>input_sequence_71245
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--------------------------------------------------------------------------ATGGCT
CCCAAGAAGGTGAACATGGAGTACATCTCCAACGGCTCAACCCGGAAGGCGACGTTCAAGAAACGCAGCATCGGGATGAA
GAAGAAGGCCCGCGAGTTGTCCACCCTGTGCGGCGTCGACGTGTGCTACGTAATGTACTACCCCGAGGGCGAGTCATCGC
AGGGGCCCGAGGTCTATCCGACTGTCCCGGAGGCGATGCGCGTTATAGACCGCTTCAGGTCCACGCCGGAGCTTGACCGG
TGCAAGAAGAAGATTGGGGGAGAAGACTATATCCGGGAGCGCATCAGCAAGCTCCAGGAGCAGCTTTGCAAGGGGCGAAG
CGACACCCACCGGCTCGAGACAAAGGTGCTGCTGCACGACGTCCTGGCCGGTCACCGCCAGAGCCTCGCCGGCCTCAACA
TCGAGCAGCTCGCCAGCTTGGGCTGGATGGCGGATAACTATATGAAAAAGGTCGGTGACTGCATCGCCTCAAACAAGAGT
AGGCAGCATGCTGGTCCCCTGCCTTGCGATG---CCACTGCTGCCAACGTCAATGCCGAGGGCCCACTGCTGCAAGGTTG
GGCTACGGAGGTTGTCAAGGCCGGACCTGATGTCGACGACGCAGCATACGGTGGCAACGCCGATGGTGATGTGACGCGGA
TCAGCAACTTGGCCGTGGGATTTGCATGGGCTGATCCAGGTCCGCATTTTCCTCGCATATAA------------------
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>chr7B_1_TraesCS7B01G485400
GTATACTTTTTCATGGACCCCAATTTATCTTTTTTGCTAAGAGCTCCTCATGTGTCCAAATGATATGAAAATTGGTGCAG
ACCTCCCGCATCAAATTGTCTACCAGACAAAATATATTGGAAATTTTCTATTTTTTTCTCGTATTTGTTTTGATTCTTTT
GTCAGCGCGGGTGGAGAGAGCTCAGGTGCAGAGATAGATTTTCGATGAAACGAGTAGGGCGTTCCATTGTCTAGGGTCAT
TTGCACCCATTTATAAAAAGAATATAAAAAATAAAAAAAATCACTTTTTTTGTGCGGTAGAAAATTTGATGCGTGAGGCC
CGCTCCAAATTTGAAGTCATTTGGACATATGAGCAACTCTCATCAAAAAAGACAAATCGGGCCAAAATAGTACATGAATA
TCAAAAAATTCCCAATTTCATCTCAAAAATAAAATAGTAC-----ATAGTGTAGTAGTACATTCTCTTGTTTTTA-CACT
CATGTAGTAGCACATTCTTTGTGTAGGCGCGTTCTTTGGTTCGTCTCCCCAATTCTAGCGTCTAGATTTGACCATGCGA-
-TGATAATTAATTTTGGTCAACTGATTCTTCAAATGCCTGATGGATCAGTATCAACTTGAGATCGAGAGATCGAATCACA
AATGGACACTCGACCACGTACACCA----GCGGTCTTGAATTCTGCCAGTCAGCCAT------------------ATCCC
AACCGTGTAAACAGACACTCCGGAATGTGAATTCAGATCACACGGATCAGATTGGTATAATA-AAAATTAAGGCTAGAAT
ATATGCTTCCCCTAACTATATGCATTAAACAACATTAATGCAGGCGACCCTCGTATCTGTTAGAATAATTTTCTTTCCAA
TTATCACGTGGATGATCGTACTCTTGTCATTCGATTTGATACTCCCCTATAAGACC---ACCATCCCCTCATCTGGCAAG
CACACCAACCATTTCACTTCGATTCCTGCCTACATTCTTTCGTTCTTTTTTGTAGCGGTCGTCCGTGTGTGTCCATGGCT
CCCAAGAAGGTGAACATGGAGTACATCTCCAACGGCTCAACCCGGAAGGCGACGTTCAAGAAACGCAGCATCGGGATGAA
GAAGAAGGCCCGCGAGTTGTCCACCCTGTGCGGCGTCGACGTGTGCTACGTAATGTACTACCCCGAGGGCGAGTCATCGC
AGGGGCCCGAGGTCTATCCGACTGTCCCGGAGGCGATGCGCGTTATAGACCGCTTCAGGTCCACGCCGGAGCTTGACCGG
TGCAAGAAGAAGATTGGGGGAGAAGACTATATCCGGGAGCGCATCAGCAAGCTCCAGGAGCAGCTTTGCAAGGGGCGAAG
CGACACCCACCGGCTCGAGACAAAGGTGCTGCTGCACGACGTCCTGGCCGGTCACCGCCAGAGCCTCGCCGGCCTCAACA
TCGAGCAGCTCGCCAGCTTGGGCTGGATGGCGGATAACTATATGAAAAAGGTCGGTGACTGCATCGCCTCAAACAAGAGT
AGGCAGCATGCTGGTCCCCTGCCTTGCGATG---CCACTGCTGCCAACGTCAATGCCGAGGGCCCACTGCTGCAAGGTTG
GGCTACGGAGGTTGTCAAGGCCGGACCTGATGTCGACGACGCAGCATACGGTGGCAACGCCGATGGTGATGTGACGCGGA
TCAGCAACTTGGCCGTGGGATTTGCATGGGCTGATCCAGGTCCGCATTTTCCTCGCATATAAGGAGACCGTGTGCAATAG
TGTTGGCATCAAAATAAAGGCCTCGTGTCGATGCATATACTATGTACGTGGGCTCAAGTAT-----TTTTTTTTTTAGAA
AAATCTTCATTCAAATCACGAATCAGTACAAAGTAGGTGACCCTTACAAGCACACTGAAACGCAAACACAAAGGACCATG
AACACATAGAGTACCCTAAGACAACCATAACACAAGAAGATCTCCGGAGCCCTGTGTCATCATCCCTGAATCTTGAGAGA
AGACCCCTGCAGCAGAAAGATCTGCAACCATTCGCAAACAGGTCATCATCTTCGACCATGGTACAATTGCCGCCACGCTG
CTTCCTCCTTTCTTAACACCAGCGCTGAGAGGGCATGGACATCAATCCAACACACCTGCAACAGCCGTCGCCATCTTTGG
CTTTGAGTACCGCAAAAAATAAAGATCCGTTGATTCCTGAAATTTATACGTTGCAAA---AAAATGCAAATATGTATTAT
ATATTGGAAGGATAGAAGCAAGAAGAAATCGACCAAGTGGCAATGAAGATATTGTTATTGACTATAGCAATTTACAACTG
AAGATATTTTGCCAGAATTTGCAGGCCACTTCTTGGACATAGATACTACTGTCCAATGGAGTTGGATGAGTTGCACAA--
---------------------------------AGCTAATGGAAGGTATAGCTTTGATCACTACCCAGAGCACCAGGCAT
ATCCTGCTGCGGCTTCTCGCGAGCCTTAAGGATCAATAAATTAGACTCATATTGGAGCAGGTTGGAACCGATTATTATGG
AGGATGCAACATGTGTGTCACACGCAAACTGGCTGCGGATTTTATAAATCGACACTAGAAGTATCGATTATTATGTTAAA
TTATGTCTTTACAGTTCCTCCGCTACAAAATTTTGAAGTTGTATCTTCTTTGTACATCAAACTTTTTTTTTTTTGGTGGT
AAATCAAACCTTTTATATTTGACCAAATTATTAGAGAAATGTATCAATGGCTGCAACACTAGATA
>chr7D_406
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-----AAACTCCCTATTTCATCTCAAAAATTAAATAGTACTGTACATAGTGTAGTATTACTTTT-----TTTTTA-CAAT
CATTTCGTTGGACATCCATTGTGTAGGCGCGTTCGTAAATTCACCTCCTCAATTGTAGCGTTTAGATTTGAGCATGCGTG
CTGATAATTTATTTTGTTCTACTGATTCTTC-AATGCCTGATGGATCAGTATCAACTTGAGATCAAGAGGTCAAATCACA
AATTGACAATCGACCACGTACACCATCGCGCGGTCTCGAATTCTGCCAGTTACCACGTATAGATGATGTGGGGAAATATG
AACTGTGTAAACAGACACTCCGGAATCTTCATTCAGATCACACGGATCAGATTGATATAAAG--AAATCAAGGCTAGAAT
ATACTATGCGG-TAACTG--TGCATTAAAAAACATTAATGCAGGCGATCCTCGTATCTTCCATAATGA-TTTCTTTCCAA
TTATGACGTGGATGATTATACGCTTGTCATTCGATTTGATACTCCCTTATAAGACC---ACCATCCGCTCATCTGGCAAA
CACACCAACAATTTCACTTCGATTCCTACCTACATG-------------------------------------CATGGCT
CCCAAGAAGGTGAACATGGAGTACATCGCCAACGGCTCAGCCCGGAAGGCGACGTTCAAGAAACGCGGCATCGGGATGAA
GAAGAAGGCCCGTGAGTTGTCCACCCTGTGTGGCGTCGACGTGTGCTACGTAATGTACTACCCCGAGGGCGAGTCCTCGC
AGGTGCCGGAGGTGTATCCGTCTGTCCCGGAGGCGATGCGCGTTATCGACCGTTTCAGGTCCACGCCGGAGCTCGACCGG
TGCAAGAAGAAGATTGGGGGAGAGGACTACATCCGGGAGCGCATTAGCAAGCTCCAGGAGCAGCTTTCCAAGGCGCGACG
GGACACCCACCTGCTCGAGACAAAGGTGCTGCTGCACGACGTCCTGGCCGGTCACCGCCAGAGCCTCGCCGGCCTCAACA
TCGAGCAGCTCGCCAGCTTGGGCTGGATGGCGGATAACTATATCAAAAAGGTCGGTGACTGCATCGCCTCAAACAAGAGT
AGGAAGCATGCTGGTCCCCTGCCTTGCGATGATGCCACAGCTGCCAACGTCAATGCCGAGGGCCCACCGCTGCAAGGTTG
GGCTACAGAGGTTGTCAAGGCCGGACCTGACGTCGACGGCGCAGCATACGGTGGCAACGCCGATGGTGATGTGACGCAGA
TCAGCAACTTGGCCGTGGGATTTGCATGGGCTGATCCAGGTCCGCATTTTCCTCGTGTATAAGGAGACCGTGTGCAACAG
TGTTGGCATCAAAATAAAGGCCTCGTGTCGATGGATATACTATGTACGTAGGCTCAAGTAT-----TTTTTTTGAGAAAT
T-------------------------------------------------------------------------------
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-----------------AATAAAGATCCGTTGATTCCTGAAATTTATACATTGCAAAAAAAAAATGCAAATATATGTTAT
ATATGGGAAGGATCGAAACAAGAAGAAATCGACCAAGTGGCAATGAAGATATTGTTATTGACTATAGCAATTTACAACTG
AAGATATTTTGCCAGAATTTGCAGGCCACTTCTTGGACATAG-----------------------------------A--
---------------------------------AGCTAATGGAAGGTATAGCTTTGATCACTACCCAGAGCAACAGGCAT
ATCCTGCTGCGGCTTCTCGCGAGCCTTAAGGATCAATAAATTAGACTCATATTGCAGCAGGTTGGAACCGATTATTATGG
AGGATGCAACATGTGTGTCGCACGCAAACTGGCTGCGGATTCTATAAATCAACACTAGAAGTACCGATTATTATGTTAAA
TTACGTCTTTACAGTTCCTCCGCTACAAAATTTTGAAGTCATATCTTCTTTGTACATCAAACTT----TTTTTGGGTGGT
AAATCAAAACTTTTATACTCGACAAAATTATTAGAGAAATGTATCAATGGCTGCAACACTAGATA
>chr7A_407
AATTACCTA-----------------------------------------------------------------------
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----------------TTCATCTAAAAAATGAAACTGTAC-----ATTGTTTAGTAGTATATTT-----TTTTTGGCAAT
CGTGGAGTAGCACATTCTTTGTGCACGCGGGTTCCTAGATTCGTCTCCTCAATTCCAGCGTTTAGATTTGAGCATGCGTG
CTGA-AAATTAATTTAGTCTACTGATTCTTCAAATGCCTGATGGATCAGTATCAACTTGAGATCAACAGGTCGTATCACA
AATTGACAATCGACCACGTACCACGTG--------------------------------TAGATGAAGAGGGGAAATACG
AACAGTGTAAACAGACACTCCAGAATCTTCATTCAGATCACACGGATCAGATTGATATAAACGAAAATTAAGGCTAGAAT
ATATGCTTCCGCTAACTG--TGCATTATACAACATTAATGCAGGCGATCGTCGTATCTGCCAGAATAA-TTACTTTCCAA
TTATCACGTGAATGATTGTACTCTTGTCATTCGATTTGATACTCCCCTATAAGACCACCACCATCCCCTCATCTGGCAAA
CACACCAACAATTTCACTTGGATTCCTACCTACATG-------------------------------------CATGGCT
CCCAAGAAGGTGAACATGGAGTACATCGCCCACGGCTCACCCCGGAAGGCGACGTTCAAGAAACGCGGCATCGGGATGAA
GAAGAAGGCCCGCGAGTTGTCCACCCTGTGCGGCGTCGACGTGTGCTACGTAATGTACTACCCCGAGGGCGAGTCATCGC
AGGTGCCCGAGGTGTATCCGTCTGTCCCGGAGGCGATGCGCGTTATAGACCGCTTCAGGTCCACGCCGGAGCTCGACCGG
TGCAAGAAGAAGATTGGCGGAGAGGACTACATCCGGGAGCGCATCAGCAAGCTCCAGGAGCAGCTTTCCAAGGCGCGATG
CGACAGCCACCGGCTCGAGACAAAGGTGCTGCTGCACGACGTCTTGGTCGGTCACCGCCAGAGCCTCGCCGGCCTCAACA
TCGAGCAGCTCGCCAGCTTGGGCTGGATGGCGGATAACTATATGAAGAAGGTCAGTGACTGCATCGCCTCAAACAAGAGT
AGGCGGCATGCTGATCCGCTGCATTGCGCTG---CCATCGGCGCCGACGTCAATGCCGAGGGCCCACCACTGCAAGGTTG
GGCTACGGAGGTTGTCAAGCCCGGACCTGACGTCGACAGCGCAGCATACGGTGGCAACGCCGATGGTGATGTGACGCAGA
TCAGCAACTTGGCCGTGGGATTTGCATGGGCTGATCGAGGTCCGCATTTTCCTCGCGTATAAGGAGACCGTGTGCAATAG
TGTTGGCATCAAAATAAAGGCCTCGTGTCGATGGATATACTATGTACGTAGGCTCAAGTAGGAGTATTTTTTTGAGAAAT
T-------------------------------------------------------------------------------
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-----------------AATAAAGATCCGTTGATTCCTGAAATTTATACATTGCAAAAG--AAATGCAAATATATATTAT
ATATTGGAAGGGTTGAAACAAGAAGAAATCGACCAAGTGGCAATGAAGATATTGTTATTGACTATAGCAATTTACAACTG
AAGATATTTTGCAAGAATTTGCAGGCCACTTCTTGGACATAG-----------------------------------ATA
CTACTGTCCAATGGAGTTGGATGAGTTGCACAAAGCTAATGGAAGGTATAGCTTTGATCACTACCCAGAGCAACAGGCAT
ATCCTCCTGCAGATTCTCGCGAGCCTTAAGGATCAATAAATTAGACTCATATTGGAGCAGGTTGGAACCGATTATTATGG
AGGATGCAACATGTGTGTCGCACGCAAACATGTGTGTCGCACGCATATTGGAGCCTAGAAGTATCGATTATTATGTTAAA
TTATGTCTTTACAGTTCCTCTGCTACAAAATTTTGAAGTTATATCTTCTTTGTACATCAAACTT----TCTTTTGGTGGT
AAATCAAACCTTTTATATTTGACCAAATTATTAGAGAAATGTATCAATGGCTGCAACACTAGATA
>SNPs
SSS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---S----S----------------S--------------------------------SSSSSS---------S-
----------------------------------S-S-S---------S------------S---------S------S-
---------S---------S--------------------------------------------S----S----------
---S----S---------------------------S-------------S-S-SSS--------------------S-S
---S----------------------S-SS------------------------S-----SS------------------
----------S------SSS---------------------------S-----------SS-------S-----------
----------------S--------------------------------------------------------------S
---------S-----------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---------------------------S-----------S--------------------------S-------------
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---S---------S------S----------------------------------------------------S------
-----------------------S-----S-------------------------------------S-----S----S-
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--------------------------------------S----------------------------S------------
------------------------------S-------S--------------------------------------S--
--------------------------------------------------------S-----------------------
---------------------------------S---------------S-----------------------SSS-S-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS--------------------------------S-----------------------S------
-------------S---S--------------------------------------------------------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------------------------------------------------------------------------S-------
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-------------------S---------------------S--------------------------------------
----------------------------------------S-----------------------SSSS------------
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>forward_515
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---------------TCTTTGTGTAGGCGCGTTCT---------------------------------------------
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>reverse_1954
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---------------------------------AAGAAGATCTCCGGAGCCCT---------------------------
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