>input_sequence_71247
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---------------------ATGGGGAGATCGCCGTGCTGCGAGAAGGCGCACACCAACAAGGGCGCGTGGACGAGGGA
GGAGGACGAGCGGCTGGTGGCCCACGTCCGGGCGCACGGGGAGGGCTGCTGGCGCTCGCTGCCCAGCGCCGCCGGCCTGC
TGCGCTGCGGCAAGAGCTGCCGCCTCAGGTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCAGCCGCGAC
GAGGACGAGCTCATCGTCAAGCTCCATAGCCTCCTCGGCAACAAGTGGTCGCTCATCGCCGCGCGCCTGCCCGGGAGGAC
GGACAACGAGATCAAGAACTACTGGAACACGCACATCCGGAGGAAGCTGCTGGGCAGGGGGATCGACCCGGTCACGCACC
GCCCCCTCACCGA---------CGCCGCCACCGTCTCCTTCGTCCATCCTGCAGAGGCGACCAA---G---CAACAGGCG
ACGGAGGAGAGGAAGCCGCCCAGATGCCCGGACCTCAACCTGGACCTCTGCATCAGCCTGCCGTTCCAACAGGAGGAGGA
ACGGCCGCCGGCGAGAGCGTGCGCCAAGCCGGTGAAGATGGAGCAGCTGCAGCAGGGCGGCA------TCTGCTTCCGCT
GCAGCATCCTCAGAGTGAGAGGAGCGGCGACGGAGTGCAGCTGCGGCAGCAACTTCCTGGGCCTCAGGGCCGGCATGCTC
GACTTCAGAGGCCTCGAGATGAAATAG-----------------------------------------------------
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>chr7D_1_TraesCS7D01G272400
ATTTCCATCTATTTTTTAACCAATTTCCGTTGGATCATCTATTCGGATCAAGGCGCAGATGGATGGTTGCAGACACGTGC
CCCTGCGAATTTTCACCCGACATTTGAGGAGCTAAGGTATACGAGGCAGTTTGAGAGGTTAAATTATAT-GAGTTAAGGT
ATATAGGGGCACTTTAAGAGATTAAATTATAAGGGATCAGCTAGAGCTGCACTAA-AAGGCCAATCTATGTTGAAGGACA
CTCAAGTTCAATGATAAGATCCAAATGAGGAAGAAGAAACTATATAATCCAAGT-TATAAAAATCTACCCTACCCTACGT
TACATTGTGATACGAAGGGAGTAGGAACCATGTTGTAGCAAACTAGAGAAAGGAAGAAATATCATTTGAGTTCCTCCCTA
TCTGCCTATCTGGA---TATTTCAGGACACGGTGGCGGGAAAACC---TAGGGCGAGGGGCACGCAAATTGGGTTTGTGG
ATGCAGG---CAAGGCAAAGTAGGCAGGCCATACCCATCACCGCCCG-----------------CACCGCACACGCCGAC
GCCAACGCCACCGTTCACCGTTACGCACTCTCCAGCAGCCTACCTTCCCCTTTAGTT---------TAGTATAGTATAGA
TAGATAGAGTAACA--GGTGCTTTCGCTTTGTACCTACTTCCTCTGCCGCCTTGC-----ATGCTCGCTCGCGCTCGGGC
TGGCGTGGCAGGCGGTCGCGCACGGCGAGAAAAATCCACGAGGCCCGGTCCGGTCGTGTCATGCCGTCACCCTAACCACC
TCGACTCCCCTTCCACCAAACCAACCAACTCATCATCATCATCATCATCCTCTCTTTCTCTCTCCCG----CGCGCGCGC
CTACCTTCCCTTCC---CAAGAGAGCAAGCAGAGGAGAGGAGCCGCCTATATAAATCCGCCCGCCCTTTCCTCCGCCCAA
TCTAGCCCGCACACGCG-----ACGCCACACCCACACGTGAGCCAAG---CAAAAGCAAGGCGGACAGACGTTCACACCA
CCATCAAAGAAAGAT-CGGCCATGGGGAGATCGCCGTGCTGCGAGAAGGCGCACACCAACAAGGGCGCGTGGACGAGGGA
GGAGGACGAGCGGCTGGTGGCCCACGTCCGGGCGCACGGGGAGGGCTGCTGGCGCTCGCTGCCCAGCGCCGCCGGCCTGC
TGCGCTGCGGCAAGAGCTGCCGCCTCAGGTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCAGCCGCGAC
GAGGACGAGCTCATCGTCAAGCTCCATAGCCTCCTCGGCAACAAGTGGTCGCTCATCGCCGCGCGCCTGCCCGGGAGGAC
GGACAACGAGATCAAGAACTACTGGAACACGCACATCCGGAGGAAGCTGCTGGGCAGGGGGATCGACCCGGTCACGCACC
GCCCCCTCACCGA---------CGCCGCCACCGTCTCCTTCGTCCATCCTGCAGAGGCGACCAA---G---CAACAGGCG
ACGGAGGAGAGGAAGCCGCCCAGATGCCCGGACCTCAACCTGGACCTCTGCATCAGCCTGCCGTTCCAACAGGAGGAGGA
ACGGCCGCCGGCGAGAGCGTGCGCCAAGCCGGTGAAGATGGAGCAGCTGCAGCAGGGCGGCA------TCTGCTTCCGCT
GCAGCATCCTCAGAGTGAGAGGAGCGGCGACGGAGTGCAGCTGCGGCAGCAACTTCCTGGGCCTCAGGGCCGGCATGCTC
GACTTCAGAGGCCTCGAGATGAAATAGA---AATTTGGGAATAATTATTCGATCAAACTTT----CTGCTGTAAATTGTT
GCTCCCTC---CTACCAAGTTTTTATTTAGCTCTTAGGAAAAGAAATACTCCTACAGTACTAGTAGATGGTGAGGAGGAG
ACTGGTATGGTATTATTAGGTGAGGATTTGTAGCGATATCCTCCCTGCCCTCCTCGATCTGCTCAGTTTCTTGTAAATTA
TTACTGCTCCACTG--------ATGAAATGGAACGGAATGAAATAATACAGTACGATACTTAATTCAGTGCGTTTCCCAT
GGTCTCATGTC--TGTGAACATCTCCTCAAACTTCCCAAGAAGAGAAGTGGCAACTGAAACACGTCCCAAGCAAGAGTAT
G-AAATGAGTACTAGGGCTTGTCATTAGTTCGTTACTACTCGCTCTGTTCTAAAGTAAGTGTCGTAGTTTCAGTTAGACG
GTGCTCGTGGGATTCTTCAATTTCAAGATGTTCTTGTGCTGGAGAGTCCGTTGTGCTGGTGGTG-----CAGATTGGTTG
GAGCTGGCAAGT----TAGGTAGAGCTGTTTTGCGCGGGCTGTTGCTTTCGTACGTCTTGCC-----CTCTTCTGTTCTG
TTTTGGGTA-GGGCGGCAGCGAGTTGAGATGCCGCCCGCTGCAAAGGAAAGCAGCGGCCATCCCCCGTTTGGTTGTTGTT
GGATTGGATCGGATTGTATTGGGGTTGGAGGCGCCGCTTTGTGTT----------GTGTTGGTGCATTCCTGTCCTTGCT
AGATTCTATCGCCGCTTTTGGGTTGCTTCGGAGTCTGGACCGGTCTGAAAAGACTAACCAAAAGGCTGAATTTCCTCTT-
-CTTTTTTTTTACCAACGAAAATGGACCTATTTTTTCTAG--ATATATAAACAGGGAGAAATGGGCCGATTCCTTAGCAT
A--------T----------------------------------------------------------------------
--------------------------------ATTTTGATTAAAATATCATCTCCTCCTCCATCAGGGGCGCCACAAATG
GACTCTGAAATTCCCGCTCTCAGAAAAGTCAGTCGTCAGTGGACGAGGATTATCGGCCGTGGAAGGT
>chr7B_2
-TTTCCATCTATTTTTTAACCAATTTTCGTTGGATCAAGGTGCCGATCGGCGGTCATAGGTGTGCA-------------C
CCCTATGAATTTTCGCCCGACATATGAGGAGTTAAGGTACATGAGGCAGTTTGAAAGGTTAAATTATATCGAGTTAAGGT
ATATGA-GGCACTTTGAGAGGCCAAATTATAATAGATTGGCTAGAGATGGCCTAAGAAGGCCAATCTTCGTTGAAGGACA
CTTAAGTTCAATGGTAAGATTCAAATGAGGAAGAAGAAACTATATAATCCAAGTTTAAAAAAATCTACCCTACA-----T
TACATTGTGATAGGAAGGGAGTAGGAACCATGTTCTAGCAAACTAGAGAAAGGAAGAAATATCATTTGAGTTCCTC----
----CCTATCTGGA---TATTT--GGACACGGTGGCGGCGGGAAAATGGAGGGCGAGGGGCACCCAAATTGGGTTTGTGG
ATGCAGG---CAAGGCAAAGTAGGCAGGCCATACCCATCACCGCCCGGCCGCCACATGTGTCAGCACCGCACACGCCGAC
GCC------ACCGTTCACCGTTACGCACTCTCCAGCAGCCTACCTCCCCTATAGAGTATCGTA---TAGCATAGTATAGA
TAGATAGAGTAACA--GGTGCTTTCGCTTTGTACCTACCTCCTCTGCCGCCTTGC-----ATGCTCGCTCGCGCTCGGGC
CGGCGTGGCAGCCGGTCGCGCACGGCCAGAAAAATCCACGAGGCCCGGTCCGGTCGTGTCATGCCGTCACCCTAACCACC
TCGACTCCCCTTCCAACAAACCAACCAACTCATCATCATC---ATCATCCTCTCTTTCTCTC--CCG----CTCGCGCGC
CTACCTTCCCTTCCTCCCAAGAGAGCAAGC-----AGAGGAGCCGCCTATATAAATCCGCCCGCCCTTTCCTCCCCCCAA
TCTAGCCCGCACACGCTACGCCACGCCACACCAACACGTGAGCTAAGAAGCAAAAGCAAGGCGGATATACGTTTACACCA
CCATCAAAGAGCTTAGCGGCCATGGGTCGGTCGCCGTGCTGCGAGAAGGCGCACACCAACAAGGGCGCGTGGACGAGGGA
GGAGGACGAGAGGCTGGTGGCCCACGTCCGGGCGCACGGGGAGGGCTGCTGGCGCTCGCTGCCCAGCGCCGCCGGCCTGC
TGCGCTGCGGCAAGAGCTGCCGCCTCAGGTGGATCAACTACCTCCGCCCCGATCTCAAGCGCGGCAACTTCAGCCGCGAC
GAGGACGAGCTCATCGTCAAGCTCCACAGCCTCCTCGGCAACAAGTGGTCGCTCATCGCCGCGCGCCTCCCCGGGAGGAC
CGACAACGAGATCAAGAACTACTGGAACACGCACATCCGGAGGAAGCTGCTGGGCAGGGGGATCGACCCCGTCACGCACC
GCCCCCTCACCGA---------CGCCACCACCGTCTCCTTCGTCCATCCTGCAGAGGCGCCAAAGACG---CAGCCGGTG
ACGGAGGAGAGGAAGCCGCCCAGGTGCCCGGACCTCAACCTGGACCTCTGCATCAGCTTGCCGTTCCAACAGGAGGAGGA
ACGGCCGCCGGCGAGAGCATGCGCCAAGCCGGTGAAGATGGAGCAGCTGCAGCAGGGCC------GCCTCTGCTTCCGCT
GCAGCATCCTGAGAGTGAGAGGAGCGGCGACGGAGTGCAGCTGCGGCAGCAACTTCCTGGGCCTCAGGGCCGGCATGCTC
GACTTCAGAGGCCTCGAGATGAAATAGA---AATTTGGGAATAATTATTCGATCAAACTTT----CTGCTGTAAATTGTT
GCTCCCTC---CTACCACGTTTTTATTTACTTCTTAGGAAAAGAAATACT---ACAGTACTGGTAGATGGCGAGGAGGAG
ACTA-----GTATTATTAGGTGAGGATTTGTAGCCAGATCCTCCCTGCCCTCCCCGATTTGCTCAGTTTCATGTAAATTA
TTACTGCTCCACTG--------ATGAAATGGAACGGAATGAAATAATACACTA-GATACTAAATTCAGTGCGTTTCCCAT
GGTCTCATGTC--TGTGTGAACAT-CTCAAACTTCCCGAGAAGAGAAGTGGCAACTGAAACACGTCCCAAGCAAGTGTAT
G-AAATGAGTACTAGGTCTTGTCATTAGTTTGTTACTACTCGCTCCGTTCTAAAATAAGTGTCGTAGTTTCAGTTAGACC
GTGCTGGTGGGATTCTTCAATTTCAAGATGTTCTTGTGCTGGAGAGTCCGTTGTGCTGGTGGTGCAGAACAGATTGGTTG
GAGCGGGCAAGT----TAGGTAGAGCTGTTTTGCGCGGGCTGTTGCTTTCGTACGTCTTGCC-----CTCTTCTCTTCTG
TTTTGGGTAGGGGCGGCAGCAAGTTGAGATGCCGCCCGCTGCAAAGGGAATCAGCGGCCATCCCCCGTTTGGTTGTTGTT
GGATTGGATCGGATTGGATTGGGGTTGGAGGCGCCGCTTTGTGTT----------GTGTTGGTGCACTCCTGTCTTCGCT
AGATTCTATCGCCGCTTTTGGGTTGCTTTGGAGTCCGGACCAGTCTGAAAAGACTAACCAAAAGGCTGAATTTCCTTTT-
-TTTTTCTTTTACCAACAAAAATGGACCTGTTTTT-CTAG--ATACATAAACTGGGAGAAATCGGCCGATTTCTTAGCAT
GTATTCCCTCCGTCTGAAAAAACTTATCCCAAACTTGTTTTTCAAATTGATGTATCTGACATTGATACTAAATAAATCTA
TTTGAAGCAAACTTTTTCGAACGAATAAGAGCATTTTGATTAAAATATTATTCCCACCTCCGTACGGGGCGCCACAAATG
GACTCTGAAATTCCCGCTCTCCGAAAAGTCAGTCATCAATGGACGAGGATTATCGGCCGTGGAAG--
>chr7A_403
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-----CTATCTGGATATTATTTGAGGACACGGTGGCGGGAGAATC---GAGGGCGGGGGGCACGCAAATTGGGTTTGTGG
ATGCAGGCAACAAGGCAAAGTAGGCAGCCCATACCCATCACCGCCCGGCCGCCACATGTGTCAGCACCGCACACGCCGAC
GCCGACGCCACCGTTCACCGTTACGCACTCTCCAGCAGCCTACCTTCCCCTTTAGTATACTAGTAGTAGTATAGTATAGA
TAGATAGAGTAACAGGGGTGCTTTCGCTTTGTACCTACCTCCTCTGCCGCCTTGCGTTGCATGCTCGCTCGCGCTCGGGC
CGGCGTGGCA------------CGGCGAGAAAAATCCACTCGGCCCGGTCCGGTCGTGTCATGCCGTCACCCTAACCACC
TCGACTCCCCTTCCACCAAACCAACCAACTCATCATCATC--CATCATCCTCTCTCCCTCTCTTTCTCTCCCGCGCGCGC
CTACCTTCCCTTCC---CAAGAGAGCAAGCAGATGAGAGGGGCCGTCTATATAAGTCCGCCCGCCCTTTCCTCCCCCCAA
TCTAGCCCGCACACG-----CCACGCCACACCCACACGTGAGCTAAG---CAAAAGCAAGACCACCATC-----------
---------AAAGAT-CGGCCATGGGTCGGTCGCCGTGCTGCGAGAAGGCGCACACCAACAAGGGCGCGTGGACGAGGGA
GGAGGACGAGCGGCTGGTGGCCCACGTCCGGGCGCACGGGGAGGGCTGCTGGCGCTCGCTGCCCGGCGCCGCCGGCCTGC
TGCGCTGCGGCAAGAGCTGCCGCCTCAGGTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCCGCGAC
GAGGACGACCTCATCGTCAAGCTCCACAGCCTGCTCGGCAACAAGTGGTCGCTCATCGCCGCGCGCCTCCCCGGGAGGAC
GGACAACGAGATCAAGAACTACTGGAACACGCACATCCGGAGGAAGCTGCTGGGCAGGGGGATCGACCCCGTCACGCACC
GCCCCCTCACCCACGCCGCCAGCGCCACCACCGTCTCCTTCCTCCATCCTGCGGAGCCGCCCAA---GACGCAGCCGGCG
ACGGAGTTGAGTAAGCCGCCCAGGTGCCCGGACCTCAACCTGGACCTCTGCATCAGCCTGCCCTTCCAACAGGAGGAGGA
ACGGCCGCCGGCGAGAGCGTGCGCCAAGCCGGTGAAGATGGAGCAGCTGCAGCAGGGCGGCGGCGGCCTCTGCTTCCGCT
GCAGCATCCTGAGAGTGAGAGGGGCGGCGACGGAGTGCAGCTGCGGCAGCAACTTCCTGGGCCTCAGGGCCGGCATGCTC
GACTTCAGAGGCCTCCGGATGAAATAGATGAAACTTAGGAATAATTATTCCATCAAACTTTCTGCCTGCTGTAAATTGTT
GCTCCCTTCTACTACCAAGTTTTTATTTAGCTTTTAGGAAAAGAAATACT---ACTACTACAGTAGATGGTGAGGAGGAG
ACTA-----GTATTATTAGGTGAGGATTTGTAGCCAGATCCTCCCTGCCCTCCTCGGTCTGCTCAGTTTCATGTAAATTA
TTACTACTGCTCCACCGATGAAATGGAATGGAACGGAATGAAATAA-----TA-GATACTAAATTCAGTGCGTTTCCCAT
GGTCTCATGTCCCTGTGAACATCTCCTCAAACTTCCCTAGAAGAGAAGTGGCAAATGAAACACGTCCCAAACAAGAATAT
GAAAATGAGTACTAGACCTTGTCGTTAGTTCTCAC------------TTCTAAAATAGAGCAGTTTTAACATGG------
---------------TTCCAGTTCAAGATGTTCTTGTGTTAGAGAGTCCGTTGTGCTGGTGGTG-----CAGATTGGTTG
GAGCCACCAAGTTTGGTAGGTAGAGCTGTTTTGCGCGGGCTGTTGCTTTCGTACGTCTTGCCCTGTTCTCTTCTGTTCTG
TTTTGGGTA-GGGCGGCAGCAAGTTGAGATGCCGCCCGCTGCAAAGGAAAGCAGCGGCCATCCCTCGTTTGGTCGTTGTT
GGATCGGATCGGATTGGATTGGGGTTGGGGGCGCCGCTTTGTGTTGTGTTGTGTTGTGTTGGTGCACTCCTGTCCTTGCT
AGATTCT---------TTTGGGTTGCTTCGGAGCCCGGACCAGTCTGAAAAGACTAACAAAAAGGCTGAATTTCCCCTTT
TTTTTTCTTTTTACAACGAAAATGGAACCTGTTTTCCTAGATATATATAAACAGGGAGAAATGGACCGATTTCTTAGCAT
ATACTACTGT----------------------------------------------------------------------
--------------------------------ATTTTGATTAAAATATTATCTCCTCC---ATCTGGGGCGCCACAAATG
GACTCCGAAATCCCTGCTCTCGGAAAAGTCAGTCGTCAGTGGACGAGGATTATCGGCCGTGGAAGGT
>SNPs
S-------------------------S----------SSSSSS--SSSSSS--SSSSSSSS-SSSSSSSSSSSSSSSSS-
----SS--------S--------S-------S-------S-S------------S-------------------------
----SSS--------S----SSS---------SS---SS-------S--SS----------------SS-----------
--S----------S------S------------------------------------S---------------SSSSSS-
------------S---------------------S-----------------------------------------SSSS
SSSS------------------S-----------------S--S----S-------------------------------
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---S----------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
S----------S--------------------------------------------------------------------
----------------------------------------SS---------------------S----------------
---------------------------------S----------------------------------------S-----
----------------S--------------------------S-----------------------S-----S------
--------------------------SS-S--------------------------------------------------
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--------------------------S-----------------------------------------S-----------
---------------------------------------------------------------------S----------
--------------------------S--------------------------------S-------------S-S----
-----------------------S--------------------------------------------------------
-------------------------------------------------------------S------------------
----------S---------------------------------------------------------------------
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--------------------------------------------------SSS---------------------------
---SSSSSS-------------------------S-S---------------------------------S---------
--------------------------------------------------S--S------S-------------------
-------------------------------------S------------------------------------------
----------------S----------------------------S--------S------------------------S
-----S--------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
----------------S-------------------------------------------------S-------------
-----------------------------------S-----S--------------------------------------
-S----S----------------------S-----S-----------------------------------S--------
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------------------------------------------------S---------------S---------------
---------------------S---------------------------------------------
>forward_112
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------------TCACCCGACATTTGAGGAGC------------------------------------------------
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>reverse_1955
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----------------------------------GATATCCTCCCTGCCCTCCT--------------------------
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