>input_sequence_71268
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---------------------------------------------------------------------ATGGCGATGAC
TCTCGAAGAAGTGCTCTCCAAGCAGGCTGCCGACCTAGCCGCCATCTCGCCGGCGCCGGTGAGGAAGGCCGTGGATGCAC
TGGCGCGCAGCAGCCACGCCCGCGCTGCCGCCGATGCCCTGGTCTACCTCTCTGTGGGCACGACCTGCACGATGTTCGCG
GCCGCCTTCCTCACCATCTTCGCGGACCTGGCCTGCGCCCGCGGCTGGGGCTGCACCCCGGCCTATATCCTGTCCGAGAT
AGCAGACTATCTATCCACACCTGTCCTGCTTCTCCTGCCGCCGGCGCTCGTGCTCTTCTTCCTCCGCGCCGCCGGCTGCA
GGACCAAGGTACGTACGTGCTCATCACTCACTCTGCTCCATGGTTCTGCTTCCCGTGATGCTGATGAATTCACTGTGTAA
TGTGATAGGCGGCGGCGGACGCGGAGAGCCTCATCGTGAAGAATGACGAGGAGCCAACCCTTCTGTCGCCGTCGCCGCTG
GCCTTGGCAATTCTTTGGCTTTTCATTGGGTCGGCATCGATGGGAACCATCTCTTTCCTTCTTTTTAAGTGTGGACATAC
AGAGATCTCCGACCTTCTCGGCTACGCGGCTCTCTTGTGCACGTTCATGTGGGAAGCCCTCGTCTATGTCCGCGCTGCAG
TGGCGCTGTGGAGGATGAATCCCGGGCCAAGCAACATGGTGGCTGCAGAGTAG---------------------------
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---------------------------------------------------
>chr7D_1_TraesCS7D01G048500
TATTGCCCAGAACTGAAACTCTAGCTAATCAC---ATAGTGGCACGTTAAGTGATTCGCACATCACTAACTCGTTCTCTC
TCTCTCTTTTGCTCATAAGTCCATCATCG--ACATCACGTATACTAGAAAAAGAAATCAA----GGCAAGAACCCTAGAT
-CAATCCATGTACTTTGTCCTATCTGAAAAATATGAGAGAATCTATACTACATTGCATCAGCAAGAACATAACTATATAC
TACACTACTACCTCATACTTTGTCCGGTTGATTTGAAATATGAGAATCTTTTAGATTCCGACAGATAGGATTGATTTTGA
AGATTCACATA-GTACTCACTCAAACAGTTATATTCTTGCAGGGGTTAGGAGAA----TTGTGTGGTAAAATGTAATTAA
ATCGATCATGAGCACTATGAAACATTATAGGATACC-TAATGACCATTTATTTCCTTCCTTT----AGATGTCCACGTAA
TTCAATCTTTGTTTTCAATGACC-----ACCTCTTACTACTGTGCTTTTTTCTCTAGTGCACCACGCTATTGACGAAAAC
TGAAACCTGTGCCAAATTCTTTACTGCTAGGAGGGTATCCTAAAATGGCACAAGCGAGAGATTAGACAACAACGCATTTT
TTTTCTTTCTCACTCCACAATGCTA---CTCGACAACAACCACCTATAGG----ATATAGCACCGTATAATTTGTCCATC
----ATCGTGTCAGCAAAATCTAAAGCTACTTATTCTAAAAAATACTT--------------------------------
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-------------------------------------AAAAAAGGAAAGTTGA---------------------------
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-------------------------------TGCATAGAATTGAAGAT--------------------------------
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----------------------------------------------------------------TAGTCGCTGTAAAATG
CATAAGGATGACACAGGAAATAGTTGGATTCTTTGAATAATCATGAGAAATTCCTGCTCTAATTTTGATTAGTACGTGCA
AGAAAACACTCGTACGCACGTTTGCCACAGCTTGCAGCTCACTATAAAAGCC-CCAAAGGTCCCCAGGCCATAACACCAG
CTAGAAGC------CACACCAGGTAAGTCAAAGACCAGACAC---CAGACCACTTCACTCCACGTCCAAATGGCGATGAC
TCTCGAAGAAGTGCTCTCCAAGCAGGCTGCCGACCTAGCCGCCATCTCGCCGGCGCCGGTGAGGAAGGCCGTGGATGCAC
TGGCGCGCAGCAGCCACGCCCGCGCTGCCGCCGATGCCCTGGTCTACCTCTCTGTGGGCACGACCTGCACGATGTTCGCG
GCCGCCTTCCTCACCATCTTCGCGGACCTGGCCTGCGCCCGCGGCTGGGGCTGCACCCCGGCCTATATCCTGTCCGAGAT
AGCAGACTATCTATCCACACCTGTCCTGCTTCTCCTGCCGCCGGCGCTCGTGCTCTTCTTCCTCCGCGCCGCCGGCTGCA
GGACCAAGGTACGTACGTGCTCATCACTCACTCTGCTCCATGGTTCTGCTTCCCGTGATGCTGATGAATTCACTGTGTAA
TGTGATAGGCGGCGGCGGACGCGGAGAGCCTCATCGTGAAGAATGACGAGGAGCCAACCCTTCTGTCGCCGTCGCCGCTG
GCCTTGGCAATTCTTTGGCTTTTCATTGGGTCGGCATCGATGGGAACCATCTCTTTCCTTCTTTTTAAGTGTGGACATAC
AGAGATCTCCGACCTTCTCGGCTACGCGGCTCTCTTGTGCACGTTCATGTGGGAAGCCCTCGTCTATGTCCGCGCTGCAG
TGGCGCTGTGGAGGATGAATCCCGGGCCAAGCAACATGGTGGCTGCAGAGTAGCCCTTGCGCCGGATCATCGACTTACTA
AGGTAAGTGGCATTAATTAAGCTAAGCCGAACATCAACATCACACTTTCTCAAAATTAAGTATTGTAGCGGAACATCGAG
TGCTTTTGTACCAACAAATTGGTAGAAGATGATGCGAGTATATGTTAAGTCAAGTACAGTAGTACTCCCTCTGTCCCATA
ATATAAGAACGTTTTTGACACTATACTAATGTCAAAAACGTTTTTATATTATGGGACGGAGGGAGTAGAATTTATCAGTC
GGTTGGTTCTCCGTGTTTGTTATCAACTGAATGTGTAATTGTTGTCATCAGTTATCACAAAGCTCCAATGCTAATCGAGT
GCTTTTGTACCAACAAATTGGTAGAAGAGGATGCAAGTATATGTTAAGTCAAATACAGTAGTCTAGAATTTATCCGTTGG
TTGGTTCTCCACGTTTGCTATCAACTGAAAGTGTAATTCTTGTCATCAGTTATCAGAAAGGTCCAATGCTACTCTCTTGT
AAACTGCCACGTGTTGGTTGAGATCATACAATAATAATTTTTTTTCTTGATCCTAATTTTTTGCACTTGATCTTTCTCTC
GTCTCAACTTGAAACACTATTGATCCTGATATAATTTCGTCGTTCACCGACCACTAATTCACTCCACACCCAGTTGGTAG
AAGATGATGCAAGTAATGTTCAAGTCAAGTAGTGGAATG-----TATCAGTTGGTTC--------TGCATGTTTGGTATC
AACTGAAAGTATATATAATTGTTGTCATCAGTCATCACCAAGCACCAATGCTACT---CTTGTAGTACTAAACTGCCACA
CGATGGTAGAGATTGATAGGAC-------------------GATCTTATAATTTTTGTACTTTATAGTTTCATTTTGTGC
TAAACTGCAAATGACATTGATGTTGACACAAGTTCGTCCTTTAATCGCCAGGTGCGCAGGATTTCAAGCCGAAAGCTC--
-CAAGGTGATGGAGAGTGCTACGCAGTGCAGGAGCGCTGCTGTTTGCCTGT
>chr4A_1
TATCGCCTAGAATTGAAACACAAGCTAATCAC---ATAGTGGCATGACAAGTGAACCACACATCACTAACTAATCA----
TGTCCCGTTTGCTCATAAGTCAATCATCACGTCGTCACAC--GCTAGAAAGATAAATGAA----GGCAAGAACCTCTAGG
CCAATCCACACACTTTGTCCTATTTTGCAAATATGAGAAAAAGTA--------------AGCAAGAACAGAAGCTATG-C
TACACTGCTACAACACAGTCCGTCCCATTGATTTGAAATATCATAATAACATAGATTCCCATGGATAGGATTAGTTTTGA
AGATTCACA-A-GTACTTACTCGAACAGTGCTATTCTCGGAAGATTTAGGAGAAACATTTGTGTTTTAAAATGTAAGTAA
ATCATTCATGGTCACTTTTAAAAATTACCGGTACCTGTAATGAAAATTTCTTTTGTTTGTTAATTAAGATATCCATATAA
TTCAGAGTCTATTCTCAGTGGCCACCATACCTTTTACGACTCTGCTTTTTTGTGTAGTGCACCG----------------
---AAACCTTCCCAAAGTCTCTACT---AGGAGGGTGTCCTAAAATGGCACAAACAAGTGATTAGACAACAATGCGTCC-
TTGTCTTTTTCACTCCACAATGCTAGTACTCGACAATATCCACCCATCGGCTATATATAGCACCGAATGATTTGTCCATC
ATCGATCGTGTCAGCAAAATCTAAAGCTACTTCTAAAAAA----------------------------------------
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---------------------------------------------------
>chr7A_1
TATTGCCTAGAACTGAAACACAAGCTAATCACGTAATAGTAGCATGACAAGTGAACCACACATCACTAACTAACC----C
TGTCCCTTTTGGTCATAAGTCAATCATCA--TCGTCATGC--ACTAGAAAGATATATAAACGAAGGCAACAACCTCTAGG
CCAATCCACACACTTTGTCCTATTCGGAAAATATGAGAAAAACTA--------------AGCAAGAACAGAAGCTATG-C
TACACTGCTACAACATACTTTGTCCCATTGATTTGAAATATCATAATAACATAGATTCCCATGGATAGGATTAGTTTTGA
AGATTCACA-AAGTACACACTCGAACAGTGCTATTCCTGGAATAGTTAGGAGAAACTTTTATGTTTTAAAATGTAATTAA
ATCGTTCGTGGTCAATATGAAACATTACCAGTACTTGTAATGAAAATATCTTTCCTTCTTTAATTAAGATGTCCATATAA
TTTAGACTCTATTCCCAATGGCC-----ATCTTTTATGACTCTGCTTTTTTCTGTAGTGCACCACACTATCAGTGAAAAA
CCCAAACCTTCCAAAAGTCTGTACA---AGGAGGGTGTCCTCAAATGGCACAAACAAGT---------------CGTCC-
TTGTCTTTTTCACTCCACAGTGCCAGTACTCGATAACAACCACCTATAGGCTATATATAGCACCGAATGATTTGTCCATC
----ATCGTGTCAGCAAAATCTAAAGCTAATTAAAAAAATCTAAAATTACCGGTACCTGTAATGACAATTTATCCCCTTC
GTTAAGTAAGATGTCCATATAATTAATGGTATATTCTCAATGGCCACCTTTTATGACTACTTTTTCCTTATAGTGGACCA
TGCTATCGCTGGAAAACCAAAACTTTCCCAAATTCCCTACTAGGAGGGTGTCCTAAAATGGCATAAAAGGTGATTAGAAA
ACAGTGTGTCCTTGTCCTTATCACTCCACAATACTACTCGACAACAAAAATCTATAGGCTATAGCACCTAATGATTTGTC
CATCAGCACGCCAGCAAAAATCTAAAGCTACTTTTCAAAGAAAGGAAAGCCGCCGCTGGTTTAATTCCACATATTTGCAC
TAGCGACCATTAATTCTAGTTCTAATCTTTAGGTCGCTCATGTCACTTTTGTCATCATCTTCTTCTAATGGGATTGATTG
TTATACATGTTCTTCTTCAAATGGGATTGGGTAATAAATGATACCCATGGTAGTCGATGACGGATAGAATGGTTTTCGGA
GAGAATATGGTCATATATAGTGCGTGAAATAATACCTCTTACCAAAATGCAGCGACGCCATCACGACATCATATCACCGT
TCTAATTCTAGTTCTAATCTTTAGTTTCCTCGTGTCACTTTAGTCAACTTCTTCAAATGGGATTGACGGCAGGGCACGCC
CCTACCTTCTACAAATCAGGCTACTACTATTACAAAAGGTAATACCACTACTAGCAACATGCAATTAGCATTGCACCGCA
CAAGTTTTTGGGTGTCTTGTATGGTTGCGTCTTAATCACAAATTGGCATTCCTGGCATGTTTTTAACAAGGGGTAAGTAG
GTATTGGTGTATCATTTTAAAATCTGGTGAACATGTTAACATCTTGTTCTATTAAAGATAAATACACTCGTCATGGCCAC
GTTTGGGTGTCTCCAGAGGTTCAGAGCTTATTTACAAAGCTATACACCCACTACAACTTTCTTTTGTTTCCATCACTAAT
TGTACCGTGCAGTTCCATTTTTACACCTTATTGCCTAGAACTGAAAATCAAGCTAATCACATAGTGGCATGGCAACTAAT
CACACATCACTAACTAATCCTATCCCTTTTGCTCATAAGTCAATCATCCGCGTCACGCACTAGAAAGATATATGAAGGCA
AGAACCTCTAGGCCAATCCACGCAGTTTGTCCTGTTTGGAGAATATGAGAAAAACAACGCGAGAACAGAAGCTATGCTAC
ACTGCTACAACACAGTTCGCCCCGTTGATTTGAAATATCATAATAACATAGATTCCCATGGATAGGATTAGTTTTGAAGA
TTCACAAGTACTCACTCGAACAGTGCTATTCCTGGAAAGTTAGGAGAAACTTTTGTGTTTTAAAAGTAATTAAATCGTTC
ATGGTCACTATGAAACATTACCGGTACTTGTAATGAAAATTTCTTTCCTTCATCAATTATGATGTCCATATAATTCAGAC
TCTATTCTCAATGACCACCTTTTACGACTCTGCGTTTTCTATAGTGCACCAGCACCACACTATCGCTGAAAAACCTAAAC
CTTCCCAAAATCTCTACTGGTAGGGTTTCCTAAAATGGCACAAACAAGTGATTGTACAACAATGCGTCCTTTCTCTCCAC
AATGCTAGTACTCACAACAACCACCTATAGGCTATATATAGCACTGAATGATTTGTCCATCATCGTGTCAGCAAAATCAA
AGCTACTTTTCATTAAAACATGACGAGAAACTTGTTAGGTTCCTACATAAGAATATGAGATCAGTAGTGACTGTAAGATG
CATAAGGAGGAAACATGAAATAATTGGATTCTTAGAAAGATCATGAGAAATTCCTGCTTTAAATTTTGAT--TACGTGCA
ACAAACCATC-------------GCCACAGCTTGGAGCTCACTATAAAAGCT-CCCAAGG-GCCCAGGCCATAACACCAG
CTAGAAGG------CACACCGAC--TCACCG---------AC---CAGATCAGTTCACTCCACACCCAAATGGCGATGAC
TCATGAAGAAGAGCTGTCCGAGCTGGCTGCC-------------------------------------------------
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>chr7A_904
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------------------------------------------TATAAAAGTCCCCCAAGG-CCCTAGGCCATAACACCAG
CTAGAACTAGAAGCCACACCGAGTATCACCG---------ACCTGCAGACCACTTTCAC-----------TGGCGATGAC
ACTCGAAGAAGAGCTCTCCAAGCTGGCTGCCGATGTAGCGGCCATCTCGCCGGCACCGGTGAGGAAGGCCGTGGATGCAC
TGGCGCGCAGCAGCCCCGCCCGCGCCGCCGCCGATGCCCTAGTCTACCTCTCCGTGGGCACGACCTGCGCGGTCTTCGCG
GCCGCCTTCTTCACCATCTTCGCGGACCTGGCCTGCGCCCGCGGCTGGGGCTGCACCCCGGCCTATGTCCTGTCCGAGAT
AGCGGACTATCTATCCACACCTGTCCTGCTTCTCCTGCCGCCGGCGCTCGTGCTCTTCTTCCTCCGCGCCGCCGGCTGCA
GGACCAAGGT----ACGTGCTCGTCACTCACTCTGCTCCATGGTTCTGCTTCCCGTGATGCTGATGAATTGATTGTGGAA
TGCGATA---GGCGGCGGACGAGGAGAGCCTCATCGTGAAGAATGACGAGGGGGAAACCCTTCTGTCGCCGTCGCCGCTG
GCCTTGGCAATTCTGTGGCTTTTCATTGGGGCGGCGTCGATGGGAGCCATCTCCTTCCTTCTTTTCAAGTGTGGATATAC
AGAGATCTCCGACCTTCTCGGCTACGCGGCTCTCTTGTGCACGTTCATGTGGGAAGCCCTCGTCTATGTCCGCGCTGCAG
TGGCGCTGTGGAGGATGAATCCCGGGCCAAGCAACATGGTGC-------------------------CATCGACTGACTA
AGGTAAGTTGCATTAATTAAGCTAAGCCGAACATCAACATCTCGCTTCCTCAAA----AGTATTTTATCGGAACATAGTG
---TTTTCTACCAACAAATTGGTACTTC----------------------------------------------------
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-------------------------------------------------------------------------------G
AAGATGATGCAAGTAATGTTCAAGTCAAATGAGTAGAATGTAGATATCAGTTGGACCTATACATATGCATGTTTGCTATG
AAATGAAAGTATA----ATTGTTGTCATCACGCATCACTCATCACCAAACCACCAATACTAGTCTTACTAAACTGGCGTA
CAATGGTAGAGATCAATGGAAGAGCAATAATTTTT---------------------------------------------
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>chr4A_1002
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----------------------------------------------------------------------TGGCGATGAC
ACTCGAAGAAGAGCTCTCCAAGCTGGCTGCCGATGTAGCGGCCATCTTGCCGGCACCGGTGAGGAAGGCCGTGGATGCAC
TGGCGCGCAGCAGCCCCGCCCGGGCCGCCGCAGATGCCCTAGTCTACCTCTCCGTGGGCACGACCTGCACGATGTTCGCC
GCCGCCTTCCTCACCGCCTTCGCGGGCCTGGCCTGCGCCCGCGGCTGGGGCTGCACTCCGGCCTATGTCCTGTCCGAGAT
AGTGGACTATCTATCCACACCTGTCCTGCTTCTCCTGCCGCCGGCGCTCGTGCTCTTCTTCCTCCGCGCCGCCGGCTGCA
GGACCAAGGT----ACGTGCTCGTCACTCACTCTGCTCCGTGGTTCTGCTTCCCGTGATGCTGATGAATTCACTGTGTAA
TGTGATAGGTGGCGGCGGATGCGGAGAGCCTCATCGTGAAGAATGACGAGGAGCTAACCCTTCTGTCGCCGTCGCCGCTG
GCCTTGGCAATTCTTTGGCTTTTCATTGGGTCGGCGTCCATGGGAACCATCTCTTTCATTCTTTTCAAGTGTGGATCTAC
AGAGATCTCCGACCTTCTCGGCTACGCAGCTCTCTTGTGCACGTTCATGTGGGAAGCCCTCGTCTATGTCCGCGCTGCAG
TGGCGCTGTGGAGGATGAATCCCGGGCCAAGCAACATGGTGGCTGCAGAGTAGCCCTTGCGCGGGATCATCGACTTACTA
AGGTAACTGGCATTAAGCTAAG----------------------------------------------------------
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---------------------------------ATAATTTTT------------------TTGCACTTGATCTCTCTCTC
GTCTCAACTTGAAACACTATACATCCTGATATAATTTCGTCGTTCACCGACCACTAATTCACTCCACACCCAGTTGGTAG
AAGATGATGCAAGTATTGTTCAAGTCAAGTAGTGGAACG-----TCTCAGTGT----------------TGTTTGGTATC
AACTGAAAGTATATATAATTGTTGTCTTCAGTCATCACCAACCAGCAATGCTACT---CTTGTAGTACTAAACTGCCACG
CGATGGTAGAGATTGATAGGACAGTAATAATTCTTCTTCTTGATCTTATAAATTTTGTACTTTATAGTTTCATTTTGTAG
TAAACTGCAAATGACATTGATGTTGACACAAGTTCGTCCTTTAATTGCTAGGTGCGCAGGATTTCAAGCCGGAAGCAGCA
GCAAGGTGATGG-----GCTACGTAGTGCAGGAGCGCTGCTATTTCCT---
>SNPs
-------S-----------S-S----------------------S-SS------SS-S-------------SS-SSSSS-
-S--S----------------S------S--S-S-----SSS--------S-S----S----------------SSSSSS
--------SSS------------S--S-----------S--S---SSSSSSSSSSSSSS----------S--SSSSSSS-
------S----SS------------SS--------------S-S---SSSS--------S-SS---------SS------
---------S------------S------SS--------S-S-S--------------------SS--------------
----S-----SS---------------SS--SSS-S-------SS----S--------S--S-------------SS---
----SS--S-S--S------S-----------S----S---S-----------S-----------S----SSSS-----S
SSS--S-SS-S-----S---S----SSS--------S----------------S-S--S-------------S--S-SSS
--S-----S--------------------------------------------------------S--S-----------
----------------------------------SSS---SS-S-S----------------------------------
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---------------------------------------S---------SS-S---------------------------
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----------------------------------S-----S----S----------------------------------
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--------------------------------------------------------------------SS------S---
--------S--S---S------S----------S---SS-------------------S---S---SSS-SS--------
-S---S--SSSSSSSSSSSSSSS-----------S--------------------S----S-------------------
-------S------------SS---SSS-SSSSSSSSSSS-----------------------SS---------------
-----------S-----------S---------SS----S--------------S-------------------------
---------------S---------S--------------S-----------S---------------------------
------------------------------------------------------------------S-------------
---S----------------------------------------------------------------------------
----------SSSS--------S---------------------------------------------------------
---------S--------------------------------------------S-------------------------
-----------------------------------S-----------------------------S---------S----
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--------------------------------------------------------------S-----------------
-----------------------------------------S-S---S------SSSS------S--S--------S-S-
SSS----S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSSSSSSSSSSSS-------------S------
--------------------SS----------------------------------------------------------
-------------------------------------S----------------SS------------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------S--------------------------SS
---------------------------------------------S--S----------------------S----SS--
------------SSSSS------S-----------------S---S-SSSS
>forward_2784
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--------------------------------------------CCAGACCACTTCACTCCACG----------------
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>reverse_4449
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------------------------------------------------CAGGTGCGCAGGATTTCAAG------------
---------------------------------------------------
