTACACTTTCAGATTGAACTAGGAAGAACACATACACAAGACAGTA
GTATACCAGCGCCAAACTGCAGCAAGCGATCGAAGAGGAAGAA---AACGATGGCTGGTGAAGGAGATCTGCAGCTACTG
GGCGGGTTGGTGAGTCCATTCACACTCCGGGTACGCATGGCGCTGCACGTCAAGGGTGTGAGCTACGAGTACCTCGAGCA
GGACCTATGGGACAAGAGCGAGCTCCTCCTCGCGTCTAACCCGGTGCACAAAAAGGTCCCGGTG-------CTCATCCAC
GCCGGTAAGCCCATCTGCGAGTCGGTCGCCATCGTGCAGTACGTCGACGAGGTCTGGGCGAGCG------CCCCCTCGCT
CCTCCCCGCCGACCCCTACGACCGTGCCGTCACTCGCTTCTGCGCCGCCTATGTCGACGACGAGCTGTTCCCTGCCTGGC
TAGCCATCCTGCGCGCCGCGACAGAGGAGGAGAGAGCGCAAAAGCTCGCCGCCACGCTCGCGGTGCTTGCGCCCATGGAG
GAGGCCTTCTCCGCCTGCTCGGCCTTCTCA---TCCGGTGGCGACTCCATCGGGTACTTCGACCTCGCGCTCGGGTGCCA
GCTCTTCTGGCTCGACGCGCTGAGGGAGATGTTCGACGTGATGGTCATCGACGATGGCAGGACCCCGCCCTTAGCCGCGT
GGACCGAGAGGTTCCTGGAGACGGAGGCGGCCAAGATGGTGAAGCCGCCCATGAGCAGCATGCTGGAGTACGCCGGGCAG
CTGCGAGAAAATCGGATATTTGCCACTTTGAATACGTGGCTTCTCCAAATTGCCACTCCCAAGATTGTCTTCACAGAATT
GCCATCCAGCTCATCGGCTCCTTGATTACCATGCCATTTCTCTCCTTTCATCGATTTCTTTGTCTGTTTTACATTTATAA
ACATCGGAAAGTACCAGACTACCCCTGAGACAAAGGTACGTAACTGGGCATCCAATCGGCACTCAGTTTTTCTAGAACTC
ATCTAAATGAGATATAATTTGGTCTCATTCACCTTTTATAGCCATTGGATGTGATGTTATAAGATGCGTGTGTGCTGACG
TGGGTTGTATCTGTTTTTATTTTCAAGGTGAATAAGACCAAATTATATCTCATCTAAATGAGTTCTAGGCACTCCCATCG
GCACTTGAAGCGGGATGAGAGGGCGCTGCCAGCCATGGATATCGTGCGTGCCGCATCGCCAATTCCCTGGACGCCGCGTG
CCCACGATTTCCTGGACACCGGAAAGCAGCGAGCCGCCGATCTCCTCGATGACACGTGCTGCGGATAGGATGAACTCGCC
ATGTGCCGCCGATCGCCTCAACGCGGCGTGCCGCTGATCGCATGAACACCGTGTGCCGCCGATCACCTAGACGCTGTGTG
CTATGTATGCCTGGGCATGTGGCCGAATCTTTCTGGGCGGTATTATGCCTTTCGCTTGCTTTGTGTGCAAAAATCTATGG
CGACCGATCTCTCTTTGCCAGCTCGTCAACAACGCTCTGCGTGCTCTGGACTGTGGTTCACCGTTCACGACGTATCAGCG
GAGAAGATGTCGTCGGCCGGTAGTAGTTCACTACTTGCATGAATCTAACAAAACACAGTAACTCTGTTTCTCTACTGAAC
CTTGGATAAATTTCTCTTCCAGAAGACCACAGTGTCCGTGCACCGGCCAGTCTTCCAGACAAAATCTTATCGGCCGATGG
CAGCTCCTCGGTGGCGACATGCCCATCTCCCTCCGCCTCCTCCCGTCCTCACGAGACGCGCCATCCCTCGTCATCCCAGT
TGAGCGGCCCGGCAACCCGGACGGGTGGCGCAAGCGGCGAGCAGGGGACGGGCTGAGCGGCTATGGCACGCGGGAGGCAG
GGCGAGCGGCGACGGCGGCCGGGGAAAGTGAGCAGCCAGCGGTCTAGTGGCGCGAGCTGCAACGGCGACCGGACGGGCGA
CGCTAGCAAGCGCTCTTACAGACAACGAGTAATTTTGCGGCTCAGTCGTTTCTTCTCGGTCGAGAACCAGATGCATAATC
AGATGGAATACCCATGTTTGTGTACTTAGCCTTAGGGGTGGTTTGGTATTTTCTGTTGCCTATAAATGGAAAATTAAAAA
GAAATCCAGTTAAAGGAGAGAAATGGCATGGTAATCAAGGCGTCAACAGGCTGAATGGCAATTTTGCAAAGCCAATCTTG
AAAGTGGCAATTTTGAAAAGCCCTACATTCGAAGTGGCAAATATCTAATTTTCTCGGCAGCTGCGGGCTCGCTGGGCTGC
TGATGATACCGCGGCCGCCAAGTAGGTGGGTCGGTGGAGCTTCTTGTGGTCGACCCACGTGTG-AGATATGGCCAATGGT
GTTGTTTTTTAAGGTTGCAATCGCGTGTCGTCAGTTTATTTTGTTTGCTTTCTAACATCATCGTCTTTCGTCAGTCTTCT
TAGTTGTGTGTGTGAGAGACCCATTTTATCACGCCTGTCCGGTAT---GCAATAAATGGTCATTTGTATTGGTAGAGCTG
TACA-AATACAACCATACACTGGCAGAA-------GCGGTGGGCCAAGCGACTATTCCAACCAAAACATGTTT-------
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>chr7A_809
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-------------TATTTCCATTGCTGTAGCAGCCGGGCGTAGCTT-----AA-----TGCTCCTTCAAAAACTGCCCAG
CTCAATTTGTGCTATATAAACAACAAGATCATGGCAACACTCTCAGATCGAGTTAGGAAGAACACATACACAGGACAGTA
GTCTACCATTGGCAAA---CAGCAAGTGGTCGAAGAGGAGGAAGAAAACAATGGCTGGCCAAGGAGATCTGCAGCTACTG
GGCGGGTCGGTGAGCCCGTTCACGCTCCGCGTACGCATGGCGCTGCACGTCAAGGGCGTGAGCTACGAGTACCTGGAGCA
GGACCTGGTCAACAAGAGCGACCTCCTCCTCGCGTCCAACCCGGTGCACAAGAAGGTCCCGGTG-------CTCATCCAC
CGCGGCAAGCCCATCTGCGAGTCGGTCGCCATCGTGCAATACGTCGACGAGGTCTGGGCGGGGGCGGGCACCCCCTCGCT
CCTCCCCGCCGACCCCTACGACCGTGCCGTCGCTCGCTTCTGGGCCGCCTACGTCGACGACAAGCTGTTCCCTGCGTGGC
TAGCCATCCTGCGCGCGGCCACGGAGGAGGAGAGAGCGCAAAAGCTCGCCGCCACGCTCGCGGTGCTCGCGCCCATGGAG
GAGGCCTTCTCCTCCTGCTCGGCCTTCTCCTCCTCCGGTGGCGACTCCATCGAGTACTTCGACCTCGCGCTCGGGTGCCA
GCTCTTCTGGTTGGACGCGCTGAGGGAGATGTTCGGCGTGAGGGTCATCGACGAGGGCAGGACCCCGCGCTTCGCCGCGT
GGGCCGAGAGGTTCCTGGAGACGGAGGCGGCCAAGACGGTGAAGCCGCCGATGAGCAGCATGCTGGAGTTCGCCGGGCT-
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-----------------------------------------------------------GCTGCGGGCTCGCTGGGCTGC
TGCTGATGCCGCGGCCGCCAAGTAGGTGGCTCGGTGGAGCTCCTTGAGGTCGACCGACGTGTGAAGATGTGGCCAATGGT
TTTGTTTC--AAGGTTGCAATCGCGTGCCGTCACTTT-----GTTTGTTTTCCAACATCATCGTCTTTCGTCAGTCTTCT
TACTAGTTCTGTGACCTG---CATTTCATCACGCCTGTCCAGTAT---GCAATAAAGGGTCATCTGTTTTGGTAGAGCTG
TACA-AATACAACCATACACCGGCAGAA-------GC-GTGGGCCAGCCGACTATTCCAACCAAAATATGTTT-------
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>chr7A_1294
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--------------------------------CTCGCTTCTGGGCCGCCTACGTCGACGACAAGCTGTTCCCGGCGTGGC
TAGCCATCCTGCGCGCGGCCACGGAGGAGGAGAGAGCGCAAAAGCTCGCCGCTACGCTCCCGGTGCTCGCGCCCATGGAG
GAGGCCTTCTCCGCCTGCTCGGCCTTCTCCTCCGGCA---GCGACTCCATCGGGTACTTCGACCTCGCGCTCGGGTGCCA
GCTCTTCTGGCTCGACGCGCTGAGGGAGATGTTCGGCGTGATGGTCATCGACGAGGGCAGGACCCCGCGCTTCGCCGCGT
GGACCGAGAGGTTCCTGGAGACGGAGGCGGCCAAGATGGTGAAGCCGCCCATGAGCAGTATGCTGGAGTACGCCGGGCA-
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-----------------------------------------------------------GCTGCGGGCTCGCTGGGCTGC
TGATGATACCGCGGCCGCCAAGTAGGTGGCTCGGTGGAGCTTCTTGAGGTCGACCCACGAGTGAAGATATGGCCAATGGT
GTTGTTTTTTAAGGTTGCAATCGTGTGTCGTCACTTT-----ATTTGTTTTCCAACA----------TCATCATTCCTCT
TAGTTGTGT--------GACCCATTTCATCACGCCTGTCCAGTAT-----------------------------------
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>chr5D_1990
AAACGTTTCCAATTGG----------------------------------------------------------------
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-------------------CACGCCGGCCGAATGTTCGGCCGGACGCGCGCTACGCGTAGATCCTACGGAACGAGAGGGC
CCATGCACCGCTTTTTTCACCTGACCTTATCCTCTCCTCCTCCACTCGTTTTCTTTCCTATCTCTTCTTCGTTCTCC---
-----TCCGGTCGGTCTT-CTTTCCTCTCCCCTCGCCATGAACGCCACACCACCATGGATTTGGCCTTCAAGCACCTCCG
TCCCCTCCGTCCCCTCTCTACCTCCCTGCCGACATGCGTCCTCACCAC-------CACCTCCCGCAAAGCACGCGTTGAG
GCGACGACGAGCTGCTCTGCGCTCCCCCCCCCTC---CCCTTTGATCTTGAGGCGACGACGCTCGCACACCG-------G
TGGCACCA-TT-TTTTTGCAAGACGTCGTGCG----GCTATGGCTTTG--TTTTTTATTTTTAGCCAGTTGCAACTTTTT
GATTTATCGGTTCCAGCTCTTTATTTCGCCGGTTGTAGCAATTTTCATCCACGAGCACCAA-TCTTTGATTCGTTGGTTC
CAACATTTTTTCCCGTCGGTAGTAGCTTTTCGCATCGCTGGTTCCAACTTTTGATTTCGC-GGTCGCAACAATCCCACTT
T-C--GACAGTAGCAACTTTTTGATTCATAGGTTGTAGCATTTTTTCGTG-CGGTAGTAGCTTTTTGCTGGAGGAAGGGG
ATCGATGAAG--TTTTTT-TT-GCTACAACCATGTAGCACAG-AAGCTTCAACCATGCGTGCCAGA
>chr3D_2081
ACA-----------------------------------------------------------------------------
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----------------------------------TCCTCCTCCACTCGTTTTATTTCCTCTCTCTCCTTTGTTCTCC---
-----TCCAATCGATCCCCCTTTTCTCTCCCCTTGCCAAGAACGCCACACCGCCATGGATGCGGCCTTCAAGCACCCC--
-ATG-TCCATCCCCTCTCTACCTCCCCACTGACACGCGTCCTCACCAC-------CGCCTCCCGCAAAGCCCGCGTTGAG
GCGACAACGAGCTGCTCTGTG----CCCTCCCTC---CTTTGTGAGCTTGAGGTGATGGCGCTCGATCACCATGCGGATG
CGACATCA-TT-TTTTTGCAAGACGCTGTGCTTCCTATTATGGCTTTATCTTTTTTATTTTTAGCCGGTTGCAGCTTTTT
GATTTCTCGGTTCTAGCTTTTTATTTCGCCGGTTGTAGCAATTT-CATTTACGAGCACCAA-TCTTTGATTAGTTGGTTC
CAACATGTTTTCCCGCCGGTTGTAGCTTTTCACGTCGCTGGTTTCAACTTTTGATTTCGCCAGTCACAACAATCCCCCTT
TTC--GTCAGTAGGAACTTTTTGATTCACACGTTGTAGCATTTTATTTTGTGGGTAGTAGCTGTTTGCTGGAGGAAGGGG
ATCGATGAAG--ATTTTT-TTTGCTACAACCATGTACCACAG-AAGCTTCAACCATGTGTGCCAGA
>chr2B_2081
ACA-----------------------------------------------------------------------------
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----------------------------------TCCTCCTTCACTCGTTTTCTTTCCCCTCTCTCTCCATCATTTGCCT
CCAATTCCAATCGATCCCATTTTTCTCTTCCCTCGCCATGAACGCCGCACCGCCATGGATACGGCCTTCAGGCAACCC--
-CTG-TCCATCCCCTCTCTTCCTCCCTGCTGACGGGTGTCCTCACAAGTCACCCACGCCTCCCGCAAAACCCACGTTAAG
GCGACGGCGAGCTGCTCTGCG----CCCTCCCTC---CCCAGTGAGCTTGAGGCGACGGCGCTCGCGCACCATGCGGATG
CGACATCA-TT-TTTTTGCAAGACGCCGTCCTTCCCGCTATGGCTTTG--TTAT---TTTTTAGCCGGTTGCATCTTTTT
GATTTGTCGGTTCCAGCTTTTTATTTAGCCAGTTGTAGCAATTT-CATTCACGAGCACCAATTCTTTGATTCGTTGGTTC
CAACATTTTTTCTAGCCGGTAGTAGCTTTTCACATCGCGGGTTCCAACTTTTTATTTTGCCGGTCCCAACAAACCCCCTT
TTT--GCCAGTAACAAC----TGATTCACAGGTTGTAGCATTTTATTTTCGGCAATTGCT-TTTTCCTTGGAGGAAGGGG
ATCGATGAAG--ATTTTT-TT-GTTACAACCACATACCACAGAAACCTTCAACCGTGTGTGCCA--
>chr2B_2081
ACA-----------------------------------------------------------------------------
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----------------------------------TCCTCCTTCACTCGTTTTCTTTCCCCTCTCTCTCCGTCGTTTGCCT
CCAATTCCAGTCGATCCCATTTTTCTCTTCCCTCGCCATGAACGCCGCACCGCCATGGATACGGCCTTCAGGCAACCC--
-CTG-TCCATCCCCTCTCTTCCTCCCTGCTGACGGGTGTCCTCACAAGTCACCCACGCCTCCCGCAAAGCCCACGTTATG
GTGACGGCGAGCTGCTCTGCG----CCCTCCCTC---CCCAGTGAGCTTGAGGCGACGGCGCTCGCGGACCATGCGGATG
CGACATCA-TT-TTTTTGCAAGACGCCGTTCTTCCCGCTATGGCTTTG--TTTTT----TTTAGCCGGTTGCATCTTTTT
TATTTGTCGGTTCCAGCTTTTTATTTAGCCAGTTATAGCAATTT-CATTCACGAGCACCAATTCTTTGATTCGTTGGTTC
CAACATTTTTTCTAGCCGGTAGTAGCTTTTCACGTGGCGGGTTCCAACTTTTTATTTTGCCGGTCCCAACAAACCCCCTT
TTT--GCCAGTAACAAC----TGATTCACAGGTTGTAGCATTTTATTTTCGGCAATTTCT-TTTTCGTTGGAGGAAGGGG
ATCGATGAAG--ATTTTT-TT-GTTACAACCACATACCACAGAAACCTTCAACCGTGTGTGCCA--
>chr3B_2083
--A-----------------------------------------------------------------------------
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----------------------------------TCCTCCTCCACTCGTTTTATTTCCTCTCTCTCCTTCGTTCTCC---
-----TCCAATTGATCCCCTTTTTCTCACCCCTTGCCATGAACGCCACACCGCCATGGATGCGGCCTTCAAGCTACCC--
-ATG-TCCATCCCCTCTCTACCTCCCTGCTGACACGCGTCCTCACCAC-------CGCCTCCCGCAAAGCCTGCATTGAG
GCGATGACGAGCTGCTCTGT-----CCCTCCCTC---CCCTGTGAGCTTGAGGCGATGGCGCTCTCTCACCGTGCGGCTG
TGACACTATTT-GTTTTGCAAGACACCGTGCTTCCTGTTATGGCTTTG--TTTTTTATTTTTAGCCGGTTGCAGCTTTTT
GATTTGTCGATTCCAGCTTTTTATTTCGCTGGTTGTAG-AAATTTCATTCACGAGCACCAA-ACTTTGATTAGTTGGTTC
CAACATTTTTTCCAGCTGGTAGTAGCTTTTCACGTCGCTGGTTTCAATTTTTGATTTCGCCGGTCGCAACATCCCCCTTT
T-T--GTTAGTAGCAACTTTTTGATTCACACGTTGTAGCATTTTATTTCGTCAGTAGTAGCTGTTTGCTGGAGGAAGGGG
ATCGATGAAG--ATTTTTATTTGCTACAACCTTGTACCACAG-AAGCTTCAACCATGTGTGCCAGA
>chr1B_2083
--A-----------------------------------------------------------------------------
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----------------------------------TCCTCCTCCACTCGTTTTCTTTCCTGTCTCTTCTTCGTTCTCC---
-----TCCTGTTGGTCTT-CTTTCCTCTCCTCTCGCCATGAACGCCACACCGCCATGGATGTGGCCTTCAAGCACCCATT
CCCCCTCCGTCCCCTCTCTACCTCCATGTCGCCGTGCGTCCTCACCAC-------CACCTCCCGCAAAGCCCGTGTTGAG
GCGACGACGAGCTACTCTGCG----CCC-CCCTC---CCCTGTGAGCTTGAGGCGACGGCGCTCACACACCG-------G
CGACACCA-TT-TTTTTGCAAGACGCCATGCG----GCTATGGCTTTG--TTTTTTATATTTAGCCAGTTGCAACTTTTT
GATTTGTCGGTTCCAGCTTTTTATTTCGCCGGTTGTAGCAATTTTCATCCACGAGCACCAA-TCTTTGATTCATTGGTTC
CAACATTTTTTCCCGTCGGTAGTAGCTTTTCACGTCGCTGGTTCCAACTTTTGATTTCGCCGGTCGCAACAATCCCACTT
T-C--GACAGTAGCAACTTTTTGAGTCATAGGTTGTAGCACTTTATTTCGTCTGTAGTACCTTTTTGCTGGAGGAAGGGG
ATCGATGAAG--TTTTTT-TT-GCTACAACCATGTAGCACAG-AAGCTTCAACCATGCGTGCCAGA
>chr6D_2084
TCTCCT--------------------------------------------------------------------------
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--------------------------------------CCTCCACTCGTTTTCTTTCCTATCTCTTCTTCGTTCTCC---
-----TCCGGTCGGTCTT-CTTTCCTCTCCCCTCGCTATGAACTCCACACCGCCATGGATTTGGCCTTCAAGCACCTTCG
TCCCCTCCGTCCCCTCTGTACCTCCCTGCCGACATGCGTCCTCACCAC-------CACCCCCCGCAAAGCACGCATTGAG
GCGACGACGAGCTGCTCTGCG----------CTC---CCCTGTGAGCTTGAGGCGACGGCGCTCGCACACCG-------G
CGGCACCA-TT-TTTTCGCAAGACGCCGTGCG----GCTATGGCTTTG--TATTTTATTTTTAGCCAGTTGCAACTTTTT
GATTTATCGGTTCCAGCTTTTTATTTTGCCGGTTGTAGCAATTTTCATCAACGAGCACCAA-TCTTTGATTCGTTGGTTC
CAACTTTTTTCCC-GTCGGTAGTAGCTTTTCATGTCGCTGGTTCCAACTTTTGATTTCGCCGGTCGCAACAATCCCACTT
T-C--GACAGTAGCAACTTTTTGATTCATAGGTTGTAGCAATTTTTTTCGTCGGTAGTAGCTTTTTGCTGGAGGAAGGGG
ATTGATGAAG--TTTTTT-T--GCTACAACCATGTAGCACAG-AAGCTTCAACCATGCGTGCCAGA
>chr3B_2090
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---------------------------------------CTCCACTCGTTTTCTTTCCTGTCTCTCCTTCGTTCTTC---
------CCAAATCGATCCCTTTTTAGCTCCCCTCGCCATGAACTCCACACCACCATGGATGCAGCCTTCAAGCACC----
CCCCCTCCCTCCCCTCTCTACCTCCCTACTGAAGCGCGTCCTCACCAC-------CT---------------------AG
GTGGCGACGAGCTGCTCTGTG----CCC-TCCCCCGTCCCTGTGAGCTTGAGGCGACGGCGCTCGCACACCATGCGGACG
TGACACCA-TT-TTTTTGCAAGACGCCATACTTCTTGCTATGACTTTG--TTTTTTATTTTTAGCTGGTTGCAACTTTTT
GATTTGTCGGTTCCAGCTTTTTATTTTGCCGGTTGTAGCAATTT-CATCCATGAGCATCAA-TCTTTGATTCGTTGGTTC
CAACATTTTTTCCCATCGGCAGTAGCTTTTCACTTTGCTGGTTCCAACTTTTGATTTCGCCGGTCACAACAACCCCCCTT
T-TTCGAGAGTAGCAAATCTTTGATTCATAGGTTGTAGCATTTTATTTCGTCAATAGTAGCTTTTTGCTGGAGGAAGGGG
ATCGATGAAGAATTTTTT-G--GCTACAACCATGTACCACAG-AAGCTTCAACCATGTGTGC----
>chr1A_2092
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-----------------------------------------CCATTCGTTTTCTTTCCTATCTCTTCTTCGTTCTCC---
-----TCCGGTCGGTCTT-CTTTCCTCTTCCCTCGCCATGAACGCCACACCGCCATGGATTTGGCCTTCAAGCACACC--
CCCCCTCCGTCCCCTCTCTACCTCCCTGCCGACGTGCGTCCTCACCAC-------CACCTCCCACAAAGCCCGCGTTGAG
GCGACGACGAGCTGCTCTGCG----CCC-CCCTC---CCCTGTGAGCTTGATGCGACGACGCTCGCACACCG-------G
CGACACCATTT-TTTTCGCAAGACGCCGTGCG----GATATGGCTTTG--TTTTTTATTTTTAACCAGTTGCAACTTTTT
GATCTGTCGGTTCCAGCTTTTTATTTTGCCGGTTGTAGCAATTTTCATCCACGAGCACCAA-TCTTTGATTCGTTGGTAC
CAACATTTTTCCC-GTCAGTAGTAGTTTTTCACGTCGCTGGTTCCAACTTTTGATTTCGCCGGTCGCAACAATCCCACTT
T-T--GATAGTAGCAAC-TTTTGAGTCATAGGTTGTAGCATTTTATTTCATCAGTAGTAGCTTTTTGCTGAAGGAAGGGG
ATTAATGAAGTTTTTTTT----GCTACAACCATGTAGCACAG-AAGCTTCAACCATGCGTGCCAGA
>SNPs
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--------S---------S---S---------------------------------------------------------
-------------------------------------------S----------SSSS---SS--------------S--
-----------------------------------S---S------------SSSSSS----------------------
--------------------------------------S-----------------------S-----------------
------------------------------S------------------------S------------------------
--------------------------------------------------S-----------------------------
----------------------------------------------------------------SSSSSSS---------
---------------------------------S-------------S--------------------------------
---------------------------------------------------------S----------------------
-----------S------------------------------------------S-------------------------
-----------S--------------------------------------------------------------S-----
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-----S--------------------------------------------------------------------------
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------------------------------------------------S---------S------SS--SS-S-S-SS--
---S--S------------------------------S------------------------------------------
-S-------------------------------------------SSS-----------S--------------S-----
S-SSS--S-S-------S----S---SSSSSSSSS--------------------------------------SSSSSSS
SSSSSSSSSSSSSSSSSSS------------------S------------------S---SSS-S-SSSSSSSS--SS--
SSSSSSSSSS-SSSSSSSSSSSS------------------------S-----------S--------------------
--------------------S--------------------------S--------------------------------
------S-------S-----------------S-----S---SSS---------------S-S--------------S--
-------------------------------------------------------------------S------------
-----------S-------------------------------------------S--------S-------S--S----
--------S------------------S-----------S----------------------------------------
-------------------------------------S--------------S------S--------------------
---------------S--------------------------------------SS------------------------
---------------------------------S-------------S------------------
>forward_862
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------------------------------------------CAAATCGCTGAGGAGCCTCC------------------
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>reverse_3988
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-------------------------------------------------------------------TACCATGCGGATG
TGACACC-------------------------------------------------------------------------
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------------------------------------------------------------------
