>input_sequence_71193
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-------------------------------------------------------ATGGCGGGCGCGTCCTCGTGGTCGT
CGTCCTGCTCGTGCACGTCGTCGCTCGGCTCCTTGGATGACGACGATGTGTTCTGCGTCGTGAAGCCGGGTTCCCCCGGG
GCAGCTGCAGAGGGCAGCGTCAAGTTCCTGTGCAGCTACGGGGGCATGATCCTTCCACGCCACCCCGACGGCGCGCTCCG
CTACGTCGGCGGCAACAACCGCGTCCTCTCCGTCGACCGCTCCCTTCAATTTCACGGTACATGCCTAT----TACCAACG
ACGCCTCCTGCTGTCCATTGATCGTTTCCGGCACTCCAGCCAGTTCAGCTGTTTGACTGTGGATCGATCGATCGCTTCAG
AGCTGCAACGGAAGCTGACGGACATGTGCGGATGGGAGGCGTTGAGCCTGCGGTGCCAGCTGCCGACGGAGGACCTGGAC
GCGCTCGTCTCCGTCACGACCAACGACGACCTCGGCCACCTGCTGGAGGAGTACGACGCCGCCAGCAGGGACCGGCTCCA
GCCGCTCAAGATAAGGGCGTTCCTGTTCCCAAGGGCCAAAACGCCGCCGCTCTCGCCGTCCACCCCGTCGTCCAGGCCAA
CGCCGGCGTACGTCCGCCACCACCACCAGCACCACACGGCTCGCCCCCCTCCGGCTCGTGGGCATTCGGGCCACCGGCGC
CCACACCAGCTCCTGCTCCTCCACAACGGCAGTTGGTTGCAATAA-----------------------------------
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>chr6A_1_TraesCS6A01G217000
CTTCTCATGAAAGCACATATTTTTTTCATTTTTGAGAAGCACATCCCGTGGAAGCATAATTTTTTCCATGCAAAAAAAAA
AACTCCATGATTTTTGTCTTCTCCAAAACCTAGAAAAAACTAGACGAAAACAAAAAAGAAAGCCAACTAAAACCCAAAAA
CTC-ATACAGAAAAAATTTAAAATTGAGAGGGAGCGCCTAGCACGCGACATGTGATAGCGGCTAAACGTGCCCCCAGGGC
ATCCAAAATGACCTCTGAAGGTCCCCGTAGGGGATAACCTTTAGTTAGTTGCTCTCGCTTTAGGGAGGTGGTCAGATCAA
ACAAGTTCGGTCAGGCATCCAACCAAACACTGCCCTACGCCTCATACCCCTTTGGGCCACAGTGACCATGCGAAGGTTTA
GAGTAGGGATCATCCATGACAAAACAGATAAAAAATTTCCAGGACTCCAGTGGCTCCGCCGAAGGCTTCAAGCAGCTTGA
AAATGTATTCAATGCATCCATTTTTATGGCGCTACCGGTGCACCAATGACACACTTTAAAACGTTTAAAAAAATTAAAAA
AGAATAGCTCATTGACACAACATAAACCAATGTTGTCAGAAAATTTCAAATCAAAAATCGAAACATAGCTTGAGAT---T
ATCTGCGGGATTTATTATCAATAGAGATAATGGATCAAATTCAAAGCCCAACTTGTGTTATATATTACTCAATATCGATT
TTTCGTACCCTAAGCTATATTTAAAATTTGA---------TTGTAACAACATGGGTTGATGTTTGATATTTTCTTTAGAA
ATTTTCAAACATTTTAAAATGTGCTACAGAAGTTCAATGCACCGGTGACACCACAAGGGTGAGTGCACATATATTCTTCC
CTCTTGGGGCTACGGTACAGGTGGATGCTGGAGCCACCGCTCCAAAACACACAGAA--ACACACACAGCTTCTTGCGTTC
TCAAACACTGATATCGACTTGCAGCTTCAGTGTCGTCCACCGCCGGCAAGAAGGCATGGCGGGCGCGTCCTCGTGGTCGT
CGTCCTGCTCGTGCACGTCGTCGCTCGGCTCCTTGGATGACGACGATGTGTTCTGCGTCGTGAAGCCGGGTTCCCCCGGG
GCAGCTGCAGAGGGCAGCGTCAAGTTCCTGTGCAGCTACGGGGGCATGATCCTTCCACGCCACCCCGACGGCGCGCTCCG
CTACGTCGGCGGCAACAACCGCGTCCTCTCCGTCGACCGCTCCCTTCAATTTCACGGTACATGCCTAT----TACCAACG
ACGCCTCCTGCTGTCCATTGATCGTTTCCGGCACTCCAGCCAGTTCAGCTGTTTGACTGTGGATCGATCGATCGCTTCAG
AGCTGCAACGGAAGCTGACGGACATGTGCGGATGGGAGGCGTTGAGCCTGCGGTGCCAGCTGCCGACGGAGGACCTGGAC
GCGCTCGTCTCCGTCACGACCAACGACGACCTCGGCCACCTGCTGGAGGAGTACGACGCCGCCAGCAGGGACCGGCTCCA
GCCGCTCAAGATAAGGGCGTTCCTGTTCCCAAGGGCCAAAACGCCGCCGCTCTCGCCGTCCACCCCGTCGTCCAGGCCAA
CGCCGGCGTACGTCCGCCACCACCACCAGCACCACACGGCTCGCCCCCCTCCGGCTCGTGGGCATTCGGGCCACCGGCGC
CCACACCAGCTCCTGCTCCTCCACAACGGCAGTTGGTTGCAATAACAGCGGGATTAGCAGCCGCGTGCTGATGTATTAGC
TTGGCAGTCGTGAGATCGTCCATGGGGCGCTGTGCCGCTGTCGCTCACGAATTTGTAAGCCCTGCTTTGCATGTTTCATA
ACATACGTACG---------------------------------------------------------------------
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-----------TACTACTGTAGTAACAGACCTATTAGCTTGGCTTATTTTAAATAAGATTCAGGGTCTGTTCAAAAAAGA
GAAGTATGTGTACGAGTCGTTCTTTCCTTTCCTTTTCACTTTTTTCGTGATCAAAAGTGTGGATAAGTCCCGAAAACCAA
AAGGACAGACGCAAGGGCGATAAGGTTCGTTGGGCGGATTGCGCAGCCAGCCTGTCTGTCTCGTCTCTTTCTGACTTCAT
TCATGTCTTGTCCGGCTAATTTTGTTCCATTCCGAATCCGGAGTGTTCCTTCCGGCCGCCTAATGTGTGGATAGAGTGAC
GCGCTACGCCACTAGAGACCGGGACAACCTAGCATCCCTGGGAGGCCGAAATCACCGTTCTAATCTTGTGAGAACTCTTC
ATCACTCGTACACGTAATTATTTTGCAAAATGATTTATTTTTTTGAAAACGGCACAGCCCGTGCCGTTTTAGATGAACAT
GAAAACGCCAAACAAGCCAGCAACCAAGCCAGCGCTGGTGCCTTGGCCGACAGTTAGGCCTCGCTGGCGTTGCAAGTTGA
CATGGA----TTGAAACGCCAAGGCTCATGGCGTTTCTGGGCCTCAAACGCCAAGGCCTATGGTGTTTCTGTTTTAGATA
TTTAAATGGTGATGGGGCTCTCATCCACCACTCATCACTCACTCTTTTCTCTTTTGTTGGTCTATCTTCAGCTCTTGCCT
TTTCCTTGTTTTGTCTCCTCCACTTAAACCCTCTCAAATTCTTACAGATCGATTGCGTTGGTCCGTTAATTCGGTGTCAT
TTTCGTTCCTCGAGCTAATATCTTTCATCTCACAAATTTGTATTGGCTGGATTTGTCTATTTGGATGGTTTTTTTTCATG
TGGATCCTA
>chr6D_1
CTTCTCATGGAAGCACATACTTTTTCCATTTTCAAGAAGCACAGCTCGTGGAAGCATAATTTTTTTCATGCAAA----AA
AACTCCATGATTTTTGTCTGCTCCAAAACCTAGGAAAACCCAGAT--AAAACAAAAAAAAAGCCATCAAAAACCCAAAAT
CCGTATAGAAAACAATTTTAAAATTAGGAGGGAGCGCCCAGCATGCGACATGTGATGGCAGCTAGGCGTGCCCACAAGGC
ACAAAAAATGACCTTTGAAAGTCCCCGCAGGGGATAACCTTTAGTTAGTTGTTCTCACTTCAAGGAGGTGGTCAGGTCAG
ACAAGTTCGATCAGGCATCCAACCAAACACTACCCTATGCCTCATG-CCGTTCGGCCCACAGTGACCATGCGAAGGCTTG
GAGTAGTGATCAGCCATGACAAAATAGACAAAAAGTTTCTAGGACTCCCGTGGCTCTGCCGAAGGCTTCAAGCAGCTTGG
AAATGTATTCGATGCATCCATTTTTCTGGCACTACCGGTGCACCAGTGACACACTTTAAAACGTT---------------
--AATAGCTCATTGACAAAACATGAACCAATGTTGTCAGAAAATTTCAAATCGAAAATCGAAACATAGCTTGAGAT---T
ATATGCGGAATTTATTATCAATAGTGATAATGGATCAAATTCAAAGCCCAACTTGTGTTATGTATTATTCAATATCGAAT
TTTTGTACCCTAAGCTATATTTCAAATTTGATTTAAAATTTTGTAACAACATGGGTTGATGTTTGATATTTTTTCTAGAA
ATTTTCAAACATTTTGAAATGTGCTACGGAAGTTCGATGCAACGGTGACACCACGAGGGTGGGTGCACATATATTCTTCC
CTCTTGGGGCTACGGTGTAGGTGGATGCTGGAGCCACCGCTCCAAAACACACAGAATCACACACACAGCTTCTTGCGTTC
TCAAACACTGAT-----CTTGCAGCTTCAGTTTCGTCCACCGCCGGCAAGAAGGTATGGCGGGCGCGTCCTCGTGGTCGT
CGTCCTGCTCGTGCACGTCGTCGCTCGGCTCCTTGGACGACGACGACGTGGTCTGCGTCGTGAAGCCGGGTTCCCCCGGG
GCAGCTGCAGAAGGCAGCGTCAAGTTCCTGTGCAGCTACGGGGGCATGATCCTTCCACGCCACCCCGACGGCGCGCTCCG
CTACGTCGGCGGCAACAACCGCGTCCTCTCCGTCGACCGCCCCCTCCAATTTCACGGTAAATGCCTG-----TACCAACG
ACGCCTCCTGCTGTCCATTGATCGTGTCCGGTACTCCGCCCAGTTCAGCTGTTTGACTGTGGATCGATCGATCACTTCAG
AGCTGCAACGGAAGCTGACGGACATGTGCGGATGGGAGGCGGTGAGCCTGCGGTGCCAGCTGCCGACGGAGGACCTGGAC
GCGCTCGTCTCCGTCACGACCAACGACGACCTCGGCCACCTCCTGGAGGAGTACGACGCCGCCAGCAGGGACCGGCTCCA
GCCGCTCAAGATAAGGGCGTTCCTGTTCCCAAGGGCCAAGACGCCGCCGCTCTCGCCGTCCACCCCGTCGTCCAGGCCAA
CGCCGTCGTACGTCCGCCACCAGCAC---CACCACACGGCTCGCCCCCCTCCGGCTCGTGTGCATTCGGGCCACCGGCGC
CCGCACCAGCTCCTGCTTCTCCACAACGGCAGTTGGTTGCAATAACAGCGGGATTAGCAGCAGCGTGCTGGTGTATCAGC
TTGGCAATCGTGAGATCGTCCATGGGGCGCTGTGCCGCTGTCGCTCAACGGATTGTAAGCCCTGCTTTGCT---------
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---------------------GTAACACACTTATTAGCTTGGCTTATTTTAAATAAGATTCAGAGTCTGTCCAAAAAAGA
GAAGTATGTGTAGGAGTCGTTCTTTCCTTTCCTTTTCACTTTTTTCGTGATCAAAAGTGTGGATAAGTCCCGGAAACCAG
CAGGACAGACGCAAGGGCGATAAGGTTCGTTGGGCGGATTACGCAGCCAGCTAGCCTGTCTCGTCTCTTTCTGACTTCAT
TCATGTCTTGTCCGGCTAGTTTTGTTCCATTCCGAATCTCGAGTGTTCCTTCCGCGC----GATATGTGGATGGAGTGAC
ACGCTACGCCACTCGAGACCGGCATAACCTAGCG-CCCTTGGAGGCCGAAATCACTGTTCTGATCTTGTCAGAACTCTTC
ATCACTCGTCCATGAAATTATTTTACAAAATGACA---TTTTTTGGAAACTTCATAAACCATGGCGTTTCAGATGAACAT
GAAAACGCCAAACAGGCCATCAACCAAGCCAGCATTGCTGCCTTGGCCCACGGTCAGGCCTTGCTGGCGTTGCAAACTGA
CGTGGCAGGCTTGAAACGCCAAGGCCCATGGCATTTCTGGGCCTCAAACGCCAAGGCCTATGGCGTTTCTGCTCTATATA
TTTAAGTGATCGTGGGGCTCTGACCTATCACTCACCACTCGCTCTCTTCTCCCCCATTGGCCTGTCTCCAGCTTTTGCCC
TTTTCTCCTTT-GTCTCCTTCACTTAAACCCTCTCATATCGTTGCAAATCGATTGCG------------TTCGGTGTCAT
TTCCGTTCCTCGAGCTAATATCCTTCATCTCACAAATTTGTATTGGTTGGATTTGTCTATTTGGATGGT--TTTGTCATG
TGGATCCTA
>chr6B_571
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-----------TTGACACAACATGAACCAATGTTGTCAGAAAATTTCAAATCAAAAATCGAAACATAGCTTGAGATACCT
ATATGCGAAATTTATTATCAATAGAGATAATGGATCAAATTTAGAGCCCAACTTATGTTACGTATTATTCAGTGTCGAAT
TTTTGTACCCTAAGCTATATTTCAAATTTGATTTAAAA------------------TGATGTTTGATATTTTTTGTTGAA
ATTTTCAAATATTTTAGAATGTGCTACGGAAGTTGGATGCACCGGTGACACCACAGGGGTGGGTGCACATATATTCTTCC
CTCTTGGGGCTACGGTATAGGTGGATGCTGGAGCCACCGCTCCAAAACACACAGAAACACACACACAGCTTCTTGCTTTC
TCAAACACTGAT-----CTTGCAGCTTCAGCGTCGTCCACCGTCGGAAAGAAGGCATGGCGGGCGCATCCTCGTGGTCGT
CGTCCTGCTCATGCACGTCGTCGCTCGGCTCCTTGGATGACGACGACGTGGTCTGCGTGGTGAAACCGGGTTCCCCCGGG
GCG---GCAGAGGGCAGCGTCAAGTTCCTGTGCAGCTACGGGGGTATGATCCTTCCACGCCACCCCGACGCCGCCCTCCG
TTACGTCGGCGGCAACAACCGCGTCCTCTCCGTCGACCGCTCCCTCCAATTTTACGGTACATGCCTATACCATACCAATG
ACTCCTCCTAATGTCCATTGATCGTGTCCGGCGCTCGAGCCAGTTCAGTTGTTTAACTGTCGATCGATCATC-----CAG
AGCTGCAACGGAAGCTGATGGACATGTGCGGATGCGAGGCGATGAGCCTGCGGTGCCAGCTGCCGACGGAGGACCTGGAC
GCGCTCGTCTCCGTCACGACCAACGACGACCTCGGCCACCTGCTGGAGGAGTACGACGCCGCTAGCAGGGACCGGCTCCA
GCCGCTCAAGATAAGGGCGTTCCTGTTCCCAAGGTCCAAAACGCCGCCTCTCTCGCCGTCCACCCCGTCGTCCAGGCCAA
CACCGGCGTACGTCCG------CCACCAGCACCACACGGCTCGCCCCCCTCCGGCTCGTGTGCATTCGGGCCACCGGCGC
CCACACCAGCTCCTGCTCCTCCACAACGGCAGTCGGTTGCAATAACAGCGGGATTAGCAGCCGCGTGCTGGTGTATTAGC
TTGGCAGTCGTGAGATCGTCCATGGGGCGCTGTGCCGCTGTCACAG----ATTTGTAAGCCCTGCTTTGCATGTTTCATA
ACATATACTCCCTCCGTTCCCAAATATTTGTCTTTCTAGGCATTTCAAATGAAAACAACATATGAATGTATGTAGACATA
TTTTAGAGTGTAGATTCACTTATTTTGCTCTGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTTAAAACG
GAGGGAGTACATACTACTGTAGTAACAGACTTATTAGCTTGGCTTATTTTAAATAAGATTCAGAGTCTGTCCAAAAAAGA
GAAGTATGTGCAGGAGTCGTTCTTTCCTTTCCTTTTCACTTTTTTCGTGATCAAAAGTGTGGATAAGTCCCGGAAACCAG
AAGGGCAGACGCAAGGGCGATAAGGTTCGTTAGGCGGATTGCGCAGCCAG----CCTGTCTCGTCTCTTTCTGACTTCAT
TCATGTCTTGTCCGGCTAGTTTTGTTCCATTCCGAATCTAGAGTGTTCCTTCCGGCCGCCTGATATGTGGATGGAGTGAC
ACACTACGC-----------------------------------------------------------------------
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>SNPs
---------S---------S-----S------SS---------S-S-------------------S--------SSSS--
-------------------S-------------S----S-S---SSS---SS-----S-------S-S-----------S
-SS----S-S--S--S---------SS-----------S----S------------S--S----SS-------S--S---
-SSS----------S----S-------S-----------------------S----S---S-S------------S---S
---------S---------------------S-----S-------SS--S--S--S--------------------S--S
------S-----S-----------S---S-----S----S--------S-------S----------------------S
----------S--------------S----S--------------S-------------------SSSSSSSSSSSSSSS
SS---------------------S--------------------------------------------------------
--S-----S----------------------------------------------------S-----S----------S-
---S------------------S-------------------------------------------------S-S-----
---------------------------S-------S-------------------------S------------------
-----------------S--------------------------------------------------------------
------------SSSSS---------------------------------------------------------------
----------------------------------------------S---S-----------------------------
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---------------------------------------------S----------------------------------
-------------------------S-----------------------------------------------S------
-----------------------------------------S--------------------------------------
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------------------------------------------------------------S-------------------
----------------------------------------------------------------------S---------
-----------------------------------------------SSS------------------------------
-----SSSS-S---------------------------------------------------------------------
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------------------------------S--------------------------------S------S---------
------------S-----------------------------------------------------------S------S
---------------------------------------------------SS-S-------------------------
------------------S-------------------SS---------------------S--S-------S-------
S------------S--------S-S--------SS----S---------------S-----S-------S----------
---------S--S-S---------S--------SSSSS-------S----SS--S-SS--S--S-----S----------
--------------S----S-------------SS--S----------S--S--S------S-------------SS---
-S---S-------------------S------S------------------------------S-------S-S--S---
-----S--S-SS---------S-S-S-S------S-----S----S-----SSSSS----S--S---S-----S-----S
---S--SS---S-------S----------------S--SS--S--S----------SSSSSSSSSSSS-----------
--S-------------------S-----------------------S----------------------SS---S-----
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>forward_367
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---------------------------CACTGCCCTACGCCTCATAC---------------------------------
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>reverse_2343
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----------------------GACAACCTAGCATCCCTGGG--------------------------------------
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