>input_sequence_71201
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----------ACTCAGAAACCGAAACACA-----CGAACGT-CTCA----------CC---TCACTCTCTGGC--ACTCG
ACCTTGGTTGCGCAAACATGGGCAACGTCCTGCCGCTCCCACGGATGTGCAAGGAAACCAGGGTGATGGACGCCACCGT-
--CGCCGGAGCAGCCAAGATGGTGAAGAGGAAAGAGTGGCCGGCGGCGGCCAAGGACGCCGTCGCCAGGGCGGATCAATA
CGGCGTCGA------------------------GGA---GAAGGAGGTGGCGTGGCCGGAGTGCCGCGCGGAGGACGGCG
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------GTGCGGTTGAAGGTACTGATGACGAGGAAGGAGGCGGCGGAGTTCATGGCGAGGCTGG
AAGAGCAGGCCGCCGCGGAGAGTGAATCCAGGACGGGGGAGGTCCTCGCCGGCGGCGC------GTTGAGCCCGCCGTGC
GAGGTTGCGTGGAGGCCCCGTCTCGCAACCATACCAGAGACGTACTAGCAACTAGCTTCCTCTATCT----CGGCTTCTC
CACGCATAGCTTGACTTGACCACGT-CGGGCGTTTTGTACG----TACTGACGTTG--GCTAGTAGCTGTACATTATCGG
-GATACTAGCGCTAGATATTTTTT-CAGATGC-------------TCAGATCATGTACGTGGTTGTTCCTCTTGTTTTCT
GTAAGATTATCCCTGGCCAAACA---------------------------------------------------------
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----------------------------------------CTTTTGTTAGGACATTGACAGTG-AAGCATAAATTTGTTT
TACATGT-------TTGCTAATGGTCAGTTGCCTGAAATTAAA-------------------------------------
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----
>chr1D_1_TraesCS1D01G391400
CATGAAGCACGGAGCTCGAATCAGCGATTGGAGGAGCTGCAACAGTGGATCAAAGGAGCTGCAATCGGAGATTTTGGAGA
AGCTACAACCAGTTGTGGCTGGAGGCGACCCTTCGACAGCGAAAACCTAGAACCGTGCTGCATGGAGCTGCAACCCTCAG
ATGGGGAGCTACAATCAACGATTTTACGGGAAGGGGATCTGCAAACGTGGATTGTTGTGGGCGAGGCGGTGAGGGATAGG
GCGCCGTTGCGGTGGGCACAGGCGACCGGCATGGGGGCCGCGGTGGACGGCGCCAGCGAGGCT-------------TGCC
CTGTTGCACCTGGGGTCCAAAGGACTAGGGAGTGTCTGCACCCGCGCCACATCTTCACGTAAGGGAAGGGAGAGAGGGAG
G-AAAAAGCGCAGACGAGACAAGACAATGCATCCAACATCCGAGCAGGCGAATGATCTGGCGCTTGGGCCGGTCGGCCGG
CGCCTAACGGTGGGCCAAAATATAATGCATACATTCATGAG----------------------------CGTACTCTCGT
CGCAAAGCACGGGCACTCATCTAGTCCTAGAAAAACTAACGATAGGGGCGGGGGTTGATCTAGAACATGGCAGTCTCATC
TGAT-GAAGACAAAATTAGTTAATGTCCTCTACTCGAGTGTCCAATTCTCATCTTG-----------------ACCAGAG
GGCATAAACCCTGAATACATAGATAGTGG--------------------------------------CATCCATTCTTGA
TCGATCCTACGCCGTACATAGATAGTGGCATTCTAGAAATACTCGATTCAGAACTAACAATATGCTTGATCGACCTACG-
--CC--GTGCTTGACCAGCGCTAG-TTTTTTGCCCGCCCCTCACTGCACGCAGGCCACGAAATCATCTCGCGATTGCTGC
GCTGCTGACACTTCGACGCCTCAT---------------------CTTTGAACGAGTCTCCTTGGCCCGCCTCCGTGTCT
CATCTGCTCTGCCACTTCGTCTCCT----CCACCTCGGCGCCT-GATCAATCCCTATATAATAACAAACACAGAGAGAGA
GAGAAGTGTCACTCAGAAACCGAAACACA-----CGAACGT-CTCA----------CC---TCACTCTCTGGC--ACTCG
ACCTTGGTTGCGCAAACATGGGCAACGTCCTGCCGCTCCCACGGATGTGCAAGGAAACCAGGGTGATGGACGCCACCGT-
--CGCCGGAGCAGCCAAGATGGTGAAGAGGAAAGAGTGGCCGGCGGCGGCCAAGGACGCCGTCGCCAGGGCGGATCAATA
CGGCGTCGA------------------------GGA---GAAGGAGGTGGCGTGGCCGGAGTGCCGCGCGGAGGACGGCG
GG------------------------------------------------------------------------------
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----------------------GTGCGGTTGAAGGTACTGATGACGAGGAAGGAGGCGGCGGAGTTCATGGCGAGGCTGG
AAGAGCAGGCCGCCGCGGAGAGTGAATCCAGGACGGGGGAGGTCCTCGCCGGCGGCGC------GTTGAGCCCGCCGTGC
GAGGTTGCGTGGAGGCCCCGTCTCGCAACCATACCAGAGACGTACTAGCAACTAGCTTCCTCTATCT----CGGCTTCTC
CACGCATAGCTTGACTTGACCACGT-CGGGCGTTTTGTACG----TACTGACGTTG--GCTAGTAGCTGTACATTATCGG
-GATACTAGCGCTAGATATTTTTT-CAGATGC-------------TCAGATCATGTACGTGGTTGTTCCTCTTGTTTTCT
GTAAGATTATCCCTGGCCAAACA---------------------------------------------------------
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----------------------------------------CTTTTGTTAGGACATTGACAGTG-AAGCATAAATTTGTTT
TACATGT-------TTGCTAATGGTCAGTTGCCTGAAATTAAAATGGGCGTCGGTCAATTGTGTTGAAAAAGAGGGCGG-
GGCAGTGAGTCGGATGCGGTGTCACCGTCGAGGGTGAGTAAAAGGGAGCGGCCACAAGACAGTCGACTGAATTTTTCGAA
CGGGTCAGTCAGATTCTATTTCAATCTTTGGATCAAAATCTAACGCACAGCCTTCGTTTTCAACCTCGCGCAGCTTGTTC
TTCTTTCTCACCCACTGTCTCACCCAACCGCCCCTTCGGACCATTGGCCACCACCGGCCGCGCTGCCTCGCCGCCCCGCC
CTGCCCTCAACCTCCTCCCACCGTCATTTTGTCGCCGTCCTCGGCCATCCCTCTAGCCCCGGCGATGGCCGGTTTTTTTC
TCCGGCAAAGACCCACCACCGCCCTCATCCTGAACCCTAAGATAGATAATGGGGTGATGATGGTGAGTCCCTACCTTCTC
TCCGGCGAGGTCACTCATTCCTTCATTCAAAATCGACTGACCCGAATTTGAAATTCAGTTGACTGGCATGTAGCTAAACT
AAAGTTTTAAATAGCCGGCTATAGCCCTGCTATATCGACTTAAGCAAGGTGCCGTTAAATAATATTTATGTACAATTGTC
TAATAAAGTTACAAAACAGTGCGGCTATAGCTCACGAACGAGGTACCGTTATTTGACATAGCCCGCAATGAGTGTCAGAC
GTAGGGACGGTTACCTGCAAGAAGGGCGTAGAGAATGGCCGGAGCGAGTCAACATCCAGTATCCCCGTTGTATCAGTACA
CGTTGCGTCGATGGAAAATGCAGGCATTTCACTACGTCAGTTCCGTGTCACGACGACGTACCGTATGTACGTGTACAACA
GGACGCTCGCCGTTGCCATCATAGGTGGACTCCGGGGACCGAGACTGTAAGAGCATCTCTAACATACCCCTTAAAATCAC
GATCAGCATAAGTGTTTTGCGGGCTCAGGAAAACAGACTATAAGGATCGATTTTAACTGCGGCCGAACACAACCCGTAAA
AAAA
>chr1B_1
CATGAAGCACGGAGCTCGAATTGGCAATTGGAGAAGCTGCAACAATGGATCAAA-------GAATCGGAGATTTTAGAGA
AGCTACAACTAGTTGTGGCTGGAGGTGACCCTTCGACGGCGAAAACCTAGAACCGTACTGCATGGAGCCGCAACCGACAA
ATGGGGAGCTACAATTGACGGTTTTAGGGGAAGGGGATCTGCAAAGGTGGACTGTTGTGGGCGAGGTGGTGTGGGATAGA
GTGCCGTTGCGGTGGGCACATGCGACCAATGCGGGGGCCGCGGCGGACGGCGCCAGCGAGGCTGCGAGCA-GGGCATGTC
CTATTGCACCTGGGGTCCGAAGGACTGGGGAGTGTCTACGTCCATGCCATGTGTTCATGTAGGGGAAGGGAGAGGGGAAG
G-AAAAAGCGCAGACGGGACAAAAACATGCATCCAATGGCCGAGGAGGCAAACGATCTGGCGCTTGGGCCGGTTAGCCGG
CGCCTAAGGGTCGGCCAAAATATAATGCATACATTCATAAG----------------------------TGTTCTCTCGT
CGCAAAGCACGGGCAGTCACCTAGTTCTAGAAAAACTAACTATAGGGGCGGGGGTTGATCTAGAACATGGCAGTGCCATC
TGAT-GAAGACAAAATTAGTTAAAGTCCTTG-CTCGAGTGTCCAATTCTCATCTTGGCCAACAAAACATTTTGACCAGAG
GGCAGAAGCCCTGAATACATACATAGGTAGATTCAAAACTAACAATACCGTAACACGAACACATTACCATCCATTCTTGA
TCGATT--------------------------------------------------------------------CTACG-
--CC--GTGCTTGACCAGCGCTATATTTTTCGCCCGGCCCTCACTGCACGCAGGCCACGAAATCATCTCGCGATTGCTGC
GCTGGTGACACTT-GACGCCTCAT---------------------CTTTGAACGAGTCTCCTTGGCCCGCCTCCGTGTCT
CATCTGCTCTGCCACCTCGTCTCCT----CCACCTCAGCGCCTCGACCAATCCCTATATAAT------------------
----------AACAAAC------------ACACACGAACGT-CGCCAGCACCTCCTCC---TCACTCTCTAGC--ACTCG
ACTTTGGTTGCGCAAACATGGGCAACGTCCTGCCGCTGCCACGGATGTGCAAGGAAACCAGGGTGGTGGACGCCACCGT-
--TGCCGGAGCTGCCAAGATGGTGAAGAGGAAAGAGCGGCCGGCGGCGACCATGGACACCGTCGCCAGGGCGGATCAATA
CGGCGTCGA------------------------GGAGGCGAAGGAGGTGGCGTGGCCGGAGTGCCGCGTGGAGGACGGCG
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------GTGCGGTTGAAGGTGCTGATGACGAGGAAGGAGGCGGCGGAGTTCATGGCGAGGCTGG
AGGAGCAGGCCGCCGCGGAGAGTGAATCCAGGAACGGGGAGGTCCTCGCCGGCGGCGT------GTTGAGCCCGCCGTGC
GAGGTTGCGTGGAGGCCCCGTCTCGCAACCATACCGGAGACGTGTTAGC-------TTCCTCTATCT----CGGCGTCTC
CACGCATGGCTTGACTTGACCACGTCCGGGCGTTTTGTACG----TACTGACGTTG--GCTAGTAGCTGTACATTATCGG
-GATACTAGCGCTAGATATTTTTTTCAGATGC-------------TCAGATCATGTACGTGGTTGTTCCTCTTGTTTTCT
GTAAGATCATCCCTGGCCAAACA---------------------------------------------------------
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----------------------------------------CTTTTGTTAGGACATTGACAGTG-AAGCATAAATTTGTTT
TACGTGT-------TTGTTGATGGTCAGTTGCCTGAAATTTGAATCGGCGTCGGCCAATTTCGTTGAAGAAGGGGGTGGA
GGCAGTGAATCGGATGCGGCGTCTCCGTC---------------------------------------------------
--------------------------------------------------------------------------------
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----
>chr1A_2
-ATGAAGCACGGAGTTCGAATCGGCGAATGGAGAAGCTGCAACAGTGGATCGAAGGAGCTGGAATCGGAGATTTTGGAGA
AGCTACAACCAGTTGTGGCTGAAAGCGACCCTTCGACGACGAAAACCTAGAACCATGCTGCATGGAGCTGCAACCGACAA
ATGGGGAGCCACAATCGACGATTTTAGGGGAAGGGGATTTGCAAAGGTGGACTGTTGTGGGCGAGGCGGTGAGGGACAGA
GCGCCATTGCTGTGGACACAGGCGACCAGCGCGTGGGCCGCGACGAACGGCGCCAGAGAGGCTGCCCAAAGGGGGATGTC
CTGTTGCGCCT-GGGTCCGAAGAACTGGGGAGTGCCTGCGTTCGCGCCACGTGTTCACGTAGGGGAAGAGAGAAAGGAAG
GGAAAAAACACAGACGAGACAAAACAATGCATCCACCGACCGAGGAGACGAACAATCTGGCGCTTGGGCCGGTCGGTTGG
GCGC-------CGGCCAAAATATAATGCATACATTCATCAATGTTCTATATAATGCATACATTCATCGATGTTCTCTCGT
CGCAAAGCACGGGCACTCACCTA-TCCTAGAAAAACTAACGGTAGGGACGGGGGTTGATCTAGAAAATGCCAGTGTCATG
TGATTGAAGACAAACTCAGTTACTGTTCTCTACTCGAGTGTCCAACTCTCATCTTGG-----------------------
-GCAGAAGCCCTGAATACGTAC-----TAGATTCAAAATTAACAATACCGTAACAAGAGGACAGTACCATCCATTCTTGA
TCGATC--------------------------------------------------------------------CTACG-
--CCCCGTGCTTGACCAGCTCTGTAC-TTTCGCCCGCCCCTCACTGCACGCACGCCACGAAATCATCTCGCGATTGCTGC
GCTGATGACACTT-GACGCCTCAT---------------------CTTTGAACGAGTCTCCTTGGTCCGCCTCCGTGTCT
CATCTGCTCTGCCACTTCGTCTTC---CCCC-CCTTGGCGCCTGCATCGCTATATAAATCACGCACGC------------
-AGAAGTGTCACTCAGAAATCGAAACACAACACACGAACGT-CGCGGCCACCTCCTCC---TCACTCCATAGA--AGTCG
ACCTTGGTTGCGCAAACATGGGCAACGCCCTGCCGCTGCCACGCATGTGCAAGGAAACCAGGGTGATGGACGCCACCCT-
--CGCCGGAGCAGCCAAGATGGTGAAGAGGAGAGAGCGGCCCGCGGCGGCCAAGGACGT---------------------
---CGTCGA------------------------GGA---GAAGGAGGTGGCGTGGCCGGAGTGCCGCGTCGAGGACGGCG
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------GTGCGGTTGAAGGTGCTGATGACGAGGAAGGAGGCGGCGGAGTTCATGGCGAGGCTGG
AGGAGCAGGCCGCCGCGGAGAGTGAATCCAGGACGGGGGAGGGCCTCGCCGGCGGCGT------GATGAGCCCGCCGTGC
GAGGTTGCGTGGAGGCCCCGTCTCGCAACCATACCGGAGACGCACTAGC-------TTCCTCTATGT----CGGCCTCTC
CGCGCATGGCTTGACTTGACCACGTC-GGCCGTTTTGTACG----TGCTGACGTTG--GCTAGTAGCTGTACATATATTC
AGATACTAGCGCTAGATATTCG-----GATGC-------------TCAGATCATGTACGTGGTTGTTCCTCTTGTTTTCT
GTAAGATTATCCCTGGCCAAACCTTTTGTTAGGACTTGACAGTGGAACATAAATATGTTTTACATGTTTGTTGATGGTCA
GTTGCCTGAAATTAAAATGGGCGTCGGCCAATCTCGTTGAAGAAGGGGTGAGGCAGTGAATCGGACGCAGCGTGTCCGTC
GAGGGTGAGGCAAGACCGAGTCGGAGATAAGGACAATGTGTCAAACCACGGTGTCGCGAGAGGCAAAGGCTTGACGGCAA
AGTTTATAATAGCCGGCTATAGCCCTGCTATATCGACTTAAACAAGGTGCCCTTAAATAATATTTATGTGCAATTTTCTA
ATAAAGTTCAAAATAGTGCGGCTATAGCTAACGAACGGGGTGCCATTATTTGACATAGCCCGCAACGAGTGTCGACGTAG
GGACGGTTACCCCGTTGTATCAGATCACGTTGCGTCAATGAAAAATGCAGACATCTCGCCGTTGTATCAGTGCACGTTGC
GTCGATGAAAAATCAGTACACGTTGGCTATGGCATACATTGTGGATGCTCTAACTACGTCAGTTCCGTGTCACGACGACG
TACGGTGCGTACGTGTACACAGGACACTCTCGCCGTTGCCATCATGGGTGGACTCCGGGGATCGAGACAGTAACATATGC
CGGCACCTTGAGTTCGACCCCTCCGAGCCATATACTCTTGGTCGTGTCCTGCCACCATAACTGCCAAACCAATCGCCATG
TTGCAGACCCGTTCCAAGGTACCTAGCTAGCTAGACGCGCATAAACAAAATGTTCTCCGTCCATGACATGACAGGTTCAG
ACTTTTTGATGACCTATAGATGGCCCTTTAACTACTGAGTGCTGATGAAACAAAATCGGACCTAGAATCACAGGCTTGGG
TGCTGCAGTTTAAAGTTTACACTAAACATCATCATAATTTTAATAAATGGTATGAAAATGGCAACAACTTGATGAATATT
TAGTGTGAAGTATATAATAATTTTTTTTACAATTTCGGAGGGGGTGTGCCATGGCACGCACGGCACCCCTGCTAGATCTG
CCACTAAACAAAATGTTCTCCATCAATGACAGGACAAGAATAGGTCGACTCCCACCCCGTGACCCCCGCGTCGCCTCCCT
TGACGGCGGCAGGGGAACCATAGCCTGCGCCGCCGCGGCCCCCCCACACTTCGCCCCCACCTCCTCGCTGGCATCAGAGG
AGTGGTCAGCGAAGCCGCGTCGGCTCCTAGGAAGATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATCCATTGGCTTCCCTCTCCCCGGCC
CTTGCCCGCCCCTTCCCTTCGGGCTCCGGTTGCTCCTCCATTCGTCGGCGCGTCCTCACCCTCCCGCCATACTCTCGCAC
CAGGTACGAGGCCGCTGCCAGCACCCATGTAGTTCAAATTTTGGTTTGTTGTTGCATGTACATGTAGTTTAAATTTAAAT
TACAATCAATAAATGGCTAGAAACTCACTTAATGTCTTAAAAAGGCCAAATAAACCCTGAAAATTTTAAATTTTAACATA
ACATTTGTATTCTTGAATGGTAACAGTAAAAAAAATATTGCATACAATTCAAATACTATTTGTTGTATCCAATATTAGTC
ATCAATACAAAAATTCAAGTACATCACACACAATGTCTTATAGGAATCGTTTGCGATGAAAATTCATGGGTCTATTTATG
TTTACGCCAGAAGTCTCGTCGGCTTGGTCTAGCTCAAGTGTCGCTCACCCTCAATCCCCATTCCCCAACCCCTTTTTTTG
TAAATTGTTGTATGGTTGCTGCCTCTGCCTCGAGCATTTCCGCATCTGCCGACAGGGCAGCTGCAGCAGCCGAGACGGCT
GCAGCATGCAGCTTTTGCGTCGGCGGCCGCAAAAGCCGAGAACGCTCGAGTAGCCGTCCAGGGGCTTCCACGAACTGAAA
AAGAAGAAAAGGAAGAAAAAAAAAAGTAATCCTAGTTGGTTAGTGCGATTCTTGCTGAACGAAGAGGTCAGTTCGATTCA
CCTCGATCTCCTTCGTGGCTTCGTTTTAATGTGTTTAAGGAGTTGTACCTCCGATCTTCTATTCTAAACCAATACCGTAA
CGACGACAGCAGCGTCATCCATGCTTGATCGACCCGACGGTCCGTGCTTGACCAGCGCTATTTTTTTCCCCGGCCCTCAC
TGCACGCAAGCCACGAAATCATCTAGCGATTGCTGTGCTGGTGACACTTGGCCACTGATGACTGATCAACCGAATGCCAT
CTTTCACCTTTGAACAGGTCTCCTTGGTCCGCCTCCTCTGCTAGTTGGTCTCCCCACGTCTCGGCGCCTCGATCGATCCA
CGCAGAAGTGTCACTCAGAACTCTAAACAGACGAACGGCGCCACCGCCTCCTCCTCACTCTCTCCATGGTTGGTTGCGCA
AACATGGGCAACGTCCTGCCGCTGCCAGGCGCGTGCAGGGAAACCAGGGTGGTGGACGCCACAGTCGCCGGTGCCAGGAG
GGTGAAGAGGAAGGAGCGGCCGGCGGCGGCCAAGGACGTCATCGAGGAGAAGGAGGTGGCGTGGCCGGAGTGCCGCGTGG
AGGACGGCGGGGCGCGGTTGAAGGCGCTGATGACGAGGAAGGAAGCGGCGGAGTTCATGGCGAGGCTGGAAGAGCAGGCC
GACGCGGGGAGTAAATCCAGGACGGCGGAGATCCTCGCCGGCGACGACATCATGAGCCCGTGCGGGGTTGCGTGGAGGTC
TCATCTCGCGACCATACCGTAGGCCTACTAGCTTCCGCTATCCCTGGCCGAGCCGGCCGCCTCTCCACGTCGGACGTTTT
GTACGTAGTGACGCAGCTGTACATTTTCGGAATACTAGAACCAAATGTATGCTCGTAACTTTCAGATCGATCATGTACGT
GGTTGTCCCATCTGTTTTCTGTATGACTGGCCAAGCACCTTTTTTTTTAGGAAATTGACAGTGAAAGCATAATTTTGTTT
TCCACGGTTGCTAG-------TGGCCAGTTGCCTGAAATTAGAACCCGGGTTGGTCGATTTTGGCCAAGAAGAGGGC-GA
GGTAGT--------------------------------------------------------------------------
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>chr1B_765
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--------------------------------------------------------------TGCCTGATCGATCCTGCG
CTCC--GTGCTTGACCAGCGCTATTTTTTC--CCCGGCCATCACTGCACGCAAGCCACGAAATCATCTAGCGATTGCTGT
GATGGTGACACTT-GGCCACTGATCGATCGAATGACACCTTTTACCTTTGAACAGGTCTCCTTGGTCCGCCTCCCTGTCG
CTTC--CTCTGCTAGTTGGTCTCC---CCACGCCTCGGCGCCTCGATCGATCCCCATATAAT------------------
----------ACTCAGAACTCGAAAGT-------CGAAACT-CACCACCACCTCCTCC---TCACTCTCTCTAGCACACG
AGCTGGGTTGCGCAAACATGGGCAACGTCCTGCCGCTGCCACGCGCGTGCAGGGAAACCAGGGTGGTGGACGCCACCGT-
--CGCCGG---TGCCAGGAGGGTGAAGAGGATGGAGCGGCCGGCTGCGGCCAAGAACAT---------------------
---CGTGGACGGGGCGGATCAACACGGTGTCTTGGA---GAAGGAGGT---------AGAGTGCCGTGTGGAGGACGGCG
GG------------------------------------------------------------------------------
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----------------------GTGCGGGTGAAGGTGCTGATGACGAGGAAGGAGGCGGCGGCGTTCATGGCGAGGCTGG
AGGAGCAGGCCGCCGCGGAGAGTGAATCCAGGACGGGGGCGATCGGCCGCGGCTTCGC------GATGAGC---CCGTGC
GAGGTTGCGTGGAGGCCTCGTCTCGAAACCATACCGGAGACCTACTAGC-------TTCCGCTATCTCCGCCGGCCTCTT
CACGCATGGTTTGACCACGTCGGGCGTTTTT-TTTTGTACC----TAGTGACGTACTAGCTCGTAGCTGTACAATTTCGC
-GATACTAGCACTAGATAT----T-CAGATGCTCGATCGCAACTTTCAGATCATGTACGTGGTTGCTCCTCCTGTTTTT-
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------------------CTGTATGACTGGCTAAGCACCTTTTCTTTTAGGAAATTGACAGCA-AAGCATAAATTTGTTT
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----
>chr1D_873
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----------------CGTCTCAT---------------------CTTTGAACGAGTCTCCTTGGGCCGCCTCTGTGTCT
CATCTGCTCTGTCAGTTCGTCTCC---CCCCACCTCGGCGCCTCGAGCGCTATATGTACAACACAGTC------------
-GGAAGTGTCGCTCAGAAACCAAAACACA-----CAAACGCCCGCGATCACCTCCTCCTCATCACTCTCTAGA--ACTCG
ACCTTGGTTGCGCAAACATGGGCAACGTCCTGCAGCATCCACGCATGTGCAGGGAAGCCAGGGTGGTGGACGCCACCGT-
--TGCTGG---AGCCAAGATGAGGAAGAGGAAGGAGCGGCCAGCGGCGGCCAAGGACGT---------------------
---CGTCGA------------------------GGA---GAAGGAGGTGG---------AGTGCCGCGTGGAGAACGACG
GGG-----------------------------------------------------------------------------
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-----------------------TGAGGTTGAAGGTGCTGATGACGAGGAGGGAGGCGGCGGAGTTCATGGCGAGGCTGG
AAGAGCAGGCCGCAGCGGAGAGTAAATCCAGGACGGGGGAGATCCTCGCCGGCGGCGC------GATGAGC---CCGTGC
GAGGTTGCGTGGAGGCCTCGTCTCGCAACCATACCGGAGACGTACTAGC-------TTAGCTATTT----CCGGCCTCTC
CACGCATGGTTTGACCACGTCGGGCC--TTT-TTTTGTACC----TAGTGACG---TAGCTCGTAGCTGTACAATTTCGG
-GATGCTAGCACTAGATATTCA-----GATAC----TCGTAACTTTCAGATCATGTACGTGGTTGTTCCTCCTGTTTTCC
GTA-----------------------------------------------------------------------------
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-----------------------TGACTGGCCAAGAGCCCCTTTTTTTAGGAAATTGACAGTG-AAGCATAAATTTGTTT
TTTGCG-------G-------TGGCCAGTTGCCTGAATTTAGAATCGGGGTAGGTCGATTTTGTTGAAGAAGAGGGC-GA
GGTGGTGAGTCAGCTGTGGCGTCTCCATCGAGGGCGAG------------------------------------------
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>chr1B_876
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-------------------CTCAT---------------------CTTTGAACGAGTCTCCTTGGGCCGCCTCTGTGTCT
CATCTGCTCTGTCAGTTCGTCCCCCCACCCCACCTCGGCGCCTTGATCGCTATATGTATAACACAGTC------------
-GGAAGTGTCGTTCAGAAACCAAAACACA-----CAAACGCCCACGATCACCTCCTCC---TCACTCTCTAGA--ACTCG
ACCTTGGTTGCGCAAACATGGGCAACGTCCTGCCGCATCCACACATGTGCAAGGAAACCAGGGTGGTGGATGCCACCGT-
--TGCCGG---AGCCAAGATGATGAAGAGCAAGGAGCGGCCAGCGGCGGCCAAGGACGT---------------------
---CGTCGA------------------------GGA---GAAGGAGGTGG---------AGTACCGCGTGGAGAACGGCG
GGGTGAGTGTAGAAGTGCATGCTCTAGCCAATGCAACCAAAAGACCGATCTGATGGAAGAGACTAGACAACACATTATAC
GTCAACACTCCCCCTCACGTGTGGCTCCCTCGGGCCTAAACGTGGACCGAAAGTGGGCTGCAATTTTAATTGCGCCAGCC
GGGTCTTGAACTCAAGACCTCTTGCCTCTGATACCATGTAGATTATGTGAATTGCACGATGTATTGCTCTCCATGCATAG
GCACGTATATATGATGTGCAAAGATGGGCCACGGACCTCAACTATACAGAAACTAGGAGGTGGGCCCAATACACAATATG
CACATAACACATATACTCAACAATGAGGTTGAAGGTGCTGATGACGAGGAAGGAGGCGGCGGAGTTCATGGCGAAGCTGG
AAGAGCAGGCCGCCGCGGAGAGTGAATCCAGGACGGGGGAGGTCCTCGCCGGCGGCGACCGTGTGATGAGC---GCGTGC
GAGGTTGCGTGGAGGCCTCGTCTCGCGACCATACCGGAGAACTACTAGC-------TTAGCTATCT----CCGGCCTCTT
CACGCATGTTTTGACCACGTCGA-TC-GGGCGTTTTTTTGTACCATAGTGACG---TAGCTCGTAGATGTACAATTTCGG
-GATACCAGCACTAGATATTCA-----GATGC----TCGTAACTTTCAGATCATGTACGTGGTTGTTCCTCCTGTTTTCT
GTA-----------------------------------------------------------------------------
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-----------------------TGACTAGCCAAGCACCT-TTTCCTTAGGGAATGGACAGTG-AAGCATAAATTTGTTT
TTCGCG-------GTTGCAATTGACCAGTTGCCTGAAATTAGAATCGCGGTTGGTCGATTTTGTTGAAGAAGAGGGC-GA
GGTGGTGGGTCAGCTGCGGTGTCTCCGTCAAGGGCGAG------------------------------------------
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----
>chr2B_990
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-------------------------------------------------------------------------------A
GGGAAGTGTCACTCAGAACTCGAAACACA-----CGAACGA-CGCCACCACCTCCTCC---TCACTTTCTCTAGCACACG
AGCTTGGTTGCGCAAACATGGGCAACGTCCTGCCACTGCCACACACGTCCAGGGAAACCAGGGTGGTGGACACCACCATC
GCCGCCGG---TGCCAGGAGGGTGAAGAGGAAGGAGCGGCCAGCAGTGGCCAAGGACAT---------------------
---CGTTGA------------------------GGA---AAAGGAGGTGGCATGGCCAGAGTGCCGCGTGGAGGACGGCG
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------ATGCGGTTGAAGGTGCTGATGACGAGGAGGGAGGCGGCGGAGTTCATGGCGAGGCTGG
AGGAGCAGGCCGCAGTGGAGAGTAAATCCAGGACGGGCGAGATCCTCGTCGGCGGTGACGGTGTGATGAGC---CCGTGC
GAGGTTGCATGGAGGCCCCGTCTCGCAACCATACCGGAGACGTACTAGC-------TTCCTCTATCT----CGGCCTCTG
CACGCATGACTTGACTTGACCACGTC-GGGCGTTTTGT------------------------------------------
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----
>SNPs
----------------------S----------S---------------------------S------------------
-------------------------------------S-------------------------------------SS--S
----------------S---------S------------------S-----S---------------------------S
---------------------------S--SS-----------S----------------------------------S-
------------------S-------S------------SS---------S-S--------S---------------S--
----------------------S--------------SS-----S-------S---------------------------
-------S---S--------------------------S------------------------------S--S-------
-------------------S------------------------------------------------------S-----
--------------------------------------------------------------------------------
----S--S-------------S----SSS---------------------------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------S------
-----------------------S------S-------------------------------------------------
----S--------S------------------------------------------------------------------
---------------------------------------------------------------SSSSSSSSSSSSSSSS-
-------------------------------------------S-S------------------------S---------
-------------------------------------S------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------S-----------
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------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-------------SSSSSSS-------------------S----
-------S------------------------------------------------------------------------
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-----------------------------------------S---S--------------S-------S-----------
-----------------------S----------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_815
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CTTGA
TCGATCCTACGCCGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
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----
>reverse_5564
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CGCACAGCCTTCGTTTTCAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
