>input_sequence_71179
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---------------------------------------------------------------ATGGTGCTGCCGACACG
GAGCGGTGAGCCGGAGGA------GGCGGAGGCGGAGATGGACGATCAGCGCTCGCCGCCGGTCCGCGGCGCCCGGACGA
GCAGGAGCCACAGCGAGGCGGAGCGCAAGCGGCGGCAGCGCATCAACACCCACCTCGCCACGCTCCGCAGCCTCCTCCCG
TCGGCCTCCCAGGTAAGCTCGCTACTTCCCATGCTCGTCAGAGTTATCGGTAGGCTGATGATGCCG-----ACTGAGCCG
GACACG-------------------GCGCGCAGATGGACAAGGCGGCGCTGCTCGGCGAGGTTGTGCGGCACGTGCGGGA
GCTGCGGGGCGACGCGGACGGCGGCGCGGTGGCCGGCGTGGCCGTGCCGGGGGAGAGCGACGAGGTGGGCGTGGAGGAGG
AGCGCTGGGACGCCCGGGAGAGCGCCAAGCGCGTCCGGGCCTGGGTGTGCTGCGCCGACCGCCCGGGGCTCATGTCCGAG
CTGGGCCGCGCCGTGCGCTCCGTCAGCGCCAGGGCGGTCCGCGCGGAGATCGCCACCGTCGGCGGGAGGACGCGGAGCGT
CCTGGAGCTGGAGGCCGGGCAGGCGGCGGGCGCGTCCCGGCCGGCGCTGCACGCGGCGCTCCGCGCCGTGCTGCTCACCC
GGGAGGACCAGCTGCTCGCCGTGGAGGGCTACAAGAGGCAGTGCTTCTCGGCGCTCATCTCCCAGGGTTTAGGCAGCTAG
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>chr5D_1_TraesCS5D01G252300
CCATTCATTGAAGGCGGGCAGCGGGAGGATCAGCCGGAGCACACGCCGTCCCTGTTGCGCTACATCGACCGCGTGTCAGC
CCAGCACGGAGCAAAAGGGCGGGGGGCCGATGAACCCGACGGTGTTGTTCCCCTCTCGGGCCTCTCGCCGGCCCGCCCGC
TCGGCCGGACCCCGGAGAGAACCACGAGTCCTCACAGTGCC------GCCGCATGGCGCACTACGTCGACGCGGACGTGG
ATCATGAGCGTAGCTTTT-CCCCTGATTCCCTTGTAACCTAAAGCGGCGGCGCGTTGCAGCGCCCGTTGTTACGGCGGGA
GGGGGCACGGCA-------------------------------------TCATCTGTCCGTCCGTCCCGTCCC-------
-----TTTTGCTGGACGTTTTTACCGGGAAAAAAATCATCGGGCCTTTGACCGCTCGCTCGTCTTTGGCTGTCCATCCCC
GACACGCAGTATATCCCGCAGGGTCCATCGGCCAATCGGTCACGCACAACACAATGCACATGTACTGGCCGCGGTACGCG
CACCGTTTATCTGATGGTGGTGTAGCG-----CCGGCGTTAAAGGAGAAACAGTGGAGTTTTGTTCGCCGACACTTTTTC
ACCG--------CCGTCGACCCGTCGGACAGAATTACCACGCACGTACGT---------TCCAAAGGCCCGGCAAAAGCG
GCATCCGTCCATCACAAA-TAGTTGCACGTCACGCGGGAAAGAGGCGACATGGTATATGAGCTGCAGTCGCCGCTGTCGT
TTGATCGATCGCTCGTTCGTTCGTTTTCAATTTTACCACCCTCTCTCTAACACGGGGGGTAAAAAGGCGCCGAGGAGTTA
-----GTGGCAAGGTCAGCAGGGCGTCACGCGCGGACGCAGCTTTTGTGCCGCGCGTAGCTCCTCTCGGCCCGACCGGCG
CCGCGGATCGGGACACCGTCGAGCGACCGCGCCCGACGCGGTAAAGCCGCGCGTGTCGGCGCCAC---------------
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-CCTTATTTAACGCCCCGGCTTCCCGCCTCCCGGTCGTTTCAAACGGCTCCAAGT---CCAAGATGGTGCTGCCGACACG
GAGCGGTGAGCCGGAGGA------GGCGGAGGCGGAGATGGACGATCAGCGCTCGCCGCCGGTCCGCGGCGCCCGGACGA
GCAGGAGCCACAGCGAGGCGGAGCGCAAGCGGCGGCAGCGCATCAACACCCACCTCGCCACGCTCCGCAGCCTCCTCCCG
TCGGCCTCCCAGGTAAGCTCGCTACTTCCCATGCTCGTCAGAGTTATCGGTAGGCTGATGATGCCG-----ACTGAGCCG
GACACG-------------------GCGCGCAGATGGACAAGGCGGCGCTGCTCGGCGAGGTTGTGCGGCACGTGCGGGA
GCTGCGGGGCGACGCGGACGGCGGCGCGGTGGCCGGCGTGGCCGTGCCGGGGGAGAGCGACGAGGTGGGCGTGGAGGAGG
AGCGCTGGGACGCCCGGGAGAGCGCCAAGCGCGTCCGGGCCTGGGTGTGCTGCGCCGACCGCCCGGGGCTCATGTCCGAG
CTGGGCCGCGCCGTGCGCTCCGTCAGCGCCAGGGCGGTCCGCGCGGAGATCGCCACCGTCGGCGGGAGGACGCGGAGCGT
CCTGGAGCTGGAGGCCGGGCAGGCGGCGGGCGCGTCCCGGCCGGCGCTGCACGCGGCGCTCCGCGCCGTGCTGCTCACCC
GGGAGGACCAGCTGCTCGCCGTGGAGGGCTACAAGAGGCAGTGCTTCTCGGCGCTCATCTCCCAGGGTTTAGGCAGCTAG
TGACACGATGATGCTCTGCGCCACCATGTTTGCTTCACAAGCGTGTATCAACCTGTAGGATTAGTAGGCTTATAAGTATA
TCACAGA--ATTTAGTTTGATCTGTGTTTTCCCGTTCAGC-TGGCTTTGCAATCACTGAATC---ATGTCCTTCAGGTTC
TGTAATGGCAGTGTGAAAGTACAGGCACTGAGAGAAATTTAGACAAATGTCAGCACAGTAGCCTCTGGA-TTTAACACAT
CAACCGGTTGCTGTTTGTTTGCCAGTGATATACTGTAGAACAGAGAGTTGCTGATGCAGCATTATGAATGATAGCAGAAC
AGTCGCCTAGTACCGTTTGGAATCTTAGCAGTACAG--AGTCATGAAAAGGCGGCAAGAAATATCGCTCTCAGATAACAG
AAACCTCCCGATATACAAATAAATAGGAATGGAGATGAGCTACTACAATATTTGGGATGTTATCATCCA-----------
---------------------------------ACAAATGAAGCAGTACAGATTCAAAATAGCATTGCATCACAGTTTTG
CTTATTTGAGTCACACATGCGTTC-AAATAATTATACACTGATAAAACAAACATTACAAGGCTGTATCTTATTGTTACAA
TGATACATGG-ACATTATACAGATGTTACAACACAAGGCCTGCCAAATGTGGCAGCATTACACA-TCGTTTCGTTTGACT
ATGGTTTTGCAGTTTTACTAGCCGCCCTTTCACGATTCTAGACAGAAAACGCATAGCAACTGGATTGAATTCGCTTTGTC
CCGGCAGTTTACAGACTTTACTTTCGTAATAATGTATTGTTCGCTGTGTCGAACTTTACTCCATTGCGGTTTTATTCCTC
TGCAGTGAAAAGAGTTTCAATATCAATACCACCTGGAGCAAGTTGCAATGAAAACAGCAGCAAAATGGCAGAGTAAAACC
ATGCTTAACCACAGGAAGCAGAGTGAACTTTACCAGAGTATAAGTAATGCCTGTTCATTGATCAAGACCAGGTAGACCTG
TTCTTTATGGCATACT
>chr5B_1
CCATTCATTGAACGCGGGCAGCGGGAGGATCAGCCGGAGCACACGCCGTCCCTGTTGCGCTACATCGACCGCGTGTCAGC
CCAGCACGGAGCAAAAGGGCGGGGGGCCGAAGAACCCGACGGTGCTGTTCCCCTCTCGGGCCTCTCGCCGGCCCGCCCGC
CCGCCCGGACCCCGGTGAAAACCACGAGTCCTCACTGTGCCTGTGCCGCCGCATGGCGTACTACGTCGACGCGGACGTGG
ATCATGAGCGTAGCTTTTTCCCCTGATTCCCTTGTAACCTAAAGCGGCGGTGCGTTGCAGCG-CCGTTGTTACGGCGGGA
GGGGGCACACCGCGGTTAAA------------GCAGGCAGGCGGTGGCCATCA---TCTGTCCGTCGCCACTTTTTTGCT
GGACGTTTTGCTGC---------------AAAAAATCATCGGGCCTTTGACCGCTCGCTCGTCTTTGGCTGTCCATCCCC
GAC-----------------CGTAG----GGTCAATCGGTCACG-----CACAATGCACATGTACTGGCCGCGGTACG--
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>chr5A_1
CCATTCATTGAAGGCGGGCAGCGGGAGGATCAGCCGGAGCACACGCCGTCCCTGTTGCGCTACATCGACCGC--------
-----ACGAAGCAAAAGGACGGGGGGCCGAAGAACCCGACGGCGCTGTTCCCCTCTCGGGCCTCTCGCCGGCG-------
--GGCCGGACCCCGGCGAAAACCACGAGTCCCCACTGTGCC------GACGCATGGCGCACTACGTCGACGCGGACGTGG
ATCATGAGC--------------------------------------------------------GTTGTTACGGCGGGA
GGGGGCACGGCGCGGTTAAAGCAAGCAGACAGGCAGGCAGGCGGTGGCCTCATCTGTCCGTCCGTCGCCACTT-------
-----TTTTGCTGC---------------AAAAAATCATCGGGCCCTTGACCGCTCGCTCGTCTTTGGCTGTCCATCCCC
GACACGTACGGCACGTACTCCGTAG----GGTC------------------------------------------ACGCG
CACCGTGTATCCGATGATGGTGTAGCGTAGCGCCGTCGTTAAAGGCGAGGCGGCTC-----TGTTCGCCGACACTTTTTC
ACCGTGATCGATCCCTCGGTCCCTCCGACAGAATTACCACGCACGTACGTACAGTACATTCCAAAGGCCCGGCAAAAGCG
GCACCCGTCCATCACAAAATAGTTGCACGTCGCGCGGGAAAGAGGCGACACGGCGTATGAGCTGCAGTCGCCGCTGTCGT
TTGATCG----CC----CGTTCGATTTCAATTTTACCCCC-----------AGGAGGAGGTAAAAGGCGGCAAAGAGAGT
TGGTGGTTGCAAGGTCAGCAAGGCATCACGCGCGCG-------------------------CCTCTCGGCCCGACCGGCG
CCGCGGATCGGGACACCGTCGAGCGAC---------CGCGGTAAAGCCGCGCGTGTCGGCGCCAC---------------
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-CCTTATTTAACGCCCCGGCTTCCCGCCTCCCGGTCGTTTCAAACGGCTCCAAGTGGCCCAAGATGGTGCTGCCGACACG
GAGCGGCGAGCCGGAGGAGGCGGAGGCGGAGGTGGAGATGGACGATCAGCGCTCGACGCCGGCACGCGGCGCCCGGACGA
GCAGGAGCCACAGCGAGGCGGAGCGCAAGCGGCGGCAGCGCATCAACACCCACCTCGCCACGCTGCGCAGCCTCCTCCCG
TCGGCCTCCCAGGTGAGCTCGCTGCTTCCCATGCTCGTCATAGTCATCGTTGCGGTGATGATGCCAGCTGAACCGAGCCG
GACACGTTTGAC---GGGCGTGCGCGCGCGCAGATGGACAAGGCGGCGCTGCTGGGCGAGGTGGTGCGGCACGTGCGCGA
GCTGCGGGGCGACGCGGACGGCGGCGCGGTGGCGGGCGTGGCGGTGCCGGGGGAGAGCGACGAGGTGGGGGTGGAGGAGG
AGCGCTGGGACGCGCGGGAGAGCGCCAAGCGCGTCAGGGCGTGGGTGTGCTGCGCCGACCGCCCGGGGCTCATGTCCGAG
CTGGGCCGCGCCGTGCGCTCCGTCAGCGCCAGGGCGGTGCGCGCGGAGATCGCCACCGTCGGCGGGAGGACGCGGAGCGT
CCTGGAGCTGGAGGCCGGGCAGGCCGCCGGCGCGTCCCGGCCGGCGCTGCACGCGGCGCTCCGCGCCGTGCTGCTCAGCC
GGGAGGACGAGCTGCTCGCCGTGGAGGGCTACAAGAGGCAGCGCTTCTCGGCGCTCATCTCCCAGGGTTTAGGCAGCTAG
TGACACCATGATGCTCTGTGCCAGCATGTTTAATTCACAAGCGTGTATCAACCTGTAGGATCAGTAGGCTTTTTA-TATA
TCACAGAATATTTAGTTTGATCTGTGTTTTCCGATTCAGCTTGGCTTTGCAATCACTGAACC---ATGTCCTTCAGGTTC
TGTAATGGCAGTGTAAAAGTACAGGCACTGAGAGAAATTTAGACCAATGTCAGCACAGTATCCTCTGGA-TTTAACACAT
CAACCGGTTGCTGTTTGTTCGCCAGTGATGCACTGTAGAACAGAGAGTTGCTGATGCAGCATTATGAATGATAGCAGAAC
AGTCGCCCAGTACCGTTTGGAATCTTATCAGTACAG--AGTCATGAAAAGGAGGCAAGAAATATTGCTCTCAGATAACAG
AAA----------------TAAATAGGAATGGCAATGAACTACTCCCTCCTTCCCGTAATATAGGAGCGCTTTTGACAAA
TGTCAAAAACACTCTTATATTATGGGACAGAGTACAAAGGAAGCGGTACGGATTCAAAATAGCATTGCATCACAGTTTTG
CTTATTTGAGTCAGGCATGCATTCAAAATAATTATACACTGATAAAACAGACATTACAAAGCTGTATCTTATTGTTACAA
TGATACATCAAACATTATACAGATGTTACAACACAAGGTCTGCCAAATGAGGCAGCATTATACATTTGTTTCCTTTGACT
ATGGTTTTGCAGTTTTACTGGCCGCCATTTCACGATTCTAGACAGATAACGCACAGCAGCTGGATTGAATTCGCTTTGTC
CCGGCAGTTTACAGGCTTTACTTTGGTAGTAATGTATTGTTCGCTGTGTCCAACTTTACTCCATTCCGGTTTTATTCCTC
TGCAGTGAAAAGAGTTTCTTTGTCAATACAACCTGGAGCAAGTTGCAACGAATATAGCAGCAAAATGGCAGAGTAAAACC
ATGCTTAACCACAGGGAGCAGAGTGAACTTTACCAGAGTATAAATAATGCTTGTTCATTGATCAAGACCAGGTAGACCTG
TTCTTTATGGCATACT
>chr5B_506
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-ACCGTTTATCTGATGGTGGTGTAGCG-----CCGGCGTTAAAGGAGAAACAGTGGAGTTTTGTTCGCCGACACTTTTTC
ACCG--------CCGTCGACCCATCCGATAGAATTACCACGCACGTACGTACG-----TTCCAAAGGCCCGGCAAAAGCG
GCACCCGTCCGTCACAAG-TAGTTGCACGTCACGCGGGAAAGAGGCGACATGGTATATGAGCTGCAGTCGCCGCTGTCGT
TTGATCG----CTCGTTCGTTCGTTTTCAATTTTACCCC--TCTCTCTAACACGGGGGGT------------------TA
-----GTGGCAAGGTCAGCAGGGCGTCACGCGCGAACGCAG------------GCGTAGCTCCTCTCGGCCCGACCGGCG
CCGCGGATCGGGACACCGTCG--CGACCGCGCTCGACGCAGTAAAGCCGCGCGTGTCGGCGCCACCCCTAGGCTGGTCAT
AGTGAGAGTAACATAGGTAGTAACATAGGTAGTAATATAGATGCCACATAAGTAAAAATGTTAATGTGGCAAGTAGTTAA
TGAGGAGAGAGGCAAATAGAGTAACATAATATGTTACCATCACATAGCGCTTTTCAATGCAAAATGAGTCTACAAGACAA
TAAATGAACATGTGTATGTTACTACACATATGACACTTCCCACTATAAGGGTAGTAACTTAGAGTAGTAACATATGACCA
GCCTTATTTAACGCCCCGGCTTCCCGCCCCTCGGTCGTTTCAAACGGCTCCAAGT---CCAAGATGGTGCTGCCGACACG
GGGTGGTGAGCCGGAG------GAGGCGGAGGTGGAGATGGACGATCAGCGCTCGCCGCCGGTCCGCGGCGCCCGGACGA
GCAGGAGCCACAGCGAGGCGGAGCGCAAGCGGCGGCAGCGCATCAACACCCACCTCGCCACGCTGCGCAGCCTCCTCCCG
TCGGCTTCCCAGGTGAGCTCGCTAGTTCTCATGCTCGTCATAGTTATCGTTGCGGTGATG---CCAACTGAACTGAGACG
GACACGTCGTTTGATGGGCGTGCGTGCGCGCAGATGGACAAGGCGGCGCTGCTCGGCGAGGTGGTGCGGCACGTGCGGGA
GCTGCGGGGCGACGCAGACGGCGGGGCGGTGGCGGGGGTGGCCGTGCCGGGGGAGAGCGACGAGGTGGGCGTGGAGGAGG
AGCGCTGGGACGCACGGGAGAGCGCCAAGCGCGTCAGGGCGTGGGTGTGCTGCGCCGACCGCCCGGGGCTCATGTCCGAG
CTGGGGCGCGCCGTGCGCTCCGTCAGCGCCAGGGCGGTCCGCGCGGAGATCGCCACCGTCGGCGGGAGGACCCGGAGCGT
CCTGGAGCTGGAGGCCGGGCAGGCGACGGACGCGTCCCGGCCGGCGCTGCACGCGGCGCTCCGAGCCGTGCTGCTCAGCC
GGGAGGATCAGCTGCTCGCCGTGGAGGGCTACAAGAGGCAGCGCTTCTCGGCGCTCATCTCCCAGGGTTTAGGCAGCTAG
TGACACGATGATGCTCTGTGCCAGCATGTTTAATTCACAAGCGTGTATCAACCTGTAGGATTAGTAGGCTCTTTA-TATA
TCACAGAA--TTAACTTTGATCTGTGTTTTCCCGTTCAGC-TGGCCTTGTAATCACTGAACCATGATGTCCTTCAGGTTC
TGTAATGGCAGTGTAAAAGTACAGGCACTGAGAGAAATTTAGACAAATGTCAT-ACAGTAGCCTCTAGCTTTTAACGCAT
CAAACGGTTGTTGTTTGTTTGCCAGTGGTATACTGTAGAACAGAGAGTTGCTGATGCAGCACTATGAATGATAGCAGAAC
AGTAGCCTAGTACCGTTTGGAATCTTAGCAGTACAGAAAGTCATGAAAAGGAGGCAAGAAATATCGCTCTCAGATGACAG
AAACCTCCCGATACACAAATAAACAGGAATGGAAATGAGCTACTACAATATTTGTGATGTTATGATCCA-----------
---------------------------------ACAAAGGAAGCAGTACAGATTCAAAATAGCATTGCA---CAGTTTTG
TTTATTTGAGTCACACATGCATCCAAAATAATTATACACTGACAAAACAAACATTACAGAGCTGTATCTTATTGTTACAA
TGATACATGG-ACATTATACAGATGTTACAACACAAGGTCTGCCAAATGTGGCACCTTTATACA-TTGTTTCCTTTGACT
ATGGTTTTGCAGTTTTACTAGCCGCCGTTTCACGATTCTAGACAGAAAACACATAGCAACTGGATTGAATTCGCTTTGTC
CCGGCAGTTTACAAGCTTTGCTTTGGTGATAATGTATTGTTCGCTGTGTCGAACTTTACTCCATTGCGGTTTTATTCCTC
TGCAGTGAAAGGGGTTTTTATGTCAATACAACCTGGAGCAAGTTGCAACCAATATAGCAGCAAAATGGCAGAGTAAAACC
ATGCTTAACCACAGGAAGCAGAGTGAACTTTACCAGAGTATAAATAATGACTGTTCATTGATCAAGACCAGGTAGACCTG
TTCTTTATAGCATACT
>SNPs
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------------------------------S-------------S-----------------------------------
S--------------S--S----------------S--------------------------------------------
--------------------------------------------------S-----------S-----------------
-----------S------------------------------------------------------S-SS-SS-------
-------------SSSSSSSSSSSSSSSS---------------------------------------------------
------S-SSSS-SSSSSSSS-SSSSSSS--S------------SSSSS-------------------------------
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----------------------S--S------------------------------------------------------
---S----------------------------------------------------------------------------
-------SSSS--------------------------S--S-------------------S--------S-S-S---S--
----------------------------------S------SSSSSSSSSSSS---------------------------
--------------------------------S-----------------------------------------------
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--------------------------------S-----------------------------------------------
----------------------------------------------------------------S---------------
--------------S-------------------------S--------S-SS-S----------S--------------
--------------------------------------------------------------S-----------------
---------------------------------S----------------------------------------------
-------------S---------------------S----S---------------------------------------
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-----------------------------------------------------------------------------S--
-----------------------------------------S--------------------------------------
------------------S----S-------SS--------------------------------------S-S-S----
------------------------------------------------------------S-------------------
--------------S-----------------------------------------------------------------
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---------------------------------------------------S----------------------------
-------------S-------------------S--------------------S--------S----------------
--------------------------------------S-----------------------------------------
--------------------S--------------------------------------S--------------------
--------------------------------------S---------------------S-----S-----S-------
--------------------------S-----------------------------------------------------
--------------S---------S-------------------------------------------------------
------------------S--S-------S------------------S---S-S-------------------------
-------------------------------------------S------------------------------------
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>forward_500
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GACACGCAGTATATCCCGCA------------------------------------------------------------
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>reverse_2099
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------------------CGCCACCATGTTTGCTTCAC------------------------------------------
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