>input_sequence_71174
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-----------------------------------------------CGAGAGAGCCAAGGAAGACACA--ACAGCTCAA
GGCAAACACCGAGCCATCTCAAAGTGGTTAGCAGTAGCACCCGTACGCACGGAAGGGACGAGCCATGGCGTCTGGGGCGG
TGAGACCTAAGCTCGCGTACATCGTGTGTTACGTCGAAGATGTGGGCAAGTCGGCCGCCTTCTACGCCAAGGCCTTCAAC
TACAGCGTCCGCCGGGTCGACGACTCGCACAAGTAATCCCCATCACCATTTGCGCCTAGGCCTACC-T-AGCTGGCCGCG
GGGTCAACCTGACATGTCTGTGCATCGTCTGTTGTGCGCGCAGGTGGGCGGAGCTGGACACCGGCTCGACGACCATCGCG
TTCACGCCGCGGCACCAGAGGGAGACGGACGCGCTCACGGGCGAGGTGCAGCTGCCCAAGTCGCTCCGTGAGCGAGGGCC
CGTGGAGATCTGCTTCGACTACGACGACGTCGACGCTGCGTACCGGCGGGCCGTGGAGAACGGGGCGGTGCCGGTGAGCG
CGCCGGAGCAGAAGAACTGGGGGCAGAAGGTCGGCTACATCAGGGACTGTGACGGGATCACCCTGCGCCTTGGGAGCCAC
GTCCGCGAGTAGTGGCATACTTGCTCGTGTCTACTGTAATGTATTGTGCTCGTGTCTACTGTAATGACTCGTAATGCTGT
ACTCTGTCGATACCAAATAATAAATCGCGATGTCCAGC------------------------------------------
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>chr4A_1_TraesCS4A01G098700
GTTCTGTTTTTTCAGCTGGTTTTTTTTTTGAAAAAAAATCGTTAAAACCTATTAACATAGATCTAGTTTTGAGAATCTCA
ACGTAAGAAATTCAACAGTAAAAGCGGTTTAAGATTTAGACTCACGGTTTGAGAGACAATGTTTTAAATAAACGGATCTA
TATAAAAAAGGAAGACTCCCGGATGACAGACAAATGACGTCGCAACTTAGGAAGTTGAAGTGATCTTTGCAACGAGCACT
TCTCAATTAGTGATTTCGAGATAAAGGAGAGTCGCCTTGGAATTCAATCTTTTTTCTTTTTATTCTGATCTCGTAATCTT
ATTCCACTCCTTGGAAGTTACTCTACATACTACGAGTACATCACAGTTTATGCTTCAATACAAATGCTGCGCAAAGCACG
CCATGTAACAACTAGCTTAGCGGTTAGCCTCCGCCGGTGCCTGTGACGCCCAGGTCGGGCTTGCCGTCGTCCGTACCGGC
GCCGAACACCGGGCCGCCCTTCCCAGTGGCGTCTTCGACCCTCTCCTCGAGCATCTTCACCGGTAACCCATGCTCGTCCT
TGCTCGACCGTAGCTCTGTCCTTGGCGACTGCTGCTGCTGGTGGCGCTCCTCCGGGCCGTCGGGAGCTGCCGCCGACCTG
TACGTGGTCGCCGTGAAAGCTCCCTTGGGCTGTGCGCCTTGGGCTCCAGACATGGCGATCCGATGGTGCTGGGCTG----
--TGGGTTGGACTTTGGCGTTC-GTCTTCGAGTTGGCTCCCGGCTTCTTAAACTAGGACGTGTTCCGTGGCTACGTGTCA
GTGCCACCTACAGAGAATTCGGTCTGAGGAGCCGCTGAACCTTCCACAGTCCACGCGTGTCACCGAGAAGAAGGGCACGA
TCTGAAACGTGGAGAGAAGAGTCCAGAACACTGCATGCATGCGCGCCACCTCCCAAGCTGCCGACGGAGCGGCGATTCCG
GGCCGCATTAAAAGGCAAACCACAGGCGAGAGCTGAGCGCCAGTAATCGAGAGAGCCAAGGAAGACACA--ACAGCTCAA
GGCAAACACCGAGCCATCTCAAAGTGGTTAGCAGTAGCACCCGTACGCACGGAAGGGACGAGCCATGGCGTCTGGGGCGG
TGAGACCTAAGCTCGCGTACATCGTGTGTTACGTCGAAGATGTGGGCAAGTCGGCCGCCTTCTACGCCAAGGCCTTCAAC
TACAGCGTCCGCCGGGTCGACGACTCGCACAAGTAATCCCCATCACCATTTGCGCCTAGGCCTACC-T-AGCTGGCCGCG
GGGTCAACCTGACATGTCTGTGCATCGTCTGTTGTGCGCGCAGGTGGGCGGAGCTGGACACCGGCTCGACGACCATCGCG
TTCACGCCGCGGCACCAGAGGGAGACGGACGCGCTCACGGGCGAGGTGCAGCTGCCCAAGTCGCTCCGTGAGCGAGGGCC
CGTGGAGATCTGCTTCGACTACGACGACGTCGACGCTGCGTACCGGCGGGCCGTGGAGAACGGGGCGGTGCCGGTGAGCG
CGCCGGAGCAGAAGAACTGGGGGCAGAAGGTCGGCTACATCAGGGACTGTGACGGGATCACCCTGCGCCTTGGGAGCCAC
GTCCGCGAGTAGTGGCATACTTGCTCGTGTCTACTGTAATGTATTGTGCTCGTGTCTACTGTAATGACTCGTAATGCTGT
ACTCTGTCGATACCAAATAATAAATCGCGATGTCCAGCGACAGCAAGTTATCTAATGTTTCCACGCACCGCCGCCGGCAA
AAATACGT-----AGAAGTTACTCAGCCTAGTCGGTTGGTCTTGTCGGTTGCTCTGCAGTAGTGCAGTCCACACTCCGCA
GCCGTTCACTGTGCCCTTTGACTAAGAAGAGGTTTCAGAACAGACATCGTCAGTGGGCCTAAATAGAAATTTCCTCTTTG
ACATAAGAAAAACAAAACAATTACTCTGGCGGCATTACATTCCGCAAATGTTTAGCACCCGCAGTCGGCCAAATAGAAAC
TTCCTATTTCGCAAATGTTTAGCGCCCGCAGTCGGTCAAATAAAAACTTCCTCTTTGATGCATGGCATGATAGTCGCCAC
CGGCATCGCATCGCTTTGCTCCTGAAGACACCAGCATTTCTTTCGCTTTGCTCCTGAAGACACCAGCATTTCTTTCATTC
TAGATTTCTCATTACTAAACAGTATAACTCAGCTAGCTATGAGCCCCCACAATGTCAAAAGTCATTGAATTACTCTCATC
TACGCACAAGATTTTTCCGGCTATCCTAGTTATAACGCTGACTGCTGAAAGGCACCTTTTCATTTCAGATTTTTCATTAC
TAAACAGTATAACTCAGCTAGTTATGAGCCCCCACAGTGTTTTAACGCTCTCAGCCGTTGAATTACTCTCATCTACGCAC
AAGATTTTCCCGGCCGTTCCAATTATAACGCTGACTGCTGAAAGGCACCTTTTCTGGGTTGCTGCTTCGGAAAACGAGTT
ACACTAATTGTCACTAATCAGGCTGTTTTGTAAAAGGCCCATGAGGTACCTCTAACAGGGCGGGTCTCCAAACCTATCCT
CGAGCTGCTCGCCTCCTCCTCGGCGTTGGGCCGCCGCCGCCTTCCATCCAGGCGGGGTGGTGCTACTTCTTGTCTGGAGC
CGCCGCCGTCTTCCGTCCCGGCAGAGATCTTCTACCTCTTGTTTGCCTCGGTGTGGATGCCATGTACTCGCCCTCTACTC
TTC
>chr4B_259
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------------------AGATAAAGGAGAGTCGCCTTGGAATTCAATCTTTTTTCTTTTTATTCTGATCTGGTTATCTT
ATTCCACTCCTTGGAAGTTACTCTACATACTACGAGTACATCACAGTTTATGCTTCAATACATGTGCTGCGCAAAGCACG
CCATGTAACAACTAGCTTAGCAGTTAGCCTCCGCCGGTGCCTGTGACGCCCAGGTCGGGCTTGCCGTCCTCCGCGCCGGC
ACCGAACACCGGGCCACCCTTCCCAGTGGCGTCTTCGACCTTCTCCTCGAGCATCTTCACCGGCAACCCATGCTCGTCCT
TGCTCGACCGTAGCTCTGTCCTTGGCGACTGCTGCTGCTGGCA---CTCCTCCGCGCCGTCGGGAGCTGCCGCCGACCTG
TACGTGGTCGCCGTGAAAGCTCCCTTGGGCTGTGCGCCTTGGGCTCCAGACATGGCAACTTGATGGTGCTGGGCTG----
--TGGGTTGGACTTTGGCGTTC-GTCTTCGAGTTGGCACCCGGCTTCTTAAACTAGGACGTGGTCTGTGGCTACGTGTCA
GTGCCACCTACTGAGAATTCGGTCTGAGGAGCCGCTGAACCTTCCACAGTCCACGCGTGTCACTGAGAAGAAGGGCTCGA
TCTGAAACGTGGAGGGAAGAGTCCAGAATAGTGCATGCATGCGCGCCACCTCCCAAGCTGCCGACGGAGCGGCGATTCCG
GGCCGCATTAAAAGGCAAACCATAGGCGAGAGCTGAGCGCCGGTAATCGAGAGAGGCAAGGAAGGCACA--ACAGCTCAA
GGCAAACACCGCGCCATCTCAAAGTGGTCAGCAGTAGCACCCGTACGCACGGAAGGGACGAGCCATGGCGTCTGGGGCGG
TGAGACCTAAGCTCGCGTACATCGTCTGTTACGTCGACGACGTGGTCAAGGCGGCCGCCTTCTACGCCGACGCTTTCGGC
TACAGCGTCCGCCGCGTCGACGACTCGCACAAGTAATCCCCATCACCATTTGCACCTAGGCCTACCCTTAGCTGCCTGCC
GGGCCAGCCTGACATGTCTGTGCATCGTCTGTTCTGCGCGCAGGTGGGCGGAGCTGGACACCGGCTCGACGACCATCGCG
TTCACGCCGCGGCACCAGAGGGAGACGGACGCGCTCACGGGCGAGGTGCAGCTGCCCAAGTCGCCCCGTGAGCGAGGGCC
CGTGGAGATCTGCTTCGACTACGACGATGTCGACGCCGCGTACCGGCGGGCCGTGGAGAACGGGGCGGTGCCGGTAAGCG
CGCCGGAGCAGAAGAACTGGGGGCAGAAGGTCGGCTACGTCAGGGATTTTGACGGGATCACCGTGCGCCTTGGGAGCCAC
GTCCGCGAGTAGTGGCATCCTTGCTCG-------------------------TGTCTACTGTAATGACTAGTAATGCTGT
ACTCTGTCGATAGCAAATAATAAATCGCCATGTCCAGTGACAGCAAGGTATCTAATGTTTCCACGCACCGCCGCCGGCAA
AAATACGTACAGTACAAGTTACTCAGCCTAGTCGATTGGTCTTGTTGGTTGCTCTGCAGTAGTGCAGTCTACACTCTGCA
GCCGTTCGCTGTTCCC----------------------------------------------------------------
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>chr4D_259
AGATAA--------------------------------------------------------------------------
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-----------------------AAGGAGAGTCGCCTTGGAATTCAATCCTTTTTCTTTTTATTCTGGTCTGGGTATCTT
ATTCCACTCCTTGGAAGTTAC-----ATACTACGAGTACATCACAGTTTATGCTTCAATACATGTGCTGCGCAAAGCACG
CCATGTAACAACTAGCTTAGCAGTTAGCCTCCGCCGGTGCCTGTGACGCCCAGGTCCGGCTTGCCGTCCTCCGCGCCGGC
GCCGAACACCGGGCCGCCCTTCCCAGAGGCGTCCTCGACCTTCTCCTCGAGCATCTTCACCGGTAACCCATGCTCGTCCT
TGCTCGAGCGTAGCTCTGTCCTTGGCGACTGCTGCTGCTGGCA---CTCCTCCGCGCCGTCGGGAGCTGCCGCCGACCTG
TACGTGGTCGCCGTGAAAGCTCCCTTGGGCTGTGCGCCTTGGGCTCCAGACATGGCAATTTGATGGTGCTGGGCTGTGGG
TCTGGGTTGGACTTTGGCGTTCCGTCTTAGAGCTGGCACCCGGCTTCTTAAACTAGGACGTGATCTGTGGCTACGTGTCA
GTGCCACCTACTGAGAATTCGGTCTGAGGAGCCGCTGAACCTTCCACAGTCCACGCGTGTCACCGAGAAGAA-GGCACGA
TCTGAAACGTGGAGAGAAGAGTCCAGAATACTGCATGCATGCGCGCCACCTCCCAAGCTGCCGACGGCGCGGCGATTCCG
GGCCGCATTAAAAGGCAAACCACAGGCGAGAGCTGAGCGCCAGTAATCGAGAGAGCCAAGGAAGACGCAACACGGCTTAA
GGCAAACACCGAGCCATCTCAAAGTGGTTAGCAGTAGCACCCGTACCCACGGAAGGGACGAGCCATGGCGTCTGGGGCGG
TGAGACCTAAGCTCGCGTACATCGTGTGTTACGTCAAAGACGTGCCCAAGTCGGCCGCCTTCTACGCCGACGCCTTCGGC
TACAGCGTCCGCCGCGTCGACGACTCTCACAAGTAATCCCCATCACCATTTGCGCCTAGGCCTACC-TTAGCTGCCTGCC
GGGCCAGCTTGACATGTGTGTGTATCGTCTGTTCTGCGCGCAGGTGGGCGGAGCTGGACACCGGCTCGACGACCATCGCG
TTCACGCCGCTGCACCAGAGGGAGACGGACGCACTCACGGGCGAGGTGCAGCTGCCCAAGTCGCCCCGCGAGCGAGGGCC
CGTGGAGATCTGCTTCGACTACGACGACGTCGACGCCGCGTACCGGCGGGCCGTGGAGAACGGGGCGGTGCCGGTGAGCG
CGCCGGAGCAGAAAAACTGGGGGCAGAAGGTCGGCTACGTCAGGGACTGTGACGGGATCACCGTGCGCCTTGGGAGCCAC
GTCCGCGAGTAGTGGCATCCTTGCTCGTGTC---------------------TGTCTACTGTAATGACTAGTAATGCTA-
---CTGTCGATAGCAAATAATAAATCGCCGTGTCCAGTGACAGCAAGTTATCTAATGTTTCCACGCACCGCCGCCGGCAA
AAATACGT-----ACAAGTTACCCAGCCTAGTCGGTTGGTCTTGTTGGTTGCTCTGCAGTAGTGCAGTCTACACTCTGCA
GCCGTTCGCTGTGCCCTTTGA-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-----------------------------------------------------S--S-----
--------------------------------------------------------------SS----------------
---------------------S----------------------------------------------S----SS-----
----------------------------------------S---------------------------------------
-----------------------------------------SSSSS--------S-------------------------
--------------------------------------------------------S--SS-------------------
-------------------------------------S------------------------S--S--------------
-----------S--------------------------------------------------------------------
----------------------------S---------------------------------------------------
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----------------------------------------S----S----------------------S-S------SS-
--------------S-----------------------------------------------------------S-S--S
---S--S--------------------------S----------------------------------------------
----------------------------------------------------------------S---------------
------------------------------------S-------------------------------------------
--------------------------------------S-----------------------S-----------------
------------------S------------SSSSSSSSSSSSSSSSSSSSS-----------------S----------
------------S---------------S--------S------------------------------------------
--------------S------------------------------S-----------------------S------S---
-------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_192
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------------AGACTCCCGGATGACAGACA------------------------------------------------
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>reverse_2098
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-----------------GCTCCTGAAGACACCAGCAT-------------------------------------------
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