>input_sequence_71168
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--------------------------------------------------------------------ATCAGTCAAGTT
CAGAGTAAGCTCGAAGTCCATTTAGCTGGTTAGTAGTGTTGGGTATATATTCCATATTCCATATTTCCATTTCCATATGC
TTTCTGCCAATAAGTTTCTCTATATGCATCATCCTCATACAGAGGCCGGGGTTATCCTTCTTTTCGAAAAAAGATATATG
ACTATCATTAGCATTGTTTTGATCTGTAGTCTGAACCAA-AAAGGAAAGAAGATTTGATGAACTATTTGGGCCAACTGTT
ATTGTGATTTGTAGTCTGAACTGTACTATTTTGATCAATTGTTTGCAGCTCACCGAATCAAGGATGAGCTGCGCCGCCCC
AAAAGCCCCCGCCGGAGAGGAGAAGAAGACGTCATGGCCGGAGGTAGTGGGAAAGTCCATCGAGGAGGCCAAGGAGATCA
TCCTTAAGGACATGCCTAACGCCGACATCGATGTCCTTCCTGCTGGCTCGGCGATGACCCTCGACTTCAGGACCAACCGT
GTCCGCATCATCGTTGACACTGTCGCGACCACCCCTTCCATTGGTTAGCAAGCTTTGCGAGCGAGATACAAAATGGATGC
ACTTATGCATTCTGATGAATAAGTAGTTTCAATAATCATGGATGAATAAATACACGCAGATCAATGGCGTGTGTCGATGT
ACTTATGGTTCAATGGACTTGACCAGTTATTTTTAATTTATGAGATCTCGGCTTGC------------------------
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-----------------------------------------------------------------------
>chr1D_1_TraesCS1D01G027900
CAGCAATGCTTGATCTACGTTATACTACCTCCATAGACGT----------------------------------------
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--------------------------------------------------------------------------TGGGGC
AGTTTAAATTAAATTGTCTCAAAGTCTTATATTTAGGAATGGAAGAAGTATAATTTACGTGTTTAACGCGCAGTCCTACC
AGGGGGTAGGATTGGATGACTTAGGGGAGGAAGGGGCCCACCCTCCTAATATTCGGGGAGGGGGGTGATAATTAATTGTG
AGCATTATGTAGAGTTTTTGTCAAACATACCTAGATGTAGGTTTTTTTTATTCACCAGCTCCCCTCGGCCAATCTGGAAC
GGAGGTAATACAAAACAAGTCCGACCACCAGCTCCCCCNNNNNNNNNNNNNNN---------------------------
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----------------------AATGGCCCATGTTTAATTTTTTATTTTTGCAACTTAGGAGCTGCTTTTATGGTAGTCA
TCCCCGCTTATCTGCGTTTTGAGTTACTCCC-TTGTCCGGTTTTCTTATGCCCCATTGCAATTATTGTCAAACTTTGACC
ATAAAATGAACTAATAAAATATAAACTATATGTGACAAAACTATATTGTGTGAATTCTCTTTTGAATGCAAATA--CAAT
TCTGTAATTTTTGTATTATATAAATAATACGATGTGACTGAGTTATATAAATGAGCAACATTTGATACAAAATACTAGTA
GGG---CTAATAAACCTTGACGAGGGAGTATCCAAGTAGCCGA---------------GCAACACGTTCATCCACCCTTG
AATCACGTGGTACGTTGTTGTCTTCTTTAGCAGCCCAACGTGTTGTCCACTACGAAATCAAGTGTGGCCAATTTAGGAGC
CACCTCGTGTACCACGCACGCTGCATGCATGCATGTG-CGACATTATCTTCTCTGCATATGCGGCTAGTTAGCACAAGCA
AACAATTTCTCGTGCTCCACGCGTGCATGTGTGAGAGCATCTTATCTTCTCTCCTGCTTGTCTCATGCATGTGAGAGCAT
C-TAT-CTCATCTTCTGTCGTGATAAATCTTCCCTATAAATAGGGC-AAGTGTTATGCAAATACTCATATCAGTCAAGTT
CAGAGTAAGCTCGAAGTCCATTTAGCTGGTTAGTAGTGTTGGGTATATATTCCATATTCCATATTTCCATTTCCATATGC
TTTCTGCCAATAAGTTTCTCTATATGCATCATCCTCATACAGAGGCCGGGGTTATCCTTCTTTTCGAAAAAAGATATATG
ACTATCATTAGCATTGTTTTGATCTGTAGTCTGAACCAA-AAAGGAAAGAAGATTTGATGAACTATTTGGGCCAACTGTT
ATTGTGATTTGTAGTCTGAACTGTACTATTTTGATCAATTGTTTGCAGCTCACCGAATCAAGGATGAGCTGCGCCGCCCC
AAAAGCCCCCGCCGGAGAGGAGAAGAAGACGTCATGGCCGGAGGTAGTGGGAAAGTCCATCGAGGAGGCCAAGGAGATCA
TCCTTAAGGACATGCCTAACGCCGACATCGATGTCCTTCCTGCTGGCTCGGCGATGACCCTCGACTTCAGGACCAACCGT
GTCCGCATCATCGTTGACACTGTCGCGACCACCCCTTCCATTGGTTAGCAAGCTTTGCGAGCGAGATACAAAATGGATGC
ACTTATGCATTCTGATGAATAAGTAGTTTCAATAATCATGGATGAATAAATACACGCAGATCAATGGCGTGTGTCGATGT
ACTTATGGTTCAATGGACTTGACCAGTTATTTTTAATTTATGAGATCTCGGCTTGCTGTTCATGTGTTTACTAAAATGCT
CATGAAATATGCAT-ACTATGGGCATGTTGCTGGATTATTTCAACAACTTAGACCTAATGGTGTCATTAGAATGAAATAT
ACTAATCACACCTTAATCAACTTAGAGAAGAACTCGAGCCCCATGAGATATCTTAAATGGATTCTTTTGTGCTTTGGACA
AACTTCTGAGATGAGAATTAGTTTTAGTGTGACCCCGTGCCTTTTCAACATTATTGTTGATGAGGCTTAACCTTTTGCTC
AAACCCTTTGCCGACATATAAGAAA----CATG----ATATACACATCTTTT-TTTTCTTTGAGAAATGCATGAGATAAG
TGTGCCCATATATTAAGATAGGAAGTAAGAATCATATACAAATAACCACCACATAAACGGCAGCCCAAACTTCCCATTCC
GTCATCGCAACACTAAGTAACTA--CTCGCTTAAGACTATCTTTCCCCACCTTCCGTGACTCAAGGCAAT----GCTGGT
GAATTTTATCAACTACTGATGTATGAAGCAGAGAGGTGTTCTTG----AACACCCTTGTGCTTCTCTCAAGCACATGCAT
CATAGCGAGCAGAGGATCAACCAGCTGACATCATTTCTCAGCTTGGGAGGGATGCCTTGCTGAAGAGCAGACCACCAGGT
GA-------------------GGACGTCGCCGGTAGCACTCGACGTCTGGTTCGGCAGGAAGATC---------------
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-------------------------------------------------------------------------CATCTCA
GGATGTGAGACCAGACCTCACGCGCAAGCACACGAAGCATCATTTGGTGCTCGGTCGTTTCCTTACGTACACCGTACACA
TCTCTC---TTTTTTGGATATTTTCTTGGTAGTGAATTAGTGATTAAACTTTTTAGGGGAAAGGTATTTC--TGTCCAGA
ATT-GCTGATTAAAATTGAGCTGTGAACTTGGGATTGCTCGGAAGTTACATGCATGGCATTGAGATATGCACAAATTTAA
TTATGCTTGTCTTAATCTACCCTGGATGGAACTTCCCAGTTTGGC--ACATACACATACATGAATGACCGA
>chr1D_1
CAGCAATGCTTGATCTACGTTATACTACCTCCATAGACGT----------------------------------------
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--------------------------------------------------------------------------TGGGGC
AGTTTAAATTAAATTGTCTCAAAGTCTTATATTTAGGAATGGAAGAAGTATAATTTACGTGTTTAACGCGCAGTCCTACC
AGGGGGTAGGATTGGATGACTTAGGGGAGGAAGGGGCCCACCCTCCTAATATTCGGGGAGGGGGGTGATAATTAATTGTG
AGCATTATGTAGAGTTTTTGTCAAACATACCTAGATGTAGGTTTTTTTTATTCACCAGCTCCCCTCGGCCAATCTGGAAC
GGAGGTAATACAAAACAAGTCCGACCACCAGCTCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------
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--------------------------------------------CTTATGCCCCATTGCAATTATTGTCAAACTTTGACC
ATAAAATGAACTAATAAAATATAAACTATATGTGACAAAACTATATTGTGTGAATTCTCTTTTGAATGCAAATA--CAAT
TCTGTAATTTTTGTATTATATAAATAATACGATGTGACTGAGTTATATAAATGAGCAACATTTGATACAAAATACTAGTA
GGG---CTAATAAACCTTGACGAGGGAGTATCCAAGTAGCCGA---------------GCAACACGTTCATCCACCCTTG
AATCACGTGGTACGTTGTTGTCTTCTTTAGCAGCCCAACGTGTTGTCCACTACGAAATCAAGTGTGGCCAATTTAGGAGC
CACCTCGTGTACCACGCACGCTGCATGCATGCATGTG-CGACATTATCTTCTCTGCATATGCGGCTAGTTAGCACAAGCA
AACAATTTCTCGTGCTCCACGCGTGCATGTGTGAGAGCATCTTATCTTCTCTCCTGCTTGTCTCATGCATGTGAGAGCAT
C-TAT-CTCATCTTCTGTCGTGATAAATCTTCCCTATAAATAGGGC-AAGTGTTATGCAAATACTCATATCAGTCAAGTT
CAGAGTAAGCTCGAGGTCCATTTAGCTGGTTAGTAGTGTTGGGTATATATTCCATATTCCATATTTCCATTTCCATATGC
TTTCTGTCAATAAGTTTCTCTGTATGCATCATCCTCATACTTGACTTTCTCCAGGGTCTTATTGAAG-------------
----------GCATTGTTTTTAGGTGAACTCGGACTTTCTCCAGGGTGAAGATC--------------------------
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------------------------------------------------CAAGATTTTCGATCGAGCAACGACAACG----
-CTTATGCATTGTTTCCTTCTTGGGGGCG---------------------------------------------------
--------------------------------TTGCTTTTGGAGAACCTCATTTGTATTTCGGGTGTTGTCTTCGGTGGT
TGGTAGAGTGCTACTGATGCTAGTGATACATCACCGTGGCAGGGTCTTTTTTTCTGTTCCTTCTATTTTCCTTTTTGGCT
GTGTG---------------------------------------------------------------------------
---------------------------------------------------TATTCTTGATGCCTTTGAACATCTTGTTG
GTATAGAGGCCGGGTGTAATTGGTATCTTCGTG----ATATTAATATGTTCC-TTTTGTCAAAAAAA-------------
-----------ATTTAGATAGGAAGTAAGAATTATATACAAATAAGCACCACATAAACGGCAGCCCAAACTTCCCATTCC
GTCATCGCAACACTAAGTAACTA--CTCGCTTAAGACTATCTTTCTCCATCTTCCTTGACTCAAGGCAAT----GCTGGT
GAATTTTATCGACTACTGATGTATGAAGCAGAGAGGTGTTGTTG----AACACCCTTGTGCTTCTCTCAAGCACATGCAT
CATAGCGAGCAGAGGATCAACCAGTTGACACCTTTTCTCAGCTTGGGAGGGATGCCCTGCTGAAGATCAGACCACCAGGT
GA-------------------G-------------------GACGTCTGGTTCGGCAGGAAGATC---------------
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-------------------------------------------------------------------------CATCTCA
GGATGTGAGACCAGACCTCACGCGCAAGAC-------CATCATTAGGTGCTCGGTCGTTTCCTTAGGTACAC-------A
TCTCTC--TTTTTTTGGATATTTTCTTGGTAGTGAATTAGTGATTAAACTTTTTAGAGGAAAGGTATTTC--TGTCCAGA
ATTTGGTGATTAAAATTGAGCTGTGAACTTGGGATTGCTCGGAAATTACATGCATGGCATTGAGATATGCACAAATTTAA
TTAGGCTTGTCTTAATCTACTCTGGCTGGAACTTCACAGTTTGGCATACATGTACATACATAACTGACCGA
>chr1D_1
CAGCAATGCTTGATCTACGTTATACTACCTCCATAGACGTTGGGGCAGTTTAAATTAAAATTGTCTCAAAGTTTTATATT
TAGGAATGGAAGAAGTATAATTTACGTGTTTAACGCGCAGTCCTACCAGGGGGTAGGATTGGATGACTTAGGGGAGGAAG
GGGCCCACCCTCCTAATATTCGGGGAGGGGGTGATAATTAATTGTGAGCATTATGTAGAGTTTTTGTCAAACATACCTAG
ATGTAGGTTTTTTTTATTCACCAGCTCCCCTCGGCCAATCTGGAACGGAGGTAATACAAAACAAGTCCGACCACCANNNN
NNNNNNCACATGTTCAGTAAAAATATATTAATCACTTGGGTTGTTTTGTGTCCATTTGAGTGCGGACAAGAATGTCTATG
AAACACAGATCAAAAGCAAAATACCATGGCATGTCTAAAGAGAGCTCTTACAAGGAACTGTTTGGGTGTGAAAATTCATC
CTAAGGGCCAGTGTGGAACCAGTGATTTTTTTTCCAGCAATGCTTGATCTACGTTATACTACCTCCATAGACGTTGGGGC
AGTTTAAATTAAATTGTCTCAAAGTCTTATATTTAGGAATGGAAGAAGTATAATTTACGTGTTTAACGCGCAGTCCTACC
AGGGGGTAGGATTGGATGACTTAGGGGAGGAAGGGGCCCACCCTCCTAATATTCGGGGAGGGGGGTGATAATTAATTGTG
AGCATTATGTAGAGTTTTTGTCAAACATACCTAGATGTAGGTTTTTTTTATTCACCAGCTCCCCTCGGCCAATCTGGAAC
GGAGGTAATACAAAACAAGTCCGACCACCAGCTCCCCCNNNNNNNNNNCACCAATCAG----------------------
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-------------------------------------------------------------------------------G
AGCATCCATTCGATATCCATCCAATGGCCCATGTTTAATTTTTTATTTTTGCAACTTAGGAGCTGCTTTTATGGTAGTCA
TCCCCGCTTATCTGCGTTTTGAGTTACTCCC-TTGTCCGGTTTACTTATGCCCCATTGCAATTATTGTCAAACTTTGACC
ATAAAATGAACTAATAAAATATAAACTATATGTGACAAAACTATATTGTGTGAATTCTCTTTTGAATGCAAATA--CAAT
TCTGTAATTTTTGTATTATATAAATAATACGATGTGACTGAGTTATATAAATGAGCAACATTTGATACAAAATACTAGTA
GGG---CTAATAAACCTTGACGAGGGAGTATCCAAGTAGCCGACATGATCTACACCGAGCAACACGTTCATCCACCCTTG
AATCACGTGGTACGTTGTTGTCTTCTTTAGCAGCCCAACGTGTTGTCCACTACGAAATCAAGTGTGGCCAATTTAGGAGC
CACCTCGTGTACCACGCACGCTGCATGCATGCATGTG-CGACATTACCTTCTCTGCATATGCGGCTAGTTAGCACAAGCA
AACAATTTCTCGTGCTCCACGCGTGCATGTGTGAGAGCATCTTATCTTCTCTCCTGCTTGTCTCATGCATGTGAGAGCAT
C-TAT-CTCATCTTCTGTCGTGATAAATCTTCCCTATAAATAGGGC-AAGTGTTATGCAAATACTCATATCAGTCAAGTT
CAGAGTAAGCTCGAAGTCCATTTAGCTGGTTAGTAGTGTTGGGTATATATTCCATATTCCATATTTCCATTTCCATATGC
TTTCTGCCAATAAGTTTCTCTGTATGCATCATCCTCATACTTGACTTTCTCCAGGGTCTTATTGAAG-------------
----------GCATTGTTTTTAGGTGAACTCGGACTTTCTCCAGGGTGAAGATC--------------------------
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------------------------------------------------CAAGATCTTCGATCGAGCAACGACAACG----
-CTTATGCATTGTTTCCTTTTTGGGGGCG---------------------------------------------------
--------------------------------TTGCTTTTGGAGAACCTCATTTGTATTTCGGGTGTTGTCTTCGGTGGT
TGGTAGAGTGCTACTGATGCTAGTGATTCATCACCGTGGCAGGGTCTTTTTTTCTGTTCCTTTTATTTTCCTTTTTGGCT
--GTG---------------------------------------------------------------------------
---------------------------------------------------TATTCTTGATGCCTTTGAACATCTTGTTG
GTATAGAGTCCGGGTGTAATTGGTATCTTTGTG----ATATTAATATGTTCC-TTTTGTCAAAAAA--------------
-----------ATTAAGATAGGAAGTAAGAATTATATACAAATAAGCACCACATAAACGGCAGCCCAAACTTCCCATTCC
GTCATCGCAACACTAAGTAACTA--CTCGCTTAAGACTATCTTTCTCCATCTTCCGTGACTCAAGGCAAT----GCTGGT
GAATTTTATCGACTACTGATGTATGAAGCAGAGAGGTGTTGTTG----CACACCCTTGTGCTTCTCTCAAGCACATGCAT
CATAGCGAGCAGAGGATCAACCAGTTGACACCTTTTCTCAGCTTGGGAGGGATGCCCTGCTGAAGATCAGACCACCAGGT
GA-------------------G-------------------GACGTCTGGTTCGGCAGGAAGATC---------------
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-------------------------------------------------------------------------CATCTCA
GGATGTGAGACCAGACCTCACGCGCAAGAC-------CATCATTAGGTGCTCGGTCGTTTCCTTAGGTACAC-------A
TCTCTC--TTTTTTTGGATATTTTCTTGGTAGTGAATTAGTGATTAAACTTTTTAGAGGAAAGGTATTTC--TGTCCAGA
A-TTGGTGATTAAAATTGAGCTGTGAACTTGGGATTGCTCGGAAATTACATGCATGGCATTGAGATATGCACAAATTTAA
TTAGGCTTGTCTTAATCTACTCTGGCTGGAACTTCACAGTTTGGCATACATGTACATACATAACTGACCGA
>chr1D_1
CAGCAATGCTTGATCTACGTTATACTACCTCCATAGACGT----------------------------------------
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--------------------------------------------------------------------------TGGGGC
AGTTTAAATTAAATTGTCTCAAAGTCTTATATTTAGGAATGGAAGAAGTATAATTTACGTGTTTAACGCGCAGTCCTACC
AGGGGGTAGGATTGGATGACTTAGGGGAGGAAGGGGCCCACCCTCGTAATATTCGGGGAGGGGGGTGATAATTAATTGTG
AGCATTATGTAGAGTTTTTGTGAAACATACCTAGATGTAGGTTTTTTTTATTCACCAGCTCCCCTCGGCCAATCTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
AGCATCCATTCGATATCCATCCAATGGCCCATGTTTAATTTTTTATTTTTGCAACTTAGGAGCTGCTTTTATGGTAGTCA
TCCCCGCTTATCTGCGTTTTGAGTTACTCCC-TTGTCCGGTTTTCTTATGCCCCATTGCAATTATTGTCAAACTTTGACC
ATAAAATGAACTAATAAAATATAAACTATATGTGCCAAAACTATAT----------------------------------
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>chr1B_392
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--------------------------------------------------------------------------TAGTCC
TCCCCGCTTATCTGTATTTTT-GTTACTCCCTTTGTCCAGTTTTATTATGCCGAAATGTAATTATTGTCAAACTTTTACC
ATAAAATGAACTAATAAGATATAAATTATATA-GATAAAATTATAGTGTGTGAATTCTCTTTTGAATGCAAATCCT--AT
TATATACTTTTTGTATTATATAAATAACACAATGCGATTGAGTTATATAGATGATCAACTTTTGATCTAAAATACTAGTA
TGG---CTAATAAACCTTGACGAGGGAGTACGCAAGTAGCCGACATGATCTACACCGAGTTACAAGTCCATCGACCCTTG
AATCACGGGC-ACGTTGTCGTCTTCTTTAGCAGCCCCACGTGTTGTCCATTACGAAATCAAGTGTGTCCAATTTAGGAGC
CACGTCGTGTACCA--CACGGTGCATGCACGCATGTG-CAGAGC-ATCTTCTCTGCAAATGAGGCTAGTTAGCACAATAA
AATAAGTAGTCGTGCTCCACGCCTGCATGTGTGAGAGCATCTTATCTTCTCTCGTGCTTGTCTCATGCATGTGGGAGCAT
CCTATCCCCATCTTCTCTAGTGATAGATCTTCCCTATAGATAGGCCT-AGCGTTATGCAAATACTCATACCGGTCAAGTT
CAGAGTGAGCTCGAGGTTCATTTAGCTGGTGAGTAGTGTTGGGTATGTATTCCATATT------TTCCATTCCCATATGC
TTTCTGTCAATAAGTTTCTCTGTATGCATCGTCCGCGTGGAGAGGCCGGGGTTATCCTCCTTTTCGAAAAAAGCTATATG
ACCAGCATTAT-GTTATTTTGATCCGTAGTCTGAACCAATAAAAGAAAGATGATTTGGTGAACTATTTGGGCCAACTGTT
ATTGT-ATTTGTAGTCTGAATTGAACTATTTTGATCAATTGTTTGCAGCTCACGGAATCGAGGATGAGCTGCGTCGCCCC
AAAAGCCCCCGCCGGAGAGGAGAAGAAGACGTCATGGCCTGAGGTAGTGGGAAAGTCAATCGAGGAGGCCAAGGAGATCA
TCCTTAAGGACATGCCTGACGCCGACATCGATGTCCTTCCTGCTGGCTTGGCGATGACCCTCGACTTCAGGACCAACCGT
GTCCGCATCATCGTCGACACTGTAGCGACCTCCCCTTCCATTGGTTAGCAAGCTTTGCGAGCGAGAGACAAAATGGATGC
ACTTATGCATGCTGATGAATAAGTTGTTTCAATAATGATGGATGAATAAATACACGCTGACCAATGGCGTGTGTCGATGT
ACTTATTGGTAAATGGACTTGACCAGTTATTTTTAATTTATGAGATGTGGGCTTGTTGTTCATGTGTTTACTAAAATGCT
CATGAAATATGCAT-ACTGTGGGCATGTTGCTGGATTATTTCAACAACTTAGACCTAATGATGGCATTAGAATG-AATAT
ACTAACCACACCTTAATCTACTTAGAGAAGAACTCGAGCCCCATGAGATATCTTAAATGGATTATTTCGTGCTTTGGACA
AACTTCTGAGATGAGAATTAGTTTTAGTGTGACCCCGTGCCTA-TCAACATTATTGTTGATGAGGCTTAACCTTTTGCTC
AAACCCTTTGCCGACATATAAGAAA----CATG----ATATACACATCTTTT-TTTTCTTTGAGAAATGCATGAGACAAG
TGTACCCATATATTAAGATAGGAAGTAAGAATCATATACAAATAACCACCACATAAACGGCAGCCCAAACTTCCCATTCC
GTCATCGCAACACTAAGTAACTATACTCGCTTAAGACTAATTTTCCCCACCTTCCGCTACTCAAGGCAATGCTCGCTGGT
GAATTTTATCGACTACTGATGTATGAAGCAGAGAGGTGTTCTTGAACTAACACCCTTGTGCTTCTCTCAAGCACATGCAT
CGTAGCGAGCGGAGGATCAACCAGTTGACACCTTTTCTCAGCTTGGGAGGGATGCCATGCTGAAGAGCAGACCACCAGGT
GAGGACGTCGCCGGTAGCACTG-------------------GACGTCTGGTTCGGCAGGAAGATC---------------
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-------------------------------------------------------------------------CATCTCA
GGATGTGAGATGAGACCTCACGCGCAAGCACACGAAGCATCATTAGATGCTCGGTCGTTTCCTTAGGTACAC-------A
TCTCTGTTTTTTTTTGGATATTTTCTTGGTAGTGAATTAGTGATTAAACTTTTTAGAGGAAAGGTATTTCGCTGTCCAGA
A-TTGGTGATTAAAATTGAGTTGTGAACTTGGGATTGCTCGGAAATTACATGCATGGCATTGACATATACACAGATTTAA
TTAGGCTTGTCTTAATGTACCCTGGATGGAACTTCACAGATTGGC--ACATATACATACATAACTGAC---
>chr1A_416
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------------------TTGAGTTACTCCC-TTGTCTGGTTTTATTATGCCCCGTTGTAATTATTGTCAAACTTTGACC
ATAAAATGAACTAATAAAATATAAACTATACGTGACAAAACTATATTGTATGAATTCTCTTTTGAATGCAAATA--CAAT
TCTATACTTTTTGTATTATATAAATAATACGATGTGACTAAGTTATATAAATGAGCAACATTTGATACAAAATACTAGTA
GGG---CTAATAAACCTTGATGAGGGAGTATGCAAGTAGCCGACATGATCTACGCCGAGCAACACGTCCATCCACCCTTG
AATCACGTGGTACGTTGTTGTCTTCTTTAGCAGCCCAACGTGTTGTCCACTACGAAATCAAGTGTGGCCAATTTAGGAGC
CACCTCGTGTACCACGCACGCTGCATGCATGCATGTG-CGACAGTACCTTCTCTGCATATGCGGCTAGTTAGCACAAGCA
AACAATTTCTCGTGCTCCACGCCTGCATGTGTGAGAGCATCTTATCTTCTCTCCTGCTTGTTTCATGCATGTGACAGCAT
C-TAT-GTCATCTTCTGTCGTGATAAATCTTCCCTATAAATAGGGC-AAGTGTTATGCAAATACTCATATCAGTCAAGTT
CAGAGTAAGCTCGAGGTCCATTTAGCTGGTTAGTACTGTTGGGTATATATTCCATATT-------TTCATTTCCATATGC
TTTCTGCCAATAAGTTTCTCTGTATGCATCATCCTCATACAGAGGCCGGGGTTATCCTTCTTTTCGAAAAAAGATATATG
ACTAACATTAGCATTGTTTTGATCTGTAGTCTGAACCAA-AAAGGAAAGACGATTTGATGAACTATTTGGGCCAACTGTT
ATTGTGATTTGTAGTCTGAACTGAACTATTTTGATCAATTGTTTGCAGCTCACCGAATCAAGGATGAGCTGCGCCGCCCC
AAAAGCCCCCGCCGGAGAGGAGAAGAAGACGTCATGGCCGGAGGTAGTGGGAAAGTCCATCGAGGAGGCCAAGGAGATCA
TCCTTAAGGACATGCCTAACGCCGACATCGATGTCCTTCCTGCTGGCTCGGCGATGACCCTCGACTTCAGGACCAACCGT
GTCCGCATCATCGTTGACACTGTCGCGATCACCCCTTCCATTGGTTAGCAAGCTTTGCGAGCGAGATACAAAATGGATGC
ACTTATGCATTCTGATGAATAAGTAGTTTCAATAATCATGGATGAATAAATACACGCTGATCAATGGCGTGTGTCGATGT
ACTTATGGTTCAATGGACTTGACCAGTTATTTTTAATTTATGAGATCTCGGCTTGCTGTTCATGTGTTTACTAAAATGCT
CATGAAATATGCAT-ACTATGGGCATGTTGCTGGATTATTTCAACAACTTAGACCTAATGGTGTCATTAGAATGAAATAT
ACTAATCACACCTTAATCAACTTAGAGAAGAACTCCAGCCCCATGAGATATCTTAAATGGATTCTTTTGTGCTTTGGACA
AACTTCTGAGATGAGAATTAGTTTTAGTGTGACCCCGTGCCTA-TCAACATTATTGTTGATGAGGCTTAACCTTTTGCTC
AAACCCTTTGCCGACATATAAGAAA----CATG----ATATGCACATCTTTTTTTTTCTTTGAGAAATGTATGACATAAG
TGTGCCCATATATTAAGATAGGAAGTAAGAATCATATAAAAATAACTACCACATAAACTGCAGCCCAAACTTCCCATTCC
GTCATCGCAACACTAAGTAACTA--CTCGATTAAGACTATCTTTCCCCACCTTCCGTGACTCAAGGCAAT----GCTGGT
GAATTTTATCAACTACTGATGTATGAAGCAGAGAGGTGTTCTTG----AACACCCTTGTGCTTCTCTCAAGCACATGCAT
CATAGCGAGCAGAGGATCAACCAGCTGACATCATTTCTCAGCTTGGGAGGGATGCCCTGCTGAAGATCAGACCACCAGGT
GAGGACGTCGGCGGTAGCACTG-------------------GACGTCTGGTTCGGCAGGAAGATC---------------
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-------------------------------------------------------------------------CATCTCA
GGATGTGAGACCAGACCTCACGCGCAAGCACACGAAGCATCATTTGGTGCTCGGTCGTTTCCTTACGTACACCGTACACA
TCTCTC---TTTTTTGGATATTTTCTTGGTAGTGAATTAGTGATTAAACTTTTTAGGGGAAAGGTATTTC--TGTCCAGA
A-TTGCTGATTAAAATTGAGCTGTGAACTTGGGATTGCTCGGAAGTTACATGCATGGCATTGAGATATGCACAAATTTAA
TTAGGCTTGTCTTAATCTACCCTGGATGGAACTTCCCAGTTTGGC--ACATACACATACATGACTGACCGA
>chr1B_456
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-----------------------------------------------------------AATTATTGTCAAAGTTTGACC
ATAAAATGAACTAATAAAATATAATCTCTATGGCAG-AAAATATATTATGTGAATTCTCTTTTGAATGCAAATCTTCAAT
GATATACTTTTTGTATTATATAAATATTAC-ATGTGACTGCGCTATATGGATGATTAACTTTTGATCCAAAATACTAGTA
GTAGGTCTAATAAACCTTAACGAGGGAGTATGCAAGTAGCCGACATGATCTACACCGAGCTACACGTCCATCGACCCTTG
AATCACGGGC-ACGTTGTCGTCTTCTTTATCAGCCCCACGTGTTGTCCATTACGAAATCAAGTGTGTCCAATTTAGGAGC
CACGTCGTGTACCA--GACGGCGCATGCACGCATGTGCCAGAGC-ATCTTCTCTGCATATGAGGCTAGTTAGCACAATGA
AACAAGTAGTCGTGTTCCACGCCTGCATGTGTGACAGCATCTTATCTTCTCTCGTGCTTGTCTCATGCATGTGGGAGCAT
CCTAT-CCCATCTTCTCTTGTGATAGATCTTCCCTATAAATAGGCCAAAGTGTTATGCAAATACTCATATCAGTCAAGTT
CAGAGTTAGCTCAAGGTCCATTTAGCTGGTGAGTAGTGTTGGGTATATATTCCATATT-------TCCATTTCCATATGC
TTTCTGTCAATAAGTTTCTCTGTATCCATCGTCCTCATGCAGAGGCCGGGGTTATCCTCCTTTTCGAAAAAAGCTATATG
ACTAGCATTAT-GTTATTTTGATCTGTAGTCTGAACCAA-AAAAGGAAGATGATTTGGTGAACTATTTGGGCCAACTGTT
GTTGTCATTTGTAGTCTGAACTGAACTATTTTAATCAATTGTTTACAGCTCACGGAATCAAGGATGAGCTGCGCCGCCCC
AAAAGCCCCCGCCGGAGAGGAGAAGAAGACGTCATGGCCGGAGGTAGTGGGAAAGTCCATCGAGGAGGCCAAGGAGATCA
TCCTTAAGGACATGCCTGACGCCGACATCGATGTCCTTCCTGCTGGCTCGGCGGCGACCCTCGACTTCAGGACCAACCGT
GTCCGCATCATCGTCGACACTGTCTCGACCACCCCTTCCATTGGTTAGCAAGCTTTGTGAGCGAGAGACAAAATGGATGC
ACTTATGCATGCTGATGAATAAGTAGTTTCAGTAATCATGGATGAATAAATACACGCTGACCAATGGCGTGTGTCGATGT
ACTTATGGTTCAATGGACTTGACCAGTTATTTTTAATATATGAGATGTCGGCTTGTTGTTCATGTGTTTAATAAAATGCT
CATGAAATATGCAT-ACTGTGGGCATGTTGCTGGATTATTTCAACAACTTAGACCTGATGGTGTCATTAGAATGAAATAT
GCTAATCACACCTTAATCTACTTAGAGAAGAACTTGAGCCCCATGAGATATCTTAAATGGATTCTTTCGTGCTTTGGACA
AACTTCTGAGATGAGAATTTGTTTTAGTGTGACCCCGTGCCTA-TCAACATTATTGTTGATGAGGCTTAACCTTTTCCTC
AAACCCTTTGCCGACAAATAAGAAA----CATG----A------------------------------------------
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>chr1A_914
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----------------------------------------------------------TGTCTCATGCATGTGAGAGCAT
C-TAT-CTCATCTTCTCTCGTGATAAATCTTCCCTATAAATAGGGC-AAGTGTTATGCAAATACTCATATCAGTCAAGTT
CAGAGTAAGCTCGAGGTCCATTTAGCTGGTTAGTAGTGTTGGGTATATATTCCATATT-------TCCATTTCCATATGC
CTCCTGCCAATAAGTTTCTCTGTATGCATCATCCTCATACAGAGGCCGGAGTTATCCTTCTTTTCGAAAAAGGATATATG
ACTAGCATTAGCGTTATTTTTATGCGTATTCTTAACCAA-AAAAGAAAGACGATTTGATGACCTATTTGGACCAACTCTT
ATTGTGATTTGTAGTCTGAACTGAACTATTTTGATCAATTGTTTGCAGCTCACCGAATCAAGGATGAGCTGCGCCGCCCC
AAAAGCCCCCGCCGGAGAGGAGAATAAGACGTCATGGCCGGAGGTAGTGGGAAAGTCCATCGAGGAAGCCAAGGAGATCA
TCCTTAAGGACATGCCTGACACCGACATCGATGTCCTTCCTCTTGGCTCGGCGATGACCCTCGACTTCAGGACCAACCGT
GTCCGCATCATCGTCGACACTGTCGCGACCACCCCTTCCATTGGTTAGCAAGCTTTGCGAGCGAGAGACAAAATGGATGC
ACTTATGCATGTTGATGAATAAGTAGTTTCAATAATCATGAATGAATAAATACACGCTCACCAATGGCGTGTGTCGATGT
ACTTATGGTTCAATTGACTTGACCAGTTATTTTTAATTTATGAGATGTCGGTTTGGTGTTCACGTGTTTACTAAAACGCT
CATGAAATATGCATTACTGCGGGCATGTTGCTGGATTATTTCAACAACTTAGACCTATTGGTGTCATTAGAATAAAATAT
ACTAATCACACCATAATCTACTTAGAGAAGAACTCGAGCCCCATGATATATCTTAAATGGATTCTTTCTTGCTTTGGACA
AACTTCTGAGATGAGAATTAGTTTTATTGTGACCGCGTGCCTA-TGAACATTATTGTTGATGAGGCTTAACCTTTTGCTC
AAACCATTT-----------------------------------------------------------------------
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>chr1B_1224
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----------------------------------------------------ATTTGGTGAACTATTTGGGCCAATTGTT
ATTATGATTTGTGGTCTGAACTGAACTATTTTGATAAACTGTTTGCAGCTCACGGAATCGAGGATGAGCTGCGCCGCCCC
AAAAGCCCCCGCCGGAGAGGAGAAGAAGACGTCATGGCCAGAGGTAGTGGGAAAGTCCATCGAGGAGGCCAAGGAGATCA
TCCTTAAGGACATGCCTGATGCCAATATCGATGTCCTTCCTGCTGGCTCGGCGATGACCCTCGACTTCAGGACCAACCGT
GTCCGCATCATCATCGACACTGTCGTGACCACCCCTTCCATTGGTTAGCAAGCTTTGCGAGCGAGAGACAAAATGGATGC
ACTTATGCATGCTGGTGAATAAGCAGTTTCAACAATCATGAATGAATAAATAGACACTTACCAATGGTGTGTGTCGATGT
ACTTATGGTTCAATGGACT---CCAGTTATTTATAATTTATGAGATGTCAGCTTGTTGTTCATGTGTTTACCAAAATGCT
CATGAAATATGCAT-ACTGTGTTCATGTTGCTGGATTATTTCAACAACTTAACCCTAATGGTGTCATTAGAATGAAATAT
ACTAATCACACCTTACTCTACTTAGAGAAGAACTCGAGCCCCATGAGATATCTTAAATGGATTCTTTCGTGGTTTGGACA
AACTTCTGAGATGAGAATTAGTTTTAGGGTGACCCTGTGCCTA-TCAATATTATTGTTGATGAGGCTTAACCTTTTGCTC
AAACCCTTTGCCGACATATAAGAAA----CATGCATGATATACACATCC-TTTTTTTCTTTGAGAAATGCATGAGATAAG
TGTGCCCATATATTAAGATAGGAAGTAAGAATCATATACAAATAACCACCACATAAACGGCAGCCCAAACTTCCCATTCC
GTCATCGCAAGACTAAGTAACTA--CTCACTAAAGACTATCTTTCCCCACCTTCTGCGACTCAATGCAAT----GCTGGT
GAATTTTATCGACTACTGATGGATGAAGCAGAGAGGTTTTCTTG----AACACCCTTGTGCTTCCCTCAAGCACATGCAT
CGTAGCGAGCAGAGGATCAACCATCTGACACCTTTTCTCAGCTTGCGAGGGATGCTCTGCTGAGGAGCAGACCGCCAGGT
GAGGGCGTCGCC--TAGCACTG-------------------GATGTCTGGTTCGGCAGGAAGATC---------------
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-------------------------------------------------------------------------CATCTCA
GGATGTGAGACCAGACCTCACGCGCAAGCACACGAAGCATGATTAGGTGCTCGGTCGTTTCCTTAGGTACAC-------A
TCTATC---TTTTTTGGATATTTTCTTGGTAGTGAAATAGTGATTAAACTATTTAGAGGAAAGGTATTTC--TGTCCAGA
A-TTGGTGATTAAAATTGAGCTGTAAACTTGGGATTGCTCGGAAATTACATGCATGGCATTGAGATATGCACAAATTTAA
TTAGGCTTGT-------------------------------------------------------------
>chr1A_2062
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--------------------GGAAGTAAGAC-TATATACAAATAACCACCACATAAACGGCAGCCCAAACTTCCCATTCC
GTCATCGCAACACTAAGTAACTA--CTCGCTTAAGACAATCTTTCCCCACCTTCCGCGACTCAAGGCAAAA---GCTGGT
GAATTTTATCGACTACTAATGTAGGAAGCAGAGCGGTGTTCCTG----AACACCCTTGTGCTTCTCTCAAGCACATGTAT
CATAGCGAGCAGAGGATCAACCAGTTGACACCTTTTCTTAGCTTGGGAGGGATGCCCTACTGAAGAGCAGACCACCGGGT
GAGGACGTCGCCGGTTGCACTG-------------------GATGTCTGGTTCGGCAGAGTGAATTGCAAAAAACATCGA
CATTGAAGGCTAGAGTTGCAGAAACCACAATTCTACAGTTTTGTGCCAAAGAATACTACTTTTGTGCCTCTCTTTTTTGC
AAAAAACACTAGTTGACTGCTTAGGCCTTTTTGATGATGATTATGACAAGTGGGCCCCTCTTTTGCTGGCGTGGTGTGAC
GGTTCCACACAGACGGCGTTAGACAGGGGGTTTGCCCATATTTACACAATGAACCTAAAATTTTCCATAGACAACCTTCA
GAAAAAACCAAAAAAAGCAATGAACTCATGAGCTGCCCTACGCATTGCAACACGGCGGGTCGCCCCGCATGGGGTCTCCT
TGCCGGCGAGGGACAGTGCCGACGGGGTCTGGGAGGAACGTGCCCATGGGGCATCGCCACTGGCCGTGGCATAGCAGGGA
ACCATGGCCGTGGTAGAGCTTGGTGTGGGTGGGCTGCAAGGCATCCCTCGGGCGGGCGGGCCTGCTCGAGGTCGATGATG
CCCGCTAGATCTGACAGTTTTCAACGTCGGCAGAGGTCGATCCGTTGGTGGGCAGCTGAAGCAACAAAGACCGACGAGGC
GGCAAGGATTTGGGGGGCGGGGCAGCTCATGCTGCGTGTTCCGGCGGCACAACCTGCAGCAGTGAGACAGAGGTCACACT
ACAAGAATCCACTAGTTTGCCATCTGGCGAGTACAGACAGCAAAGAGCTTGCTGTCAGCCTACTAACGGCAAAGATAGAC
GGCAAAGAATACTTTGCCATCAGCTTTTCATCGGGCAGACGGCAACGACTTTGCCGTCAGCCAATCCCATTAATAGACGG
CAGAGATTACAACTTTGCCGTCAGCCAATAGCCAACGTTTGCCATCTGCCTATCTACTATACAAACGGCAAAGAATTTTT
TAATTAAAAAATTCACAGGACACCTGACCATCAAAAGTTGGCAGCTACAATCTTTATAGATCGATAACGAACAGTCTAAG
TGCAGTGGCGACGAGGAACAAATGGATGATGACGAGCACCACAATACCCATCAACATATCCCCACCCGCTACAGATCGTG
TGGTGAGAGAGAGACGGGTGGGAGCCGCTACAGATTGTGCCACCTCATCGATCCCGGAGATCGATCCGCGAGGTGTGTTT
CTTTACTTTGCCGTCTGCTTTTTTATTACAGACGGAAAGGACTATGTCTTCTGCTTTTATTATTACAGACGGCAAACAGG
CATACTTTGCAGTCCGTAATAAGAAACGCAGACGACAAAGATCTTTGCTGTATGTAGATTTTTTGCTTATGGCAAAGTAA
GCTCTTTGCCTTATGTTTTTCTTTTTCGCAGACGGCAAAGTATATTTTGACGCTTTCTTTTTGCCATCTGCTGATAACGG
CAAACCCTTTTTGTACCGTCTGCTCGACAAAAGGCTTACAGCAAAGATGCCTCCTGACGGCAAATTAACTGTTTCCCATA
GTGTCGGGGAGGAGAGAAGGGAGAGAAAGAGGAGGAAGGAGAAGGGAGCGGCTGGGGCGACTCCAGGGCCTCCTGGACGG
CTGCGTGATCAAGCGCCTCTCTGGGCGGCCCGCGGTGGGAGGGCCGATGGCGTGAGCAGGGCTGCCGGCGGTGGGGCAAG
TGGCCGCCAGCGACGGGCCGCCTGAGCACTCATGGGGGGAGGAGTTGGTTGTTTTGCTTTTGGAGGAAGGAGTTTTCTGG
AAAGAAAAACGTCTAACGATATCTACCCGAACTGTTACGCCACGTCAACAAAAGGGGGGTCCACCTACCATAATCATCAT
CAAAATGGCCTAAGCAGTCAACTAGTGTTTTTTGCGAAAAAAAGTAGGCGCAAAATTAATTTTCTTTGGCACAAAACCGT
AGAATTGTGGTTTCTGCAACCCCAGCCTTCAATGTCGATTATTTTTGCAATTCACTTGGTTCGGCAGAAAGATCATCTCA
GGATGTGAGACCAGACCTCACGCGCAAGCACACGAAGCATCATTAGGTGCTCGGTCGTTTCCTTAGGTACAC-------A
TCTCTC---TTTTTTGGATATTTTCTTGGTAGTGAATTAGTGA-------------------------------------
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>SNPs
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---------------------S----------------------------------------------------------
----S---------------------------------------------S-----------------------------
-----------------------S--------------------------------------------------------
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---------------------------------------------------------S----------------------
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------------------------------------------SS------------------------------------
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--------------------------------------------------------S-----------------------
----------------------SSSSSSSSSSSSSSSSSSS---------------------------------------
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---S-----------------------------------------------------------S-------
>forward_1862
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-----------------------------------------------------------------------------TGC
TTTCTGCCAATAAGTTTCTCTA----------------------------------------------------------
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>reverse_3153
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--------------------------------GTAGCACTCGACGTCTGGTT----------------------------
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