>input_sequence_71181
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-------------------------------------------------------ATGCAGATCTTTGTGAAGACCCTGA
CGGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAAGGT
AGGTCGATTTGTCCTTTGCTTCGTCTCCCGGCTGATCGATGTGCCGGCCAC-TATCATGGCCGCCATTTCTCCGGCCGCG
TTTACTAAATGCATATGCTTTGCGCTGAGTACT--TGTACATATTTGTCGTGAGTGCAGGGATCCCGCCGGTGCAGCAGC
GGCTGATCTTCGCCGGGAAGCAGCTGGACGAGGGCCGCACGCTGGCCGACTACAACGTCCAGAAGGAGTCGACGCTCCAC
CTGGTGCTGCGCCTCCGTGGCGGCAGCCGCGGCGGCCGCCCCACCTCTATCCCGCCCAACCTCCTGCAGCTCGCGCTCAA
GCACAACGAGAAGAGGATGGTCTGCCGCAAGTGCGTATACGATCGACCATTGCCGTGCAATTGAGTT-------------
CAC----GCGTGCGTGCCTATGACTGATTCTGTTGCTGTATTTTC-TTGGTTGCAGGTGCTATGCGCGCCTTCCCCCCAG
GGCTACCAACTGCCGCAAGAAGAAGTGCGGCCACACCAACGAGGTGAGCTAGCGTAGTATAATCAACTTATGCTGTGTG-
---------------TTGATGCCTTGATCTGATGTACTGTATTAATTTTCAGCTGAGGCCCAAGAAGAAGTTTGTTTGA-
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>chr6D_1_TraesCS6D01G137400
TTCTTCACGCGCGTGCATCCCCTTCTGCCCCCTTCCCCCTCCTTTTTGCGTGTCGTGACTGGTAAATATATACGCATAAA
TACTACTCCCTTCGTTTCTAAATATAATTTTTATAAAGATTCCACTATAGACTACATACGGAGCAAAATGAGTGAATCTA
CACTCTAAAATGCATGTACATACATTCGTACGTGATTTATAGTGAAATCTTTAAAAAATTTATATTTAGGAACGGAATGA
GTATTCATTATGCCGTACCGTGTGCTTTTTTCTCTCCCACCCCTCCTTTACTTCATGCCGAGCGCGCCTGGCTCACAGTG
TTGTCTAAACGGCCCGGCCTGATTCAGCCTAGATAAACATGTATGTTTCTCTTTTTTCTTTATTCCTAAAGTTTCCAAAA
-TCATATCTCACTCATTTTAAATCCAAATCTAGTGATTTTTTTTTCTAAATT--------CAAGCTTTCTTCAATGACAC
CACTTCTCTAAATTTTGGGGTTTCCTGTATATTTTCTTATTTTCCTTTTTTGGCGATTAGTTATTACTCGGAAACAGATC
TGTACCGGAAATAAGGTT-GTTGCGGTTGGAAAT-----------ATTGTTGTA------------------------TG
GAAGCAAATTGCATGAGGCCTTGTTAAATAGATGTACCGTGATTTCACTAAAAAAAAGATGTACCGTGATTTATGGGAGT
AGTTATCAAGGAAACTATGAAGAGATTAACGAGACTTCTTTCTCTTTTGAGTTTTTCTGGCGGACCTGTCGCGCAAGATC
TTTGGTCTTCCCCTGAAACCGATGAAAAAAAGAAATTAT-----------------------------------------
--TAGTGTAATATTCTCCATGCAAACTAACTAATTTGATGTGATCATGCATTGGGTTTTCGTAGCGCTTGCGTTTCCTAC
-------CCCCTCCCCACTTCTATATAAGGGCGCCACCCACCCCGGCCATTCCCCGTTCCCATCACGACCACCGTCACCT
ACGCGTATCCTACCTCTTGGGCTCGAGCGAGAGCGCGGTTGGTCGTTCCGGCGAGATGCAGATCTTTGTGAAGACCCTGA
CGGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAAGGT
AGGTCGATTTGTCCTTTGCTTCGTCTCCCGGCTGATCGATGTGCCGGCCAC-TATCATGGCCGCCATTTCTCCGGCCGCG
TTTACTAAATGCATATGCTTTGCGCTGAGTACT--TGTACATATTTGTCGTGAGTGCAGGGATCCCGCCGGTGCAGCAGC
GGCTGATCTTCGCCGGGAAGCAGCTGGACGAGGGCCGCACGCTGGCCGACTACAACGTCCAGAAGGAGTCGACGCTCCAC
CTGGTGCTGCGCCTCCGTGGCGGCAGCCGCGGCGGCCGCCCCACCTCTATCCCGCCCAACCTCCTGCAGCTCGCGCTCAA
GCACAACGAGAAGAGGATGGTCTGCCGCAAGTGCGTATACGATCGACCATTGCCGTGCAATTGAGTT-------------
CAC----GCGTGCGTGCCTATGACTGATTCTGTTGCTGTATTTTC-TTGGTTGCAGGTGCTATGCGCGCCTTCCCCCCAG
GGCTACCAACTGCCGCAAGAAGAAGTGCGGCCACACCAACGAGGTGAGCTAGCGTAGTATAATCAACTTATGCTGTGTG-
---------------TTGATGCCTTGATCTGATGTACTGTATTAATTTTCAGCTGAGGCCCAAGAAGAAGTTTGTTTGAG
C---GAGCGAGAGAGCAATTCTGCTTCGTCTGCTATTCTTTCGTT-GGCGTCGTCCGGCATGGACCAGCTGAATAAATCG
TCTTAGCATCGTGTCCGTGTCACGGTTTTAAGTTTTTTTT-----------------AGGGTGTCAGGGTTTTAAGTTGA
GTCGATCGTTAGTTTCATAGTCAAGTTCAACGCAATATAAAATGTCAGT--CCGGATATTGTAATCCTTCGCAACCTGTT
TTTTTCCTTCTTCTTTT---TCTTCTCAGTTTTATCATTCACCTTCTGACGCAATCGGCCTGCTACAACAAAATCCGAGT
TAAATTGAGATGTAA----TTTTAATCCATGACAAATTATCATTGAAGCATTCATCCCTTTATGGTAAGTCACCTATTAA
TCTATTTGAAACTTGATGATTTA-AAAAAAACAATTTCCCGAATAATTAACTAATATTATATGATAGAGCCCTGTATGGC
ATGCAATTTTATATTGTTTAACTTGATAATGGAGTTGCTGACCAGGAACAGTTGGACAGAACCCGAATAACCCCC-----
----CACACACAAATAACGATAGATTCCGAATAAGATCAGATACAAATTCTAAATGGGGAA-------------------
--------------ACATCAAAGTATGTCTAGTCGAGAAAATCCATATAAGGAGACTGCTACATGAAGAAATCTTCCACT
TCATGAATTGCTAAATTTGCTTTTTAAATAATTTTCTTGCAAATGGATTAATTGGACTAGACGACTAGTTACCCCATTGT
GTAAAACAATGTGCAGTAACCTGGACTGTAGACGATACCCAGTGCATTGCTGCCGGAATTACTTGAAATTATGTTAATGG
GATATGGTTGCATGAACATTTCTTGGATTAATAATACTAAAGATTGAAACAAAAACTCATGAAATTCATTGTATTTAATA
GTTTTTTGGAGT--AAGTAAATAATTCCACTTAGGGGGTCTCATTAGCCCTACATG-AATAGTCAATAAATCCCAAGGCG
GTTAAAGAAAACGAACCTAGAAGGAGAATCAAAGC
>chr6A_289
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------------------------------------------------TACTTCATGCCGAGCGCGCCGGGCTCACAGTG
TTGTTTAAACGGTACGGCCTGATTCGGCCTAGATGAACATGTATGCTTCTCTTTTTGCTTTATTCCTAAAGTTTCCAAAA
CTCATGTCTCACTCATTTTAAATCCAAATCTAGTGAAACTTAAAAAAAA-------TCAACAAGCTTTCTCCAATGACAC
CACTTTTTTAAAATTTGGGGTTTCCTGTATATTTCCTTATTTTCCTTTTTTGGCGATTAGTTATTACTCGGAAACAGATC
TGTACCGGAAATAAGGTTCGTTGCGGTTGGAAAATATTGTACTCCATTTTGGTA------------------------TG
GAAGCAAATTGCATGAGGCCTAGTTAAAT---------------------------AGATGTACCGTGATTTATGGGAGT
AGTTATCAGGAAC-------------------------------------------------------------------
--------------------------------AAATTGT-----------------------------------------
--TAGTGTAATATTCTCCATGCAAACTAACTAATTAGATGTGATCATGCATCGGGTTTTCGTAGCGCCTGCGTTTC----
----CTACCCCTCCCCACTTCCATATAAGGGCGCCACCCACCCCGGCCATTCGCCATTCCCATCACGACCACCATCACGT
ACGCGGATCCTACCTCTTGGGCGAGAGCTCGCTCGCGGTTGGTCGTTCCGGCGAGATGCAGATCTTCGTGAAGACCTTGA
CGGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAAGGT
GCGTCGATTTGTCCTTTGCTTCGTCTCCCGGCTGATCCATGTGCCGGCCAC-GATCACGGCCGCCATTTCTCTGGGCGCG
TTTATG-CATGCATGTGCTTTGCGCTGAATACTACTGTACATATTTGTCGTTCGTGCAGGGATCCCGCCGGTGCAGCAGC
GGCTGATCTTCGCCGGGAAGCAGCTGGACGAGGGCCGCACGCTGGCCGACTACAACGTCCAGAAGGAGTCGACGCTCCAC
CTGGTGCTGCGCCTCCGTGGCGGCAGCCGCGGCGGCCGCCCCACCTCTATCCCGCCCAACCTCCTGCAGCTCGCGCTCAA
GCACAACGAGAAGAGGATGGTCTGCCGCAAGTGCGTATACGATCGACCACTGCCGTGCAATTGAGAT-------------
CATGCGTGCGTGCGTGCCTATGACTGATTATGTTGCTGTGTTTTC-TTCGACGCAGGTGCTACGCGCGCCTTCCCCCCAG
GGCTACCAACTGCCGCAAGAAGAAGTGCGGCCACACCAACGAGGTGAGCTAGCGTAGTCTAATCAACTTATCATGTGTG-
---------------TTGATGCTTTGATCTGATGTACTGTAATGAATTTCAGCTGAGGCCCAAGAAGAAGTTTGTTTGAG
CAGCGAGCGAGCGAGCAATTCTGCTTCGTCGGCTATTCTTTCGTTGGGCGTCGTCCGGCATGGACTAGCTGAATAAATCG
TCTTAGCATCGTGTCCGTGTCAGGGTTTTAAGTTTTTCTTTTTCTTTTTCTTTTTTGAGGGTGTGAGGGTTTTAAGTTGA
GTCGATCATTAGTCTCATAGTCAAGTTCATCGCAATATAAAATGTCAGT--CCGGATATTTTAATCTTTGCAAGCTGGTT
TTTC-----CTTCCTTTTCATCTTCTCAGTTTTATCATTCACCTTCTGACGCAATTGGCCTGCCACAACAAAATCCGAGT
TCGATTGAGATGTACTACTTTTTAATCCGTGACAAATTATCATTGAGCATTCA---------------------------
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>chr6B_364
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-------------------------------------------TGTTTCTCTTTTTTCTTTATTCCTAAAGTTTCCAAAA
TTCATATCTCACTCATTTTAAATCCAAATCTAGTGAAACTTTTTTTAAATAGTAATTCAACAAGCTTTCTCCAATGACAC
CACTTTTGTAAAATTTGGGTTTTCCTGTATATTCGCATATTTTCCTTTTTTGGCGATTAGTTATTACTCGGAAACAGATC
TTTACCGGAAATAAGCTTCGTTGCGGTTGGAAAT-----------ATTGTATTTTTGTATGGAAGCAAATTGCATGCGTG
AAAGCAAATTGCATGAGGCCTAGTTAAAT---------------------------AGATGTACCGTGACTTATGGGAGT
AGTTATCAGGAAACAAGTTACCTCCGTTCCTAAATAATTGTCTTTCTAGAGATTTTAACAAGTGACTACATACGAAGCAA
AATGAGTGAATCTACACTCTAAAACATGTCTACATACATCCGTATGTTGGCTAGAAAGACAATTATTTAGAAACGGAGGG
AGTAGTTCAATATTCTCCATGCAAACTAACTAATTAGATGTGATCATGCATAGGGTTTTCGTAGCGCTTGCGTTTCCTAC
AATCCTACCCCTCCCCACTTCTATATAAGG-CGCCACCCACCCCGGCCATTCGCCATTCCCATCACGACCACTGTCACGT
ACACGAATCCTACCTCTTGGGCGAGAGCGAGCGCGCAGTTGGTCGTTCCGGCAAGATGCAGATCTTCATGAAGACCCTGA
CTGGGAAAACCATCACGCTCGAGGTCGAGAGCAGCGACACCATTGACAATGTCAAGGCCAAAATCCAGGACAAGGAAGGC
AGGTAGATTTGCCCTTTGCTTCGTCTCCCGCCTGATCGATGTGCCGGCCAC-GATCATGGCCGCAATTTCTCCGGCTGCG
TTTACTACATGCATATGCTTTGGGCTGAACACT--AGTACATATTTGTCGTGAGTGCAGGGATCCCGCCGGTGCAGCAGC
GGCTGATCTTCGCCGGGAAGCAGCTGGACGAGGGCCGCACGCTGGCCCACTACAACGTCCAGAAGGAGTCGACGCTCCAC
CTGGTGCTGCGCCTCCGTGGCGGCAGCCGCGGCGGCCGCCCCACCTCTATCCCGCCCAACCTCCTGCAGCTCGCGCTCAA
GCACAACGAGAAGAGGATGGTCTGCCGCAAGTGCGTATACGATCGACCATTGCCGTGCAATCGCATGCTTATATACGTGC
GCAC-----------------GACTGATTCTGTTGCTGTGTTTTC-TTGGTTGCAGGTGCTATGCGCGCCTTCCCCCCAG
GGCTACCAACTGCCGCAAGAAGAAGTGCGGCCACACCAACGAGGTGAGCTAGCGTAGTCTAATCAATTTATCATATGTG-
---------------TTCATGCCTTGATCTGATGTACTGTATTAATTTTCAGCTGAGGCCCAAGAAGAAGTTTGTTTGAG
CAGGGAGCGAGCGAGCAATTCTGTTTCGTCGGCTATCCTTTCGTTGGGCGTCGTCCGGCATGGACCAGCTGAATAAATCG
TCTTAGCATCGTGACTGTGTCAGAGTTTGAAGTT--------------------------------------------GA
GTCTATCGTTAGTCTCATAGTCAAGTTCATCTCAATGTAAAGTGTCAAAGCCCGGATATTTTAATCCTTCGCAACCTGGT
TTTC-----CTTCTTTT---TCTTCTCCGTTTTATCATTCACCTTCTGACGCAATCGGCCTACTACAACAAAATCCGAGT
TAAATT--------------------------------------------------------------------------
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>chr5D_845
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----------------------------------------------------GGGCTTTCGTAGCGCCTGCTTTTCCTCC
CCTCCCCCTGGC-------TCTATATAAGGGCGCCATGCACTACTGCCATTCCTCATTCCCATCACGGCCACCGAAGC--
ACGCGAACCCTACCTCTCGAGCGAGTGCGAGCGCGCCGTTGGCCGTCCCTGCAAGATGCAGATCTTTGTCAAGACCCTGA
CCGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGT
ACGTATGAAT----------------------TGAATGATCTGCCGGCCTGGGATCTTCGCCGCCAATTTTCGATCCGGG
CGCATCTGTTAACTTCTCTCTTGATCTGCTCTACTTGATGTACATCTGTT---GTGCAGGTATACCGCCGGACCAGCAGC
GGCTGATCTTCGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTCCAC
CTGGTGCTGCGCCTCCGCGGGGGCAGCCGCGGCGGCCGCCCCACCGGAGTCCCGCCCAACCTCCTGCAGCTCGCGCTCAA
GTACAACGAGAAGAGAATGGTCTGCCGCAAGTACGTATATACGATGTACCACGCACCCATAGATTCCCATCTCCATATGA
CATGCATGCATTCATGCCTGCTACGATGGACTGATGTTGCTCTTCGTTGCATGCAGGTGCTACGCGCGCCTTCCTGCCCG
GGCGACCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACGAGGTTCGTTTGTTTTTCGGCTAGCGATTCTTGACATCTT
GTGGTCGAAGTTTATTGGATGGTTTGATCTGATTTGTGCTC---ATTTTCAGCTGAGGCCCAAGAAGAAGTT--------
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>chr6B_2004
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-AAATTGAGATGTAA---TTTTTAATCTGTGACAAATTACCATTGAAGCATTCATCCCTTTATGGT-AGTCACCTATTAA
TCTATTTGAAACTTGATGATTCTTAAAAAAACAATGTCCCGAATAATTAACTAATATTATATGATAGAGCCTTGTATGGC
ATGTAATTTTATATTGTTTAACTTGATAATGGAGTTTCTGACCAAGAACAGTTGGACAGAACCCGAATACCCCCCCCCCA
CACACACACACAAATAACGACAGATTCCGAATAAGATCTGATACAAATTCTAGATGGGGAAATCTAAGTTGGGCGTCTGT
TTCTCAAGTCTTACACATAAAAGTATGTCTAGTCGAGAAAATCCATATAAGCAGACTGCTACATGAAGAAATCTTCCACT
CCATGAATTGCTAAATTTGCTTTTTAAATAATTTTTCTTGCAATGGATAATTG---------GACTAGTTACCCCAATGT
GTAAAACAATGTGCAGTAACCTGGACTGTAAACGATACCCAGTGCATTGCTGCCGGAATTACTTGAAATTATGTTAATGG
GATATGGTTGCATGAACATTTCTTGGATTAATAATACTAAAGGTTGAAACAAAAACCCATGAAATTTATTGTATTTAATA
GTATTTTTGGAGTAAAGTAAATAATT-CACTTAAGGGGTCTCATTAGCCCTACATGAAATAGTCAATAAATCCCAAGGCG
GTTAAAGAAAACGAACCTAGAAGGAGAATCAAAG-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S-----------
----S-------SS-----------S--------S---------------------------------------------
------------------------------------SSS------SS--SSS------------------S---------
-----S-S----S---------------------S---------------------------------------------
--------------------------------------------------S-----------------------------
---------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
--------S-S--SSSS-S-SSSSSS-SS-S-S-SSSS-S---S-S-S---S----SSSSS-SSS--SSSSSSS---SSS
SS--SSSSSSS-SSS-SS-SS-SSS-SSSSSS------------------------------------------------
-----------------------------------S---------------S----------------------------
-------------------------------------------------------S----------------------S-
-----S----------------SS-------S------------------------------------------------
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----------------------------------------------------S---------------------------
-------S--------------------S---------------------------------------------------
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--S------------------------------------S----------------------------------------
----------------------------------------------------------S------------SS-------
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-----------S------------------S-------------------------------------------------
----------------------S--------------S--------------------------S---------------
-------------S---------------S------------------------------S-------------------
---SSSSSS-----------------------------------------------------------------------
----------------------------S-------------------------------------S-------------
---------------------SS------------S-----------------------------------S--------
---S--------------------------------S-------S------------------------S----------
--------------------S-----------------S-------------S---------------------------
------------------S--------------------------------S----------------------------
S----------------------------------SS-SSS-------S-S-SSSSSSSSSS--------------S---
------------------------------S-------------------------------------------------
------------------------------------------S-------------S---------S-------------
--S----S-SSS--------------S------S----------------------------------------------
----------------------------------S
>forward_267
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-------TTATGCCGTACCGTGTGCTT-----------------------------------------------------
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>reverse_2357
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------------------------------------GCTGACCAGGAACAGTTGGA------------------------
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