>input_sequence_71261
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-------------------------ATGGCCACGCAAGAGCAGCCGTCGC------------CGGGCGCCGGCGCCGCCC
GGCCTCGGAGGCCCCGCGTCCTGGTCGCCGCCTCCGGCAGCGTGGCGGCGATCAAGTTCGAGATCCTCTGCCGGAGCCTC
GCCGAGTGGGCCGACGTCCGGGCGGTGGCGACGGCCTCGTCCCTGCACTTCATCGACAGGGAGTCCTTCCCGAGCGGCGT
CGCCCTCCTCACCGACGCCGACGAGTGGTCCACCTGGCGGAGGATCGGCGACGAGGTCCTGCACATCGAGCTGCGCAAGT
GGGCCGACGCCATGCTCATCGCGCCGCTCTCGGCCAACACCCTGGCCAAGGTAGGC-----A--ATACCGTGAACAGCTG
AACACCGAGTCATGCGGAGTTCCGTTGCTGCTCTGTTTTGACCAC-----TTTTTTCTCTCGATCCGCCGCGCTCAGATC
GCCGGCGGGCTGTGCGACAACCTCCTGACGTGCGTGGTGCGCGCGTGGGACTACAGCAAGCCCATCTACGTCGCGCGGGC
CATGAACACCTTCATGTGGGACAACCCCTTCACTAGGCGACACCTTGACGTCGTCGCCGGCCTCGGCGTCTCCCTCATCC
CTCCGGTGACCAAGCGGCTCGCCTGCGGGGACTACGGCAACGGCGCCATGGCAGAGCCCGCCGAGATCTGCAGGACCCTC
AGGCTCTTCTTCGGCTCACAAGTTCCACTCTGA-----------------------------------------------
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>chr3D_1_TraesCS3D01G143900
TGACCACCTTCGCCTATGTCAACAGGTGAGGCATTAGAGAAAAATAAATACATACCGACATCAACTAAGAAATGCTGTTA
ACATTCGAAG--------ATGCAATGTTGTGCCGACTTCAGCCTTTTTTATACCCTTGGGCATTGCTGTAGGTGGATAAG
TTGGAATTTGAATATGAAAGACTAAAGAAAGATGCCAGCATTTACCATAATCTCCATGAGCAGCTTCAGCTGTCATCGTG
CTACAAACTGGTAACGCGCTTCTGTTCTGCTCACAAGCAAGCACCTTTGCCC-CGTGATATGAACTG-CCAGGTGTTTTG
ACACCAAACCTTTCGTCGTGGCAGATGGAGGAGAGCAACGATGAAGCGGAGAAGAGAATCCGTGAAGGAGCCTTCGCCAA
AGGGGTGCGCGATACCGCCTTCGAGGAACTGCTGGCCGTGGAGAAGAAGGACAACGCTTTCTGGCGTCGTGACGGGAAGC
TGAGGTCGATCTCGGACAGCATGTAGGCAGCGAGAGAGCAGACAAGGCGATTGCATTGATTGT-----CATCGTCGTCGT
CGGTCTAAGACTCCAGGAACCAGAAACTGAATTTGTCCCTTG--GAGAACTTGTCTGTGTTGAAACCATGGACAGTGCGT
GTTGAAACCATGGACAGTGCGATCGTGCTCGTCGAGCTCTCGGGCCTCCCCCCTGCGCCTTGAACTCTTGAGTCATGGCT
TTTAATAAGATCTGAACTGGGCAGATCCGAATGAAAATGTGTTGTCCTTGGGTGGTG---ACTGGTGAATGCGTCTCGAT
GCGATGCTGTGCC------TGTTGCTGCTGCTGCTGCGCTCTGGATCGCTGGCGCA------------ATTTACTGCTGT
TTGTTTCTCCAGCTAACACCGGCCTTTCTTGTCCCCCTCCTGCTGAGTTTGCGATCTAGA-------G-----GTGTGAG
TGCCGCAATTACTTCCCATCTCCCTTC-----------AGTGATTTCAGAGAGTTGCCTTTTCATTTCCAACACGTAGAG
CCATCGTAA----TTCACAAGTGCAATGGCCACGCAAGAGCAGCCGTCGC------------CGGGCGCCGGCGCCGCCC
GGCCTCGGAGGCCCCGCGTCCTGGTCGCCGCCTCCGGCAGCGTGGCGGCGATCAAGTTCGAGATCCTCTGCCGGAGCCTC
GCCGAGTGGGCCGACGTCCGGGCGGTGGCGACGGCCTCGTCCCTGCACTTCATCGACAGGGAGTCCTTCCCGAGCGGCGT
CGCCCTCCTCACCGACGCCGACGAGTGGTCCACCTGGCGGAGGATCGGCGACGAGGTCCTGCACATCGAGCTGCGCAAGT
GGGCCGACGCCATGCTCATCGCGCCGCTCTCGGCCAACACCCTGGCCAAGGTAGGC-----A--ATACCGTGAACAGCTG
AACACCGAGTCATGCGGAGTTCCGTTGCTGCTCTGTTTTGACCAC-----TTTTTTCTCTCGATCCGCCGCGCTCAGATC
GCCGGCGGGCTGTGCGACAACCTCCTGACGTGCGTGGTGCGCGCGTGGGACTACAGCAAGCCCATCTACGTCGCGCGGGC
CATGAACACCTTCATGTGGGACAACCCCTTCACTAGGCGACACCTTGACGTCGTCGCCGGCCTCGGCGTCTCCCTCATCC
CTCCGGTGACCAAGCGGCTCGCCTGCGGGGACTACGGCAACGGCGCCATGGCAGAGCCCGCCGAGATCTGCAGGACCCTC
AGGCTCTTCTTCGGCTCACAAGTTCCACTCTGAACACTCTGCAGCTCGCCCAAGTTCTTCAGTATCTCTCACTCTGTTTG
CCTGCTGTACGAGATACATCTATCTGCAAAAGCTTTCTCTTCTATCAAACGTTTACAATG---TGATCCTCCTCTATGGC
GCGTCTCTGGTCATCCATTTCGCGATACAAATCGTCGAGCACTCTGAAGACGTCCTCAGCTCTGGGCATCGACGGCGGGA
CGCTGCCGGCCATGAAGGCAAACACCTTGTTCTTCACCTCAACCCAGCTCTGCCCCGGGTTCTTCCTCAAGCCGGCCTCC
CTCGTCATCACCCTCACCCTCTTGGAGTCGTCCCACATCCCGCACGCGGCGTACAGGTTCGTGATCAGCGTGTGGTTGCC
GGTGGTCACCACGCCGGCCTGCAGAGCCTTCGCTATGGTGGCTTCGGCCATTGCTGCGTCCCCATGGATCCTGCAGGAGT
TGAGCAGCGCGCCCCACACGCACAGGTCGGCTCCCATCGGCATCGTCTCGATGAACTCGGACGCCTCCTTGAGCAAGCCA
GCCCGCCCCAGGAGGTCTACCATGCACGTGTAGTGCTCCATGGATGGGGAAATCTTGTGCTCCAGTATCATCTGATCGAA
CAGACGGCGGCCCTCGGACACCCGCCCTGCGTGGCTACACGCGGACAGAACGGCGACGAAGGTGACACCGTCAGGATCGA
CCTTAGCTTCTGCCATGTCTGTGAACACTGCCAGGGCGTCGTCGCACAGGCCGTGCATCCCATAGCCGGCCAACATAGAG
TTCCAGGAGACCAGGTCCCTGCTCTTCATACCGTCGAACACCGTGCGTGCGTCGGCGACTCTCCCGCACTTGGCGTACAT
GTTGATGAGCCCGTTCGCGACGAGCGAGTGCCGGTCGACCATGGATCTGATCGCATCGGCATGGACCTCCCGACCGAGCC
GCACCGCCAGCTGCTCGGTGCAGGCTGAGAGAACGGTAGCTAAGGTCACCACGTTCGGCGAAAGCCATTGCTGTTG
>chr3B_1
TGACCACCTTCGCCTATGTCAACAGGTGAGGCATTAGAGAAAAATAAATCCATACCGACATCAACTAAGAAATGCTGTTA
ACATTCGAAG--------GTGCAATGTTGTGCCGACTTCAGCCTTTTTTATACCCTTGGGCATTGCTGTAGGTGGGTAAG
TTGGAATTTGAATATGAAAGACTAAAGAAAGATGCCAGCATTTACCATAATCTTCATGAGCAGCTTCAGCTGTCATCGTG
CTACAAACTGGTAACGCGCTTCTGTTCTTCTCGCAAGCAAGTACCTTTGGTC-CGTGATATGAACATACCAGATGTTGTG
ACACCAAACCTTTCTCCGTGGCAGATGGAGGAGAGCAACGATGAAGCGGAGAAGAAAATCCGTGAAGCAGCCTTCGCCAA
AGGGGTACGCGATACCGCTTTCGAGGACCTGCTGGCCGTGGAGAAGAAGGATGACGCCTTCTGGCGTCGTCACGGGAAGC
TGAGGTCGATCTCGGACAGCATGTAGGCAGCGAGACAGCAGACTAGGCGATCGCACTGACTGT-----CATCGTCGTTGC
CAGTCTAAGACTCCAGGAACTAGAAACTGAATTTGTCCCTTGGTGAGAACTTGTGTGTGTTGAAACCATGGACG------
----------------GTGTGATCGTGCTCGTCAAGCTCTTGGGCCTCCCCCTGT-GCCTTGAACTCTTGAGTCATGGCT
ATGAATAAGATCTGAACTGGGCAGATCCAAATGAAAATGTGTTTTCCTTGGGTGGTGA----------------------
------------C------TGTTGCTGCTGCTGCTGCGCTCTGGATCGTTGGCGCA------------ATTTACTGCTGT
TTGTTTCTCCAGCTAACACCGGCCCTTCTTGTCCCCCTACTGCTGAGTTTGCGATCGAGACTCGAGAG-----GTGTGAG
TGCCGCAATTACTTCCCATCTCCCTTC-----------AGTGATTTCAGAGAGTTGCCTTTTCATTTCCAACACGTAGAG
CCATCGTAA----TTCACAAGTGCAATGGCCACGCGAAAGCAGCCGTCGCAGGGCGCGACGCCGGACGCTGCCGCTGCCC
AGCCTCGGAGGCCCCGCGTCCTGGTCGCCGCCTCCGGCAGCGTGGCGGCGATCAAGTTCGAGATCCTCTGCCGGAGCCTC
GCCGAGTGGGCCGACGTCCGGGCGGTGGCGACGGCCTCGTCCCTACACTTCATCGACAGGGAGTCGTTCCCAAGCGGCGT
CGCCCTCCTCACCGACGCCGACGAGTGGTCCGCCTGGGGGAGGATCGGCGACGAGGTCCTGCACATCGAGCTGCGCAAGT
GGGCCGACGCCATGCTCATCGCGCCGCTCTCGGCAAACACCCTGGCCAAGGTAGGTACTGTA--ATACCGTGGACACACC
TGC------------GGCGTTCTG-TGCTGTTCTGTTTTGATA----TTTTTTTTTCTCTCGATCTGCCGCGCTCAGATC
GCCGGCGGGCAGTGCGACAACCTCCTGACGTGCGTGGTGCGCGCGTGGGACTACAGCAAGCCCATCTACGTCGCGCCGGC
CATGAACACCTTCATGTGGGACAACCCCTTCACCAGGCGCCACCTCGACGCTGTCGCCGGCCTCGGCGTCTCCCTCATCC
CTCCGGTGACCAAGCGGCTCGCCTGCGGGGACTACGGCAACGGCGCCATGGCAGAGCCCACCGAGATCTGCAGGACCCTC
AGGCTCTTCTTCGGTTCACAAGAGCCACTCTGAAAGACTTG--------------------------CTCACTCTGTTTG
CCTGCTGTACGAGATAGGTGTATCCGCAAACACTTTCTCTTCTATCGAACGCTTACAATGTGATGATCGTCCTCCATGGT
ACGTCTCTCGTCGTCCATTGCGCTGTACAAATCGTCGAGCACCCTGAAGATCTCCTCAGCTCTGGGCATTGACGGGGGCA
CACTGCCGGCCACGAAGGCGAACACCTTGTTCTTCACCTCGATCCAGCTCTGCCCCGGGCTCTTCCTCAAGCCGGCCTCT
CTCGTCATCACCCTCACCCTCTTGGAGTCGTCCCACATCCCGCACGCGGCGTACAGGTTCGTGATCAGCGTGTGGTTGCC
GGTGGTCTCCGCGCCCGCCTGCAGAACCTTCGCGATGGTGGCTTCGGCCATGGCTGCGTCCCCATGGATCCTGCAGGAGT
TGAGCAGCGCTCCCCAAACGCACAGGTCGGCTCCCACCGGCATCGTCTCGATGAGCTCAGACGCGTCCTTGAGCAAGCCG
GCACGCCCCAGGAGGTCGACCATGCACGTGTAGAGCTCCATGGACGGGGTAATCTTGTGCTCCCGCATCATCTGATCAAA
CAGCCGGCGGCCCTCCCACACGCGCCCTGCATGGCTGCACGCCGACAGAACGGCGACGAAGGTGACACCGTCAGGATCGA
CCTTAGCTTCTGCCATGTCTGTGAACACTGCCAGGGCGTCGTCGCACAGGCCGTGCATCCCATAGCCGGCCAACATAGAG
TTCCAGGAGACCAGGTCCCTGCTCTTCATACTGTCGAACACCGTGCGTGCGTAGGCGACTCTCCCGCACTTGGCGTACAT
GTTGATGAGCCCGTTCGCGACGAGCAAGTGCCGGTCAACCATGGATCTGATCGCGTCGGCATGGACCTCCCGACCCAGCC
GCACCGCCAGCAGCTCGGCGCAGGCTGAGAGAACGGTAGCTAAGGTCACCACGTTTGGCGAAAGCCATTGCTGTTG
>chr3A_1
TGACCACCTTCGCTTATGTGAACAGGTGAGGCATTTGAGAAGAGAAATCCCATACCGACATCAACTAAGAAATGCTGTTA
ACATTCGAAGATGCAGACATGCAGTGTTTTGCCGACTTCAGCCTTTTTAATAG-CTTGGGCATTGTTGTAGGTGAGTAGA
TTGGAATTCGAATATGAAAGACTAAAGAAAGATGCCAGCATTTACCATAATCTCCATGAGCAGCTTCAGCTGTCATCGTG
CTACAAACTGGTAACGATCTTCTGTTCTGCTCACAAGCAAACACCTTTGCCCCCGTGATATGAACTG-CCAGGTGTTTTG
ACACCAAACCTTTCACCGTGGCAGATGGAGGAGAGCAACGATGAAGCGGAGAAGAGAATTCGCGAAGGAGCCTTCGCCAA
AGGGGTGCGTGATACCGCCTTCGAGGACCTGCTGGCCGTGGAGAAGAAGGACGACGCTTTCTGGCGCCGTGACGGGAAGC
TGAGGTCGATCTCGGACAGCATGTAGGCAGCGAGGCAGAAGACAAGGCGATCGCACCGACTGTGTCATCTTCGTGGTCAT
CAGTCT-AGACTGCAGCAACTAGAAACTGAATCTGTCCCTTG--GAGAACTTGTGTGTGTTGAAACCATTGGCG------
----------------GTGTGATCGTGCTCGTCGAGCTCTGGATCCTCCTCCTGTGT-CTTGAACTCTTGAGTCGTGGCT
TTCAATAAGATCTGAACTGGGCAGATCCAAGTGAAAATGTGTTGTCCTTGGGTGGTGGTGACTGATGAATGCCGCTCGAT
GTGATGCTGTGCCTGTTGTTGCTGCTGCTGCTGCTGCGCTCTGGATCGCTGGCGCTGGCGCTGGCGCCATTTACTGCTGT
TTGTTTCTCCAGCTAACTCCGGGCCTTCTTGTCCCCCTCCTC---AGTTTGCGATCTACA-------GATTTCGTTTCAG
TGCCGCAGTTACAGTGTACTTGTTACCTCCCTTCACCTAGTGATTTCAGAGAGTTGCCTTTCCATATCCAACACGAAGAG
CCATCAGAGTAATTTCACCAGGGCCATGGCCACGCGAGAGCAGCCGTCGCAGGGCGTGACGCCGGACGCTGCCGCCACTC
AGCCTCGGAGGCCCCGCGTCCTGGTCGCCGCCTCCGGCAGCGTGGCGGCGATCAAGTTCGAGGTCCTGTGCCGGAGCCTC
GCCGAGTGGGCCGACGTCCGGGCGGTGGCGACGGCCTCGTCCCTGCACTTCATCGACAGGGAGTCGTTCCCGAGCGGCGT
CGCCCTCCTCACCGACGCCGACGAGTGGTCCGCCTGGGGGAGGATCGGCGACGAGGTCCTGCACATCGAGCTGTGCGAGT
GGGCCGACGCCATGCTCATCGCGCCACTCTCGGCCAACACCCTGGCCAAGGTAGGTACTGTAAAATACCGTGGACACACC
GTG------------GGCGTCTCGTCGCTGTCCTGCTTTGACCATTTTTTTTTCTTCTCTCGATCTGCCGCGCTCAGATC
GCTGGCGGGCTGTGCGACAACCTCCTGACGTGCGTGGTGCGCGCGTGGGACTACAGCAAGCCCATCTACGTCGCGCCAGC
CATGAACACCTTCATGTGGGACAACCCCTTCACCAGCCGCCATCTCGACGCCGCCGCCGGCCTCGGCGTCTCCCTCATCC
CTCCGGTGACCAAGCGGCTCGCCTGCGGGGACTACGGCAACGGCGCCATGGCAGAGCCCGCCGAGATCTGCAGGACCCTC
AGGCTCTTCTTCGGTTCACAAGAACCATTCTGAAAGACTTG--------------------------CTCACTCTGTTTG
CCTGCTGTACGAGATAGGTGTATCCGCAAACACTTCCTCTTCTATCAAACGCTTACAATGTGGTGATCGTGCTCCATGGT
GTGTCTCTCGTCGTCCATTTCGCTGTACAAATCGTCGAGCACCCTGAAGATCTCCTCAGCTCCGGGCATCGACGGCGGCA
CACTGCCGGCCACGAAGGCGAACACCTTGTTCTTCACCTCGATCCAGCTCTGCCCGGGGCTCTTCCTCAAGCCGGCCTCT
CTCGTCATCACCCTCACCCTCTTGGACTCGTCCCACATCCCGCACGCGGCGTACAGGTTCGTGATCAGCGTGTGGTTGCC
GGTGGTCTCCGCGCCGGCCTGCAGAACCTTCGCGATGGTGGCTTCGGCCATGGCTGCGTCCCCATGGATCCTGCACGAGT
TGAGCAGCGCTCCCCACACGCACAGGTCGGCTCCCACCGGCATCGTCTCGATGAGCTCAGACGCGTCCTTGAGCAAGCCG
GCACGGCCCAGGAGGTCGACCATGCACGTGTAGTGCTCCATGGATGGGGAAATCCTGTGCTCCAGTATCATCTGATCAAA
CAGACGGCGGCCCTCCGACACGCGCCCTGCGTGGCTGCACGCCGACAGAACGGCGACGAAGGTGACGCCGTCAGGATCGA
CCTTAGCTTCGGCCATGTCTGCGAACACTGCAAGGGCGTCGTCGCACAGGCCGTGCATCCCGTAGCTGGCCAACATGGAG
TTCCAGGAGACCAGGTCCCTGCTCTTCATACCGTCGAACACCGTGCGTGCGTAGGCCACTCTCCCGCACTTGGCGTACAT
GTTGATGAGCCCGTTCGCGACGAGCGAGTGCCGGTCGAGCATGGATCTGATCGCGCCGGCATGGACCTCCCGACCCAACC
GCACCGCCAGTAGCTCGGCGCAGGCTGAGAGAACGGTGGCTAAGGTCACCACGTTCGGCGAAAGCCATCGCCGTTG
>SNPs
-------------------------------------------------S------------------------------
---------------------------------------------------------------------------S----
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--------------SS----------------------------------------------------------------
---------------------------S------------------------S---------------------------
-----------------------------------S---------------S---S---S--------------------
-S------------------S---------------------------------S------------------SSSSSSS
SSSSSSSSSSSSSSSS---S--------------------S-----------SSSS------------------------
--S-------------------------S-----------------------------------S-------SS------
-S------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
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-----------------------------------S-----------------------------S---S-S--------
S-------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
-------------------------------S-----S------------------------------------------
-------------------------------------------------------S----------------S---SSSS
SS-SSSSSSSSSSSS--S------------S-------------S--------------------S--------------
----------------------------------------------------------------------------S---
---------------------------------S-----S-----S----S-----------------------------
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--------------S-------SS----------SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSS-------------
----------------SS-S----S-----SS-------------------S----------------S-----S----S
--------S---S----------SS-----------------S-------SS--------------------------S-
-S----------S------S--------------------S-S----------------S-------------------S
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-------S--S--------------S-------S-----------------S----------------------------
----------S-------------------------S-----------------S---S-----S--------------S
--S--------------S-----------------------------------------------------------S--
---------------S-----S--------------S-----S-------------------------------------
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----------------------------------------------------S---------------------------
------------------------------------------------------S--------------------S----
-----------S------S---------------------------------------------------------
>forward_649
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---------------------------------------------------------------------GGACAGTGCGT
GTTGAAACC-----------------------------------------------------------------------
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>reverse_1803
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------------------------------------------AGCTCGCCCAAGTTCTTCAG------------------
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