>input_sequence_71211
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-------------------------------------------ATGGTCATCGGGAAGCTGGGCCTGAGCTCCCTCTTCC
ACACGAAGCCCAAGGAGGAGGCCTCGCCGTCACCTCCTCGAGGCGACCCGGCCGCGGCGCCGGCGTGGGCATGGCCGTCC
TGCAAGCACCCAAGAACGCGGTCCTTCCACGACGCGCCGCCACCGCCCGGCGCGAGAACGCTCGCCTCCATCTTCCTCGA
CTCCGCCGAGAGCTCCTTCACCAACTCCTCCGCGCGGCGCGACTGCTCCGACAGCCCCTCCACGGCGTCCGAGGCGTCGG
CGGAGGGCGGGGGCGACGCCGTCACG---GCCGCCGAGGACGCCGCCGTCGTGGGGCCGCTCCGCTCCTCCGACCGGCTC
CTGTTCGACCCGGGGGCGTCGGGGACCACCAGCTCCATACTGGAGGAGAAGGTGCCGGCGG---------AGGCGTTCGT
GGGCGGCCTGGCCGTGGCGTTCGAGTCGGCGGACCCATACGGGGACTTCCGGGCGTCGATGCAGGAGATGGTGGCCGCGC
ACGGGGCCGGCGGCTGGGGCTGTGGCTGGGGCTGGCTGGAGGAGATGCTGGGCTGGTACCTGCGCGCCAACGGCAAGGAC
ACGCACGGCGCCATCGTGGCCGCCTTCGTCGACGTCGTCGTCTCCGTCGCCGACCCCGGCCGCGGCTCCTCCTGCTCGTC
CCGGAGCTCCTCCTGCGCGTCCGTCGACGGGGATCAGTAA----------------------------------------
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>chr3A_1_TraesCS3A01G375900
TTGAAATGTTTCTGTAAGGAAAGAGGTTTGCGTGATAAAAGGTTAAAACCCTGCAAAAACGGTAATGTAGTTCTATGGTG
GCTTAGTGTTGGTCCAAGATCCCCGCTTTGAAAGAAACAAGTCACGATATTGTTTAAAAATATGACGGGACGTTTTTTCT
ATTTGAAACTGAGCTAATATTTTCAAGGAAAGTGATTTTCTCGATGATTTTCATGGCAAACCATACAAGTCCTTACAAAC
AATGAAAATCGAACTAATGATGTGCTAGTGTTTTTCCATTTGAAATGGAAATGTGTATGTGTTCCAGTATTTTGTTTTAG
GTGAAAAATACAGTGAAGCTCGAAAATTCTAATAGTGACCCGCTAGTGTTAGCGATTTGAAAAGAAATGAGCTAATTAGT
GTTGAGTGTAGCTCTCTTAATATATAGATGGATGGGGTTTGTGATCTCCTTGCATGATTTTACGTATGTTAGCCACATGC
ATCATGCAAAATGATAATTTTACACTTACAATAGTGCACTACAAGAGAGACCTTGCGCCGAGTACTGCAAATACTCGACC
AAGGCTGAAAAGAAATCGGCAAAATCTTCTCAAGTACTCCCTCTACAGTGATCTAAACGGTCTTATATTTCTTTACAGAG
GTAATACTACACTCGGCAAAACCGTACTCAACATACACCCTTTCGGTAAAGCGAGCTGGTACCCGCTCCCATATATTCTG
AAAGTTTGCATTTGTTGCATACGATATATGGAAACCAACAAAAAAATACTGTATATTAATTCTCCAAAGTCTTGACATAA
CCACGTAGGTAGGTGTATGCCAGTATGTGTAGGCCCTCTCCCCTCCCAGAGCTCATTTAAAACCAAACTACCACGGACGG
CAGTCGGATATAATGGGTGCACCGGTTTTGAAAACACCATACGCACCAAAACCTTCCTTCATCCTCGCCAGTCGTCACTT
GTCCTCCTCCGGGTCAGCTCCACTCCT---GAGAGGCACAACAATGGTCATCGGGAAGCTGGGCCTGAGCTCCCTCTTCC
ACACGAAGCCCAAGGAGGAGGCCTCGCCGTCACCTCCTCGAGGCGACCCGGCCGCGGCGCCGGCGTGGGCATGGCCGTCC
TGCAAGCACCCAAGAACGCGGTCCTTCCACGACGCGCCGCCACCGCCCGGCGCGAGAACGCTCGCCTCCATCTTCCTCGA
CTCCGCCGAGAGCTCCTTCACCAACTCCTCCGCGCGGCGCGACTGCTCCGACAGCCCCTCCACGGCGTCCGAGGCGTCGG
CGGAGGGCGGGGGCGACGCCGTCACG---GCCGCCGAGGACGCCGCCGTCGTGGGGCCGCTCCGCTCCTCCGACCGGCTC
CTGTTCGACCCGGGGGCGTCGGGGACCACCAGCTCCATACTGGAGGAGAAGGTGCCGGCGG---------AGGCGTTCGT
GGGCGGCCTGGCCGTGGCGTTCGAGTCGGCGGACCCATACGGGGACTTCCGGGCGTCGATGCAGGAGATGGTGGCCGCGC
ACGGGGCCGGCGGCTGGGGCTGTGGCTGGGGCTGGCTGGAGGAGATGCTGGGCTGGTACCTGCGCGCCAACGGCAAGGAC
ACGCACGGCGCCATCGTGGCCGCCTTCGTCGACGTCGTCGTCTCCGTCGCCGACCCCGGCCGCGGCTCCTCCTGCTCGTC
CCGGAGCTCCTCCTGCGCGTCCGTCGACGGGGATCAGTAAACTAACCTTACTTACTTCCGTGGCATGGTTAATGTGGTGA
G-------------------------------------GGTGTGGTAGATGAGTGAGTAGATCACGTACGTCGGTACGTG
CCGAACACTTG-----------------GAGAACGTGCACGAGCATGAAAGTTAA----TTAATTTTAACTACTAGCTTC
TTCGTGGTAGCTGAAATCTCGTGCCAACATGTGATGGGTCGATGTTTGCATTGCACGTATGGCAATGGGTTCACGACGTC
GTCGTTCGAGATCGAGAGTACAGTAAAAGATCTTGTAGTTGTGCTCTACAGCATA-------------------------
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---------------------TACTTGGATTAGGTAGAACAAAAAGTTCATGCTCAAGACATAAATGTTGGTTGTTACAA
AACCACACCAAAATAGAAATATAA-AATTCGTCACTACAATTGAGACCAAACGTTAGATAAAAAA---------------
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------------GTGAAAGTGAACATGGTTCAGGAAAAGTGAAAGATAATGTTCACTATTTGGGACAAAGTAAACTAGAG
AAAAAGAGAAAGTTTGTCCTGAGAAGTTTATGCATATTTAAAATATAGAAAACGAAAACGAAATGGCATGGAAAATTGGA
TACAAAATCAATAGGTTAATTCTTCATGTAACAATACTGGAAAAAAAAG-AGGAACATACTAACATATCA-ATGAAAGAA
CAGAGGAAAAAACATAGATGGATGAATAAAAAGAAAGAGGGAAATAAAAAATCATATATTATTTTTCTTTTGAAAAAAGT
CAAGAATTTTTGTAGTAGATAAAAACAAGATGACCAATGTGATTCTTTTGGCAACTAATATGAAATACAACCGTTGGCTC
TTAAATGTCCATGGGAGGTATGTCTCACTTTTTTTAGACAAGCTATATCCCGCTTAAAGTGAAACGTAGCTCCGGCACGC
CCCTACGTTGAAGCTACTGGGCCAGCCCAGTGCTGTAGCTGCGGCTTGAGTTTTTTCTCTGTGCTTTCATTATTGGTTTT
TTTCACTGTTTGAAGCTCTTTCCTTCTGT-TATCTCTATTTTATGTTTTTATTTT
>chr3B_832
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-------------------------------GGCCTTCTCCCCTCCGAGCACTCATTTAAAACCAAACTACCACGGCCGG
CAGCCAGATATAACCGGAGCACCGGTTTTGAAAACACCATACACACCAAGACCTTCCTTCATCCTCGCCGGTCGTCACTT
---CTCCTTCGGGTCAGCTCCACTCCT---CAGAGGCACAGCAATGGTCATCGGGAAGCTGGGCTTGAGCTCCCTCTTCC
ACACGAAGGCCAAGGAGGAGGCCTCGCCGTCACCTCCTCGAGGCGACCCGGCCGCGGCGCCGGCGTGGGCATGGCCGTCC
TGCAAGCACCCAAGAACGCGGTCCTTCCACGACGCGCCGCCACCGCCCGGCGCAAGAACGCTCGCCTCGATCTTCCTCGA
CTCCGCCGAGAGCTCCTTCACCAACTCCTCCGCGCGGCGCGACTGCTCCGACAGCCCCTCCACGGCGTCCGAGGTGTCGG
CGGAGGGCGGGGGCGACGCCGTCACG---GCCG---AGGACGCCGTCGTCGTGGGGCCCCTCCGCTCCTCCGACCGGCTC
CTGTTCGACCCGGGGGCGTCGGGGGCCACCAGCTCCATACTGGAGGAGAAGGTGCCCGCGGCCGCCGGCGAGGCGTTCGT
CGGTGGCCTGGCCGTGGCGTTCGAGTCGGCGGACCCGTACGGGGACTTCCGGGCGTCGATGCAGGAGATGGTGGCCGCGC
ACGGGGCCGGCGGCTGGGGCTG------GGGCTGGCTGGAGGAGATGCTGGGGTGGTACCTGCGCGCCAACGGCAAGGAC
ACGCACGGCGCCATCGTGGCCGCCTTCGTCGACGTCATCGTCTCCGTCGCCGACCCCGGCCGCGGCTCCTGT---TCGTC
CCGGAGCTCCTTCTGCGCGTCCGTGGACGGAGATCAGTGAACTAAT----TTTACTTCCGTGGCATGGTTAATGTGGTGA
GAGTGAGCTTTGTCGAGCTAGCT----AATGATGGCGGAGTGTGGTAGATGAGTGAGTAGATCACGT----CGGTACGTG
CCGAACACTTGTTTGTATGAGCTCGACCGAGAACGTGCATGAGCATGAAAGTTACGTACTTAATTTTAACTAGCTTCT--
TTTGTGGTAGCTGAAATCTCGTGCCAACATGTGATGGATATATGT-----TTGCACGTATGGTAATGGGTTCAGGACGTC
GT------------------------------------------------------------------------------
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>chr3D_833
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--------------------------------GCCTTCTGCCCTCCCAGCGCTCATTTAAAACCAAACTACCACAGCCGG
CAGTCAGATATAACCGGAGCACCGGTTTTGAAAACACCATACGCACCAAAACCTTTCTTCATCCTTGTCACTT----CTC
---CTCCTCCGTGTCAGCTCCACTCCTGCTCAGAGGCACAACAATGGTCATCGGGAAGCTGGGCTTGAGCTCCCTCTTCC
ACACGAAGGCCAAGGAGGAGGCCACGCCGTCACCACCTCGAGGCGACCCGGCCGCGGCGCCGGCGTGGGCGTGGCCGTCC
TGCAAGCACCCGAGAACGCGGTCCTTCCACGACGCGCCACCACCGCCCGGCGCAAGGACGCTCGCCTCCATCTTCCTCGA
CTCCGCCGAGAGCTCCTTCACCAACTCCTCCACCCGGCGCGACTGCTCCGACAGCCCCTCCACGGCGTCCGAGGCGTCGG
CGGAGGGCGGGGCCGACGTCGTCACGGGCGCCG---AGGACGCCGTCGTCGTGGGGCCGCTCCGCTCCTCCGACCGGCTC
CTGTTCGACCCGGGGGCGTCGGGGGCCACGAGCTCCATACTGGAGGAGAAGCTGCCGGCGGGCGCCCGCGAGGCGTTCGT
GGGCGGCCTGGCCGTGGCGTTCGAGTCGGCGGACCCGTACGGGGACTTCCGGGCGTCGATGCAGGAGATGGTGGCCGCGC
ACGGGGCCGGCGGCTGGGGCTG------GGGCTGGCTGGAGGAGATGCTGGGGTGGTACCTGCGCGCCAACGGCAAGGAC
ACGCACGGCGCCATCGTGGCGGCCTTCGTCGACGTCATCGTCTCCGTCGCCGACCCCGGCCGCGGCTCCTCCTGCTCGTC
CCGGAGCTCCTCCTGCGCGTCCGTGGACGGGGATCAGTAAACTAAT----CTTACTTCCCTGGCATGGTTAATGTGGTGA
GAGTGAGCTTTGTCGGGCTAGCTAGCTAATGATGGCGGGGTGTGGTAGATGAGTGAGTAGATCACGT----CGGTACGTG
CCGAACACTTGTTTGTACGAGCTCGATCGAGAACGTGCGTGACCATGAAAGTTACGTACTTAATTTTAACTGC---CTTC
TTTGTGGTAGCTGAAATCTCGTGCCAACATGTGATGGATCGATGT-----TTGCACGTCTGGTGATGGTTTCACGACGTC
GT---------TCGAGAGTGCAGTAAAAGATCCTGTAGTTGTGCAAGTGAAGGACCACCTGAGTGTACTGCTCGCTAGGA
GTTAACCTGCAGTGATTACGATGAAAGCAAAATAGTATTGCTACCGTACAGCACGATGGCAGTTGGGGAGTACTGTACCA
AATTTGTGCGCTAGCGTATACGGTGAGTTTGTGATGTCAAAACTCAAACGTCCAACGCGGGAATGAGCACAGAATGTTTC
AAGAGAAAATAACAAATCAGCACGTTGCAAAAAAATAAATAACAAATCAGCACAGTTATGGACAGAAACACAACCGTCGA
CGATAATGATACAGTGTACTCCCTCCGTTCCAAAATAGATGACCCAACTTTGTACTAACCTTATACAAAGTTGAGTCATC
TATTTTGGAACGGAGGGAGTATATGTGAACTCATTTCCAATTCCACAGACGCATGAAGAGAAATTGACGCGTCAATCAAT
TTTCCCAAGACACGCTGCATCAAGCCAGAGGCGGGAGGCCATCACACCCCCGACGAGGGTGAGGCAAAATCGAACCAGAG
ATGAAGAAAGACACGACTGGTCGCACAGGCACCGGCGGAAGCTCGGTAGAGGGATGACGGATATGGGTGCATGATGGACG
GGGGTAGGGGTGGGATTATTGGATATCCTGACCGGTGGAAGATGGATGGAGGAGGCGGTTCGGGTAGAGCAAGGCAACGA
GGCCACGCATAGTGGCGCCATCAATCTCAGGTGGCGGGCAGTGGCAGCGCCATCTCGAAAGTGATGTGGGTTCAAGTACA
TTAAACTATCTTGTGTCTTGTAATTTTCTACACAAACATTAACAAATCTAAGTGGGTAATAAAAAAAAGGTTGTCGAGTT
AGCTGACCCCATAGCTTACACATAGAATCACCACTGGTAGCGATGACGTCAATTAGGCATGCGTCGGAGGGCAAGCCGAT
GTGGGTGGGAGGAGAAAGATAAAGGGGAGGAAGCAGAAGACGACGAGCACGCAAAATCGGCTGATAAAAAAATCAAGTGA
CTGATATATAGTCGCTGCCATATAATGACACAATTTACCATTACAAACTAACCATATTTATTAGGATTAGGTCGAACAGA
AGTTCCATGCTCTAAAACATGTACTTGGATTAGGTAGAACAAAAAGTTCATGCTCAAGACATAAATATTGCTTGTTGCAA
AACCACACCAAAATAGAAATATAACAATTCATCACTACAATTGAGACCAAATGTTAGATAAAATAGAGCTAATTTTTAGT
GCTCGTGGAACACATCACGACTTCTATGGATACAAACAATATGTAAAGTGAAACAAAATAATATTTCTTGTGCAACAAAT
CACATCAAATAGTGTCTAGTGAAACACATACTTTGGCAAATTGGAACAAAAATTATCTTTGTGGAGCAAATTGCAGCTAC
CTGTGGGATAATGTGAAAGTGAACATGGTACAGGAGAAGTGAAAGATAATATTTACTATTTGGGACAAAGTAAACTAGAG
AAAAAGAGAAAGTTTGTCATGAGAAGTTTATGTATATAAAAAATATAGAAAAGGAAAACGAAATGGCATGGAAAATTGGA
TACAAAATCAATAGGTTAATTCTTCATGTAACAATACTTGAAAAAAAAGGAGGAACATGCTAACATATCAAATGAAAGAA
CAGAGGAAAAAACATAGATGGATGAATAAAAGT-AAGAGAGAAATAAAAAATAATATATTTTTTTGGAAAAATCATTTAA
AA------TTTGTAGTAGATAAAAAAATATGATTAATGCGATT--TTTTGGCGACTAATATGAAATACAACCGTTGGCTC
TTAAATGTCCATGGGAGCTATGTCTCGCTTTTTT-AGACAATCTATATCTCGCTTACAGTGAAACGTAGCTCCGGCCCGC
CTCTACGGTAATGCTACTGGGCCAACCCAGTACTGTACCTGTAGCGTGAGTTTTATCCCTGTGCTTTCATTATTGG-TTT
TTTCACTGTTTGAAGCTCTTTCTTCTATTATATCTCTATTTTTTGTTCTTATT--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------------S--------------------------S---
-----S-------SS--S--------------------------------------------------------------
SSS---------------------------S---------------------------------S---------------
--------S-----------------------------------------------------------------------
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---------------------------------SSS---------S----------------------------------
------------------------S-------------------------------------------------------
------------------------------------S-------------------------------------------
----------------------SSSSSS------------------------S---------------------------
------------------------------------S-------------------------------------------
------------------------S--------------------SSSSS------------------------------
-------------------------------------------------------------------SSSS---------
---------------------------------------S--------------S------------------SSS----
--S----------------------------------S-------SSSSS------------S-----------------
--SSSSSSSSS--------S------------S-----------SSSSS-SSSSS-------------------------
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------------------------------------------------------------------S---S-----S---
------------------------------S--------------------S-----------S----------------
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-----------------------------S-----S--------------S--S--------------------------
------------------S-------------S----SS-------------S---------------------------
--------------------------------------S-------------------S---------------------
-------------------------------SSS-----S------------S-------S----SSSSSSSSS-SSSSS
S-SSSSSS-----------------S-SSSSSSSS-SSSSSS-SS-------S---------------------------
-----------------S--------S-------S------S-------S------S-------------------S---
-S-----S-S-S------------S------S-----S---SS--S--------S--S------------------S---
----------------------S-SSSS--------------S----S-----SS
>forward_700
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----------------------------------------TTTCGGTAAAGCGAGCTGGT--------------------
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>reverse_1966
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---------------------------------------------TTGCATTGCACGTATGGCAA---------------
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-------------------------------------------------------
