>input_sequence_71176
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-------------------------------------------ATGGCCAACGACGGGTCCCCCAAGTCCGGTGACATCC
CGCCCTACCCCGAGGTGAGTTTCTCCCAGTTTTGACGCTCTGCTTCAGTGCCTTCCGCCGTAGATTCGTCGGCGGCGCAT
CATTTCCATGTTTGGTACTAGATCCTTCTCCTTGCCGGCCGCGGCCTGAGCGCCTCTGCTTCTCCTCGCAGATGATTATC
GCGGCGATCGAGGCGCTGGGCGACAAGAACGGCTCGAGCAAGTCGGCCATCTCCAGCTACATCGAGGAGAAGTACGAGGG
CCTCCCCTCCGCGCACGCCTCCCTCCTCACGGCCAACCTCGCCAGCATGAAGGAGGCCGGCAAGCTCGCCTTCGTCAAGA
ACAACTACCTCAAGGCCGACGCTCCCTCCGCCACCCCGGCAAAGCGCGGCCGCGGCCGCCCGCCCAAGGACCCCAACGCG
CCGCCCAAGCCCAAGGCGGCGCCCAAGGACCCCAACACGCCCAAGCGCGGCCGGGGCCGCCCGCCCAAGGTCAAGGACCC
CATGGCCGACGCCGTCAAGGAGGCCGTCGCCAAGGCCACCACCGGCATGCCCCGGGGCCGCGGCCGCCCGCCGGGTCCCT
CCTCGGCCAAGAAGGTCAAGGTCGCCACGGAGGCCGCCTCTCCGGCCCCCGGGTCCGGCTCCGCTCCTGCCAAGCGTGGC
CGTGGGCGCCCACGCAAGGTGGCGGTGTGA--------------------------------------------------
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>chr5A_1_TraesCS5A01G204700
AAATTGGACCGGGAATGAGTCGCCATGCGGACACCAAACGGACGCGCGTCCGTTTGAGTCGGCGCGTTGGACCGCCTTTT
ATGTCCGCGCCGACCTGAACAGATACCAGCAGATGAAATGGGTCGCCCCATTAAAATTGCTCTAAATGTCGTCTCTCACT
AAACGCACGCCGGAATGCAAAAAAATATCCAGAAAAATACGAACACCGGCCAGGGTAGGACTCTGATGAACAGGTCACTG
CGTTGAAATCTGTGCGTGGCCGTAGGCTTACGAGGCACCATTCGGTAAAAAAGTGGATCAGACCCGCGGAGGCCCGAGCC
CGACAAAGGGCCGAATTCTATATCTGTAAAATAAAAAAAAAATACTGTATCCTGTATTGTTTATATGGACAGCCCGCCCG
TAGGGGGGCAGGACGGTCATTT-CCCGGACCCAAAACGCGAGGCCGCTCCCGCTCCCGCTCCCCGCGCAGGAGACGACAA
GTCCAGCAAAAGCGTTTCAGGAGCGTTCCCTCGCCCCGCCCCC-GACCCCCCGCCACGTCACCGATCCGCGTGCACACAC
CCGTTGCTTCTCCCCTCTCCGCCCTCGGATCCCCCACCTCGCCATCCCCGCCGTCCGTGCACGTCACGCACGAGTCTCCG
TCCACCGCACATCGATAAAGGCGTTCAAAATAGGAAAGCTGCATTTATATCGGCTGGAACTGCA-GATTCGTCTGACACG
CTCCGGGTGCCCCACCGCCAGGTGGTCCCGGGCCCTGGACACTAACCTACGCGGCCCACACGTCGGTGACCGCGCGCGGA
AACCCTAGGTCATAGGCCTGCTGCCTCTGGCACACGCGGCACAGCTCGCCCATTTCTTATCTACTGCCCCCGCCTTTCTC
GCCTCCTCCCCCGATCCAAATCCGAAAATTTTCCCCTCCCCGCAGCCCGCTCCCTCCTCAGCGCCCGCACTGTAGCCCGA
CCGCTCGGTTCCACCGCCGTGGGCTGTAGCCGCCGTCGCTGCCATGGCCAACGACGGGTCCCCCAAGTCCGGTGACATCC
CGCCCTACCCCGAGGTGAGTTTCTCCCAGTTTTGACGCTCTGCTTCAGTGCCTTCCGCCGTAGATTCGTCGGCGGCGCAT
CATTTCCATGTTTGGTACTAGATCCTTCTCCTTGCCGGCCGCGGCCTGAGCGCCTCTGCTTCTCCTCGCAGATGATTATC
GCGGCGATCGAGGCGCTGGGCGACAAGAACGGCTCGAGCAAGTCGGCCATCTCCAGCTACATCGAGGAGAAGTACGAGGG
CCTCCCCTCCGCGCACGCCTCCCTCCTCACGGCCAACCTCGCCAGCATGAAGGAGGCCGGCAAGCTCGCCTTCGTCAAGA
ACAACTACCTCAAGGCCGACGCTCCCTCCGCCACCCCGGCAAAGCGCGGCCGCGGCCGCCCGCCCAAGGACCCCAACGCG
CCGCCCAAGCCCAAGGCGGCGCCCAAGGACCCCAACACGCCCAAGCGCGGCCGGGGCCGCCCGCCCAAGGTCAAGGACCC
CATGGCCGACGCCGTCAAGGAGGCCGTCGCCAAGGCCACCACCGGCATGCCCCGGGGCCGCGGCCGCCCGCCGGGTCCCT
CCTCGGCCAAGAAGGTCAAGGTCGCCACGGAGGCCGCCTCTCCGGCCCCCGGGTCCGGCTCCGCTCCTGCCAAGCGTGGC
CGTGGGCGCCCACGCAAGGTGGCGGTGTGAGGCCTGCGTGCTGATGCCTTCCGGTCTGTGTATCTCGCTGTGGTTGCGAC
GGTGGTAAGCTCCTAGGTGTGACCGTGCTTCTTCGATTTGTGCTCCGTACTAATTGTTCCGTCGGCTTAGTTGCTCAGTA
TGTGCTGTAACCTAATCGAGATGAGTGTGCACAATGGATGGATGGATGTTTTTAGCTTCGGTTGTAGTAGTTGACTGTGC
TGCTGTGAGTGAACATGTTCAATTTTTTTTATGGCCATCTCTGTTGCTTCCGCATTATGATGAAGATGTTTGTCCTGTTG
TTGTGTACTTGGTTGCTGTCCGCCTGGCCTGTTCTTGATCGTGCGCTGCAGCTTGCATTGTCACTTAGTGTTGAATTGTG
CTTCCGTATGTCGGAGAAAGTTTGATTGTAGTGGTTGGACGTTGATGTTTACTGCTCTGTTCTGTTTAGTAAAATGTATA
ATATATAGCTCACTTCCAGGTATACATGCATCATACTAGCACATTTTTAGTTACATAACATATTATTTACAGATGCATCC
TAGACTCCTAGTAAAATGTAACATTTTTAGTTACATAACATATCATACTAGCACATTTTTAGTTACATAACATATTTACA
TAGCATGGTGGCTAGTCTGAATTTTGGTTTAGTCGGAGAT-A-AAAAATGCTTGTACTGGCCAGTGTTCTACTCTATAGA
AGATGGATAATAGTCTATTGTATAAACACTCGCCTATTAGGTATACGTGCTTCATGTTTAGCATTGTAGCAATCAGAATT
AACTGCCAATCTACTTCTGCATATAGGAATAGCGTTCATAACAGTTGTCGCTTTGGAATTATCTGATAATCTACTTTGCG
TATATAGCATAATTGCTCACCATGTTCCGTAGTACATCATACTTGGGATTGCACTGATCGTTGTAAGCTAATCTGGTTGC
AAGTTTGCATATAGCTGTCGATAGATGCGTCTGATGGTGAAATGTTGCAGTTGATAGTGCTTCTGATGTTGG
>chr5D_349
AAATA---------------------------------------------------------------------------
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----------------------------------AAAAAAAACACTGTACCC--TATTGTTTATATGGACAGCGCGCCCG
TCGGGGGTACCACA-GTCATTT-CCCCGACCCAAAACGCGAGGCCGCTCCCGCTCCCGCTCCCCGCGCAGGAGACGACAA
GTCCAGCAAAAGCGTTTCAGGATCGTTCCCTCGTCCCACC-CC-GACCCCCCGCCACGTCACCGATCCGCGTGCACACAC
CCGTTGCTTCTCCCCTCTCCGCCCTAGGATCCCCCGCCTCGCAATCCCCGCCGTCCGTGCACGTCACGCACGGGTCTCCG
TCCCACGCGCATCGATAAAGGCGTTCAAAATAGGAAAGCTGCATTTATATCGGCCGAAACTGCATGATTCGTCTGACACG
CTCCGGGTGTCCCACCGCCAGGTGGTCCCGGACCCAGGGTACTAACCTACGCGGCCCACACGTCGGTGACCGCACGCGGA
AACCCTAGGTCATAGGCCTGCTGCCTTCGGCACACGCGGCACAGCTCGCCCATTTCTTATCTACTGCCCCCGCCGTCCTC
GCCTCCTCCCCCGATCCAAATCCGAAATTTTTCCCCTCCCCGCAGCCCGCTCCCTCCTCCGCGCCCGCACTGTAGCCCGA
GCGCTCGGCTCCACCGCCGTGGGCTGTAGCCGCCGTCGCTGCCATGGCGAACGACGGGTCCCCCAAGTCCGGTGACATCC
CGCCCTACCCCGAGGTGAGTTTCTCCCGGTTTTGGCGCTCTGCTTCCGTGCCTTCCGCCGTAGATTTGTCGGCGGCGTAT
CATTTCCTTGTTCGT---TAGATCCTTCTCCTTGCCGGCCGCGGCCTGAGAGCCTCTGCTTCTCCTCGCAGATGATTCTC
GCGGCGATCGAGGCGCTGGGCGACAAGAACGGCTCGAGCAAGTCCGCCATCTCCAGCTACATCGAGGAGAAGTACGAGGG
CCTCCCCTCGGCGCACGCCTCCCTCCTCACGGCCAACCTCGCCAGCATGAAGGAGGCCGGCAAGCTCGCCTTCGTCAAGA
ACAACTACCTCAAGGCTGACGCTCCCTCCGCCACCCCGGCAAAGCGCGGCCGCGGCCGCCCGCCTAAGGACCCTAACGCG
CCGCCCAAGCCGAAGGCTGCGCCCAAGGACCCCAACACGCCCAAGCGCGGCCGGGGCCGCCCGCCCAAGGCTAAGGATCC
CATGGCCGACGCCGTCAAGGATGCCGTCGCCAAGGCGACCACCGGCATGCCCCGGGGCCGCGGCCGCCCGCCGGGTCCCT
CCTCGGCCAAGAAGGCCAAGGTCGCCAAGGAGGCTGCCTCTCCGGCTCCCGCGGACGGCTCCGCTCCTGCCAAGCGTGGC
CGTGGGCGCCCACGCAAGGTGGCGGTGTGAGGCCTGCGTGCTGATGCCTTTCGGTCTGTGTATCTCGCTGTGGTTGCGAC
GGTGGTAAGCTCCTAGGTGTGACCGTGCTTCTTCGATTTGTGCTCCGTACTAATTGTTCCGTCGGCTTAGTTGCTCAGTA
TGTGTTGTAACCTAATCGAGATGAGTGTGCACAATGGATGGATGGATGTTTTTAGCTTCGGTTGTAGT---TGACTGTGC
TGCTGTGAGTGAACATGTTCATTTTTTTT-ATCGCCATCTCTGTTGCTTCCGCATTATGATGAAGATGTTTGTCATGTTG
TTGTGTACTTGGTCGCTGTCCTCTTGGCCTGTTCTTGATCGTGCGCTGCAGCTTGCATTGTCACTTAGTGTTGAATTTTG
CTTCCGTATGTCGGAGAAAGTTTGATTGTAGTGGTTGGACGTTGATGTTTACTGCTCTGTTCTGTTTAGTAAAATGTATA
ATATATAGCTCACTTCCAGGTATACATGCATCATAT---CACATTTTTAGTTACATAACATATT---TGCAGATGCATCC
TAGTAG----------------------------------------------------------------------TACA
TAGCATGGTGGCTAGTCTGAATTTTGGTTTAGTCGGAGATAA-AAAAATGCTTG-ACTGGCCAGTGTTCTACTCTATATA
AGATGGATA-TAGTCTGTTGTATAAACAGTCTCACTATTAGGT--CGTGCTTCATGCTTAGCATTGTAGCAATTGGAATT
AACTGTCAATCTACTTCTGCATATAGGAGTAACGTTCATAAGAATTGTCGCTTTGGAATTATCTGGCAATCTACTTTGCC
TACATAGCATAATTGGTCACCATGTTTCGC---ACTTCATACTTGGGATTGCACTGATCGTTGCAAGCTAAGTTGGTTAC
AAGTTTGCATATAGCTGTCGATAGATGCATCTAATGGTGAAATGTTGCAGTTGATAGTGCTTCTGATGTTGG
>chr5B_374
G-------------------------------------------------------------------------------
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------------------------------------------------------TATTATTTATATGGACAGCGCGCCCG
TAGGGGGGCATGACGGTCATTTCCCCGGACACAAAACACGAGGCCGCTCCCGCTCCCGCTCCCCGCGCAGGAGACGACAA
GTCTAGCGAAAGCGTTTCAGGAGCGTTCCTTCGCCCCACC-CCAGACCCCCCGCCACGTCACCGATCCGCGTGCACACAC
CCGTTGCATCTCCCCTCTCCGCCCTCGGATCCCCCACCTCGCCATCCCCGCCGTCCGTGCACGTCACGCACGGGTCTCCG
TCCCCCGCACATCGATAAAGGCGTTCAAAATAGGAAAGCTGCATTTATATCGGCCGAAACTGCATGATTCGTCTGACACG
CTCCGGGTGCCCCACCGCCAGGTGGTCCCGGGCCCAGGGTACTAACCTAAGCGTCCCACACGTCGGTGACTGCGCGTGGA
AACCCTAGGTCATAGGCCTGCTGCCTTTGGCATACGCGGCACAGCTCGCCCATTTCTTATCTACTGCCCCCGCCGTCCTC
GCCTCCTCCCCCGGTCCAAATCCGAAAATTTTCCCCTTCCCGCAGCCCGTCCCCTCCTCCGCGCCCGCACTGTAGCTCGA
GCGCTCGGCTCCACCGCCGTGGCCTGTAGCCGCCGCCGCTGCCATGGCGAACGGCGGGTCCCCCAAGTCCGGTGACATCC
CGCCCTACCCCGAGGTGAGTTTCTCCCAGTTTTGGCGCTCTGCTTCCGTGCCTTCCGCCGTAGATTCGTCGGCGGCGTAT
CATTTCCTTGTTTGG---TAGATCCTTCTCCTTGCCGGTCGCGGCCTGAGCGCCTCTCCTTCTCCTCGCAGATGATTCTC
GCGGCGATCGAGGCGCTGGGCGACAAGAACGGCTCGAGCAAGTCGGCCATCTCCAGCTACATCGAGGAGAAGTACGAGGG
CCTTCCCTCCGCGCACGCCTCCCTCCTCACGGCCAACCTCGCCAGCATGAAGGAGGCCGGCAAGCTCGCCTTCGCCAAGA
ACAACTACCTCAAGGCCGATGCTCCCTCCGCCACCCCGGCAAAGCGCGGCCGTGGCCGCCCGCCCAAGGACCCCAACGCG
CCGCCCAAGCCCAAGGCGGCGCCCAAGGACCCCAACACGCCCAAGCGCGGTCGGGGCCGCCCGCCCAAGGCTAAGGACTC
CATGGCCGACGCCGTCAAGGAGGCCGTCGCCAAGGCCACCACCGGCATGCCCCGCGGCCGCGGCCGCCCGCCGGGTCCCT
CCTCGGCCAAGAAGGCCAAGGTCACCACGGAGGCTGCCTCTCCGGCTCCCGCGTCCGGCTCCGCTCCTGCCAAGCGTGGC
CGTGGGCGCCCACGCAAGGTGGCGGCTTGAGGCCTGCGTG-TGATGCCTTTCGGTCTGTGGATCTCGCTGTGGTTGCGAC
GGTGGTAAGCTCCTAGGTGTGACCGTGCTTCTTCGATTTGTGCTCTGTACTAATTGTTCCGTCGGCTTAGTTGCTCAGTA
TGTGTTGTAACCTAATCGAGATGAGTGTGCACAATGGATGGATGGATGTTTTTAGCTTCGGTTGTAGT---TGACTGTGC
TGCTGTGAGTGAACATGTTCATTTTTTTT-ATCGCCATCTCTGTTGCTTCCGCATTATGATGAAGATGTTTGTCCTGTTG
TTGTGTACTTGGTCGCTGTCCTCTTGACCTGTTCTTGATCGTGCGCTGCAGCTTGCATTGTCACTTAGTGTTGAATTGTG
CTTCAGTATGTCGGAGAAAGTTTGATTGTAGTGGTTGGACGTTGATGTTTACTGCTCTGTTCTGTTTAGTAAAATATATA
ATATATAGCTCACTTCCAGGTATACATGCATCATA---GCACATTTTTAGTTACATACCATATT---TAGAGATTCAT--
---TAG----------------------------------------------------------------------TACA
TAGCATGGTGGCTAGTCTGAATTTTGGTTTAGTCAGAGATAATAAAAATGCTTGTACTGGCCAGTGTTCTACTCTATATA
AGATGGATA-TAGTCTATTGTATAAACACTCTCACTATTAGGT--CGTGCTTCATGCTTAGCATTGTAGCAATTGGAGTT
AACTGTCAATCTACTTCTGCATATAGGAATAACGTTCATAACAATTGTCGCTTTGGAATTATCTGACAATCTACTTTGCC
TATATAGCATAACTATCCACCATGTTTCGTACTTCG---TAGTTGGGATTGCACTGATCGTTGCAAGCTAATCTGGTTAC
AAGTTTGCATATAGCTGTTGATAGATGCATCTGATGGTGAAATGTTGCAGTTGATAGTGCTTCTGATGTTGG
>chr4B_1705
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---------------------------TGGGGCCTGCGTG-TGATGCCTTTCGGTCTGTGGATCTCGCTGTGGTTGCGAC
GGTGGTAAGCTCCTAGGTGTGACCATGCTTCTTCGATTTGTGCTCTGTACTAATTGTCCCGTCGGCTTAGTTTCTCAGTA
TGTGTTGTAACCTAATTGAGATGAGTGTGCA-AATGGATGGATGGATGTTTTTAGCTTCGGTTGTAGT---TGATTGTGC
TGCTGTGAGTGAACATGTTCATTTTTT---ATCGCCATCTCTGTTGATTCCGCATTATGATGAAGATGTTTGTCCTGTTG
TTATGTACTTGGTCGCTGTCATCTTGACCTGTTCTTGATCGTGCGCTGCAGCTTGCATTGTCACTTAGTGTTGAATTGTG
CTTCAGTATGTCCGAGAAAGTTTGATTGTAGTGGTTGGACGTTGATGCTTACTGCTCTGTTCCGTTTAGTAAAATGTATA
ATATATAGCTCACTTCCAGGTATACATGCATCATA---GCACATTTATAGTTACATAACATATT---TACAGATGCATC-
----AG----------------------------------------------------------------------TACA
TAGCATGGTGGCTAGTCTGAATTTTGGTTTAGTCAGAG------------------------------------------
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>chr4B_1708
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------------------------------GGCCTGCGTG-TGATGTCTTTTGGTGTGTGGATCTCGCTGTGGTTGCGAC
GGTGGTAAGCTCGTAGGTGTGACCATGCTTCTTCGATTTGTGCTCTATACTAATTGTTCCGTCGACTTAGTTGCTCAGTA
TGCATTGTAACCTAATCGAGATGAGTGTGCACAATGGATGGATGGATGTTTTTAGCTTCGGTTGTAGT---TGACTGTGC
TGTTGTGAGTGAACATGTTCATTTTTTT--ATCGCCATCTCTGTTGCTTCCGCATTATGATGAAGATGTTTGTCCTGTTG
TTATGTACTTGGTCACTGTCCTCTTGACCTGTTCTTAATCGTGCGCTGCAGCTTGCATTGTCACTTAGTGTTGAATTGTG
CTTCAGTATGTCGGAGAAAGTTTGATTGTAGTTGTTGGATGTTGATGTTTACTGCTATGTTCTGTTTAGTAAAATGTATA
ATATATAGCTCACTTCCAGGTATACACGCATTATA---GCACATTTTTAGTTACATAACATATT---TACAGATGCATCA
A---------------------------------------------------------------------------TACA
TAGCATGGTGGCTAGTCTGAATTTTGGTTTAGTCAGAGCTAAA-------------------------------------
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>chr2B_1708
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------------------------------GGCCTGCGTG-TGATGCCTTTCGGTCTGTGGATCTTA-TGTGGATGCGAC
GATGGTAAACTCCTAGGTGTGACCGTGCTTCTTTGATTTGTGCTCTGTACTAATTATTCCGTCGGCTTAGTTTCTCAGTA
TGTGTTGTAACCTAATCGAGATGAGTGTGCACAATGGATGGATGGATGTTTTTAGCTTTGGTTGTAGT---TGACTGTGC
TGCTGTGAGTGAACATGTTCATTTTTTT--ATCGCCATCTCTATTGCTTCCGCATTATGATGAAGATGTTTGTCCTATTG
TTATGTACTTGGTCGCTGTCCTCTTGACCTGTTCTTGATCGTGCGCTGTAGCTTGCATTGTCCCTTAGTGTTGAATCGTG
CTTCAGTATGTCGGAGAAAGTTT-ATTGTAGTGGTTGGACGTTGATGTTTACTTCTCTATTCCGTTTAGTAAAATGTATA
ATATATAGCTCACTTCCAGGTATACATGCATCATA---GCACATTTTTAGTTACATAACATATT---TACAGATGCATC-
----AG----------------------------------------------------------------------TACA
TAGCATGGTGGCTAGTCTGAATTTTGGTTTAGTCAGA-------------------------------------------
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------------------------------------------------------------------------
>SNPs
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S------S--SS-------------------S------
----------S---------------------------------------------------------------------
-------------------------------------S--S---------------------------------------
------------------------------------------------------------------------S-------
---S--------------------------------------------------S-S-----------------------
-----------------------------------S--SS----------------------------------------
--------------------------S-----------------------------------------------S-S---
-----------------------------------------------------------S--------------------
S-------S---------------------------------------S-------------------------------
----------------------------------S-----------S------------------------------S--
-------S-------SSS-----------------------------------------------------------S--
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----------------------------------------------------------------------SS--------
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---------------S------------------S-----------S----S----------------------------
--------------------------------------------------S-----------------------------
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----S---------------------------------------------------------------SSS---------
---------------------S-------S--S-----------------------------------------------
-------------S-------S-S--------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------SSS--------------------------SSS-------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
------------------------------------------------------------------------------S-
---------S---------------------S-SSSS-SS-SSSS-----------S----------------SS-----
-----S-------------------------S-----------S----------------------S------------S
---------------S----------S----S---S---------------------------S--------------S-
----------------------------S-------------------------------------------
>forward_258
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------------------------------------------------------------------------------TG
CGTTGAAATCTGTGCGTG--------------------------------------------------------------
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>reverse_1909
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--------------------------------------------------------------------AGTTGACTGTGC
TGCTGTGA------------------------------------------------------------------------
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------------------------------------------------------------------------
