>input_sequence_71142
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-------------------------------------------------------------------------------A
TGTTGGCGAGGCTCATGGCGCTGGCGCTCCGCGGCGGCGAGCACGGCGGGCGCCGCGCCTGCTACGGCATCGCGGCGACA
TGCGCGTGGCTGCTCCTCTTCTGCGTGCTCGCCGTCGCCCTCCGCTGCGCCTGGAAGGCCTTCGCGTTCGCCAGCCTCGC
GCTGGTGGCCTTCGGCGCCGTCGACCACTTCGCGCCCGACACCTGGTGCGGCGGCGCGCCAAGCGACGGCGCGGGCGCGC
CGGAGCGAGACCAGTCCAGGGCGGCCGCGGCGGCTACGGCCCGGCGGTTCGGGCTCGGGCGCGCCGCGATCGACGCCCTG
CCCACGTTCGCGTACGGCGACGACGGTGGCGACGTC------GACCTTGAGTCGGGGGGTGACACCGCGTGCTCGGTGTG
CCTCGAGGACCTGCGGGCCGGCGAGACGGTGCGGCGGCTCCCGGCGTGCATGCACGTGTTCCATGTGGAGTGCATCGACA
TGTGGCTGCACTCGCACCGGAGCTGCCCTCTCTGCCGGTGCGACCTCTCGCCGCCACGGAAGGTTGTTACCAAAGCACCG
GCGGTGGAGAATGGAACGCTTGCTGAGGATGAATTGCCTGCGGTG---GCGGCGACGGTGGCAGAGACGGGACCGCTGGC
TGATGATCATGATGCTTCGCCGCCGGTGGTGACAGGGGAGACGAAACCGCCTGCTGGTGCTTCGCCGACGGTGTAG----
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>chr5B_1_TraesCS5B01G271900
TAACTCTGAAAGTTAGTATACAAAATTGAGTCACTTGCTCCCTCCGTTTTTTTAAGTCTGCATATAAGATTTGGTCAAAG
TCAAACTTTGTTAACTTTGGCTAAGTTTATAGAAAGAATATCAAGTTTCATAATATGAGATCAATAATGTTAGATGCATC
ATGAAATTAATTTTCATACCATATAGCTTTAGTATTGTAGATGTTCATATTTTTTTCTATAAAGTTGGTCAAACTTTACT
AAGTTTGACTTTGACCAAATCTTATATGCTGACTAAAAAGAAACACGGAGGGAGTATTTTGGGACGGGGGGAGCATATCT
CAACAGTTGTGAACGGTTTGTAGAGTTTTCGTGGTGGAGTAAACTGAATCAAACTGGGGTACAGGTTGTAATGTGAGCGA
GACAAGTTGAGGCGAGTAAGGTGGACTTTGTCTTAACGAATCCTGTCATTCCGCTATAGCGAAGGCGATCATACTGACTG
GCCTTT--TC-CTTTTCCTTTTCGTTGGCGACGTCGGCCATTGTTGACCCCAGCTATAGGTCTAAGGTGGTAGCAGTACC
GCACAACGATGTGTGCTACTCCTACTACTAGT-----CTATCCGCGGCGGCAAGCAAAGAAACGTATCAC-----CTGCG
CTGCGTAACACAGTCTCTGTCAGCTCAGCCGTGCCGTCAACGGGCCATTTTATTAGCCTTAAACGTGCCCTCCTCGTCAA
ACAATCGGGCAATTAGCTAGCTAATG---GCCGGCGCATCAAGCTAAAGCTTGACCAAAACTAACAGGAACTTATTGTAA
CACACCACTT-ATCTTCCGCGCGCCAACCCACGCCCCTCCGCCCGCCGCCGCGCTCCCCGGACGCGAACAC-----CACC
CCACCACCGCGCGCCCTGGATCCTCAACCGCCGCCTATTTCTATTTCTTCCCCCAAGGACCACCACCG------------
-----CAAGCAACCTCGTCCAGCTGCAGTTGACCGTAGCGACTCGGGCGGTAGGAGCGGGTCGGTCTGACAGAGTGACCA
TGTTGGCGAGGCTCATGGCGCTGGCGCTCCGCGGCGGCGAGCACGGCGGGCGCCGCGCCTGCTACGGCATCGCGGCGACA
TGCGCGTGGCTGCTCCTCTTCTGCGTGCTCGCCGTCGCCCTCCGCTGCGCCTGGAAGGCCTTCGCGTTCGCCAGCCTCGC
GCTGGTGGCCTTCGGCGCCGTCGACCACTTCGCGCCCGACACCTGGTGCGGCGGCGCGCCAAGCGACGGCGCGGGCGCGC
CGGAGCGAGACCAGTCCAGGGCGGCCGCGGCGGCTACGGCCCGGCGGTTCGGGCTCGGGCGCGCCGCGATCGACGCCCTG
CCCACGTTCGCGTACGGCGACGACGGTGGCGACGTC------GACCTTGAGTCGGGGGGTGACACCGCGTGCTCGGTGTG
CCTCGAGGACCTGCGGGCCGGCGAGACGGTGCGGCGGCTCCCGGCGTGCATGCACGTGTTCCATGTGGAGTGCATCGACA
TGTGGCTGCACTCGCACCGGAGCTGCCCTCTCTGCCGGTGCGACCTCTCGCCGCCACGGAAGGTTGTTACCAAAGCACCG
GCGGTGGAGAATGGAACGCTTGCTGAGGATGAATTGCCTGCGGTG---GCGGCGACGGTGGCAGAGACGGGACCGCTGGC
TGATGATCATGATGCTTCGCCGCCGGTGGTGACAGGGGAGACGAAACCGCCTGCTGGTGCTTCGCCGACGGTGTAGATCA
TGTGTATAAGT-TTTTTTAGGCTAGAAAATGTCGTTTCTC----TGCACGACACCCATACACACAGTAGGATCGTCCCTC
TTTCGTGTTGTAAATCTTGTGCATTCCTCTGTATTCCGCCTGTATATAGATGCTGAGACTTGAGACTACATAAATTAAAC
AGATCTTTGTGATTCCTGCCGTCTTTTTGGGGCGGCGAGGTTAGTGTTTTTTGTTGTGTGGCGAAATTTGGGTGTCAGTT
GTTTCAGATCTATTTAAGGGGTTAGCGACGACGGCTGCGGCTCCACGGCGTTGGTTCTTAGAGGCACATGCACAAAGACT
TCCCGACTGTCCTTGACATGGTCAAGCCGGCTTCGATAGAGGAGCGGCGACTCATTCTGGCACGGTAGTGATTGTTTGGT
GGTCTCAGTATCTTGATGTAATTTTTATTATATTTGAGATGCTTTGTATTCTTGGTGGACTTTAATAATAGATCCAAATT
ATTTTTGAAAAAAAAGATCTTGTGATTTTTTTAAACTAATAGATCTTGTGAATTGACAATACGATGTACGAATAGTATCT
GAGAGCAGAAAACTTTGGAGAACGGCGTGGAGGCCGATTTTTTGAAAAAATCAATTTCAAGAAAATCTGAAGAAAAAAAT
GTATGTAAAAATAAGGATGTGAGGCGTATGTGTGTAAAATTTCAGAATGAAATACAATGAAATGCGACCTGTACAAAAAA
ATCATGGTCTGGGAGGATGAACAACATCATGTGTTAAAAAGCCCCAGATCTATCTTTTTTGCACAGCCCTCATTCCAACA
TATTTCGTCCTGAAAATTTACATACTTGTGCACTATGCCTTCATCTATCTCTATATATTTTTCAGAATTTTTTGAAATGT
AAAAATATGAATTTTCATAAATTTTGAATTTTGCATTTGAAGGCTTTCATGGAGCTCAGCCTTCAAAAGCAATTTCCAAA
AACTTTGTACCTACATTTCTGTAATTGTATAACTTGGGGGA
>chr5D_467
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------------------------------------------------------------------GATCAAACTGACCG
GCCTTT--TTTCTTTTCCTTTTCGTCGGCGACGTAGCCCGTTGTTGACCTCAGCC---AGGTCTAGGTGATAGCAGTACC
GCACAACGATGTGTGCTACGCTGCTACTCCTACTACCCTATCCGCGGCGGCAAGCAAAGAAACGTATCAC-----CTGCG
-----TAACACAGTCTCTGTCAGCTCAGCCGTGCCGTCAACGGGCCACTTTATTAACCTTAAACGTGCCCTCCTCGTCAA
ACAATCAGGCAATA----AGCTAATG---GCCGGCGCATCAAGCTAAAGCTTGACCAGAACAAGA-----GC--TTGTAA
TGCACCACTTAATCTTCTGCGCGCCAACCAAGCACG--CCGCCCGCCGCCGCGCTCCCCGGAAGCGAACACCACCACACC
CCACCACCGCGCGCCCTGGATCCTCAACCGCTGCCTATTTCTATTTCCTCCCCCGCGGACCACCACCAAGCTCCACACCG
CAAGCCAAGCAACCTCGTCCGGCCGCAGTTGACCGTCACAACTCAGGCGATAAGAGCAGGT-------------TGACCA
TGTTGGCGAGGCTCATGGCGCG---GCTCCGCGGCGGGGACAACGGGGGGCGCCGGGCCTGCTACGGCATCGCGGCGACG
TGCGCGTGGCTGCTCCTCTTCTGCGTGCTCGCCGTCGCCCTACGCAGCGCCTGGAAGGCCTTCGCGTTCGCCAGCCTCGC
GCTGGTGGCCTTCGGCGCCGTCGACCACTTCGCGCCCGACATCTGGTGCGCCGGTGCGCCAAGGGACGACGCGGGCGGGT
CGGAGCGACACCAGTCCACGGCGGCTTCCGTGG---CGGCTCGACGGTTCGGGCTCGGGCGTGCCGCGATCGACGCTCTG
CCGACGTTCGCGTATGGTGCCAAGGGCGGCGGCGACGACGTCGACCTCGAGTGCGGGGGTGACAGCGCGTGCTCGGTGTG
CCTGGAGGACCTGCGGGCCGGCGAGCTGGTGCGGCGGCTCCCGGCGTGCAGGCACGTGTTCCATGTGGAGTGCATCGACA
TGTGGCTGCACTCGCACCGGAGCTGCCCTCTCTGCCGGTGCGACCTCTCGCCGCCGCGGAAGCTTGTTCCCAAAACGCCA
ACGGTGGAGAGTGAAACGCCTGTTGAGGATGCTTTGCCTGCGGCG---GCGGTTT------CAGAGACGGGACCGCCGGC
TGATGATCATGATGCTTCGCCGCCGGTGGTGACAGTGGAGACGAAACCGCCTGCTGGTGTTTTGCCGACGGTGTAGATCC
TGTGTTTAAGAATTTTTTAGGCTAGAGAATGTCATTTTTC----TGCACGTCACCCATACACACAGTAGGATCCTCGCTC
TTTCGTGTTGTAAATCTTGTGCATTCCTCTGTATTCCGCCTGTATATACATGCTGAGACTTGAGACTACATAAATTAAAC
AGATCTTT------------------------------------------------------------------------
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>chr5A_475
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--------------------------------------------------------------------------TGACTG
GCCTTTTTTC-CTTTTCCTTTTCGTCGGCGACGTCGGCCGTTGTTGACCTCATCAGCTAGGTCTGGGTGGTAGCAGCAGC
GCACAACGATGTGCGCTACTCC----CTCCTGCTACCCTATCCGCGGCGGCAAGCAAAGAAACGTATCGCCTGCGCTGCG
-----TAACACAGTCTCTGTCAGCTCGGCCGTGCCGTCAACGGGCCATTTTACTGACCTTAAACGTGCCCTCCTCGTCAA
ACAGTCAGGCAATA----ACCTAATGGCCGCCGGCGCGTCAAGCTAAAGCTTGACCAGCACAGCACAGGCGC--TTGTAA
TACACCACTTAATCTTCCGCCG--------------------CCGCCGCCGCGCTCCCCGGAAGCGAACACCACC----C
CCACCACCGCGCG-----------CAACCGCTGCCTATTTCTACTTCTTCCCGCACGGACCACCACCAAGCTCCACACCA
CG-----AGCAACCTCGCCCGGCCGCAGTTGACCGTCACAGCTCAGGCGATAAGAGCAGGC-------------TGACCA
TGTTGGCGAGGCTCATGGCGCG---GCTCCGCGGCGGCGAGCACGGCGGGCGCCGCGCCTGCTACGGCATCGCGGCGACA
TGCGCGTGGCTGCTCCTCTTCTGCGTGCTCGCCGTCGCCCTCCGCAGCGTCTGGAAGGCCTTCGCCTTCGCCAGCCTCGC
GCTGGCGGCCTTCGGCGCCGTCGACCACTTCGCGCCCGACATCTGGTGCGCCGGTGCGCCAGGCGACGGCGAAGGCGCGC
CGGAGCGAGACCAGTCCACGGCGCCGGCTT------CGGCTCGACGGTTCGGGCTTGGGCGTGCCGCGATCGACGCCCTG
CCCACGTTCGCGTACGGCGCCGACGGTGGCGACGTCGACGTGGACCTTGAGTCGGGGGGCGACACCGCGTGCTCGGTGTG
CCTGGAGGACCTGCGGGCCGGCGAGCTGGTGCGGCGGCTCCCGGCGTGCAGGCACGTGTTCCACGTGGAGTGCATCGACA
TGTGGCTGCACTCGCACCGGAGCTGCCCTCTCTGCCGGTGCGACCTCTCGCCGCCGCGGAAGGTTGTTACCAAAGCGCCG
GCGGTGGAGAGTGGAACGCCTGCTGATGACGCTTTGCCTGCGGTGGTCGCGGCGACGGTAGCAGAGACGGAGCCGCCGGC
TGATGATCATGATGCTTCGCCGCCGGTGGTGACAACAGAGACGAAACCACCTGCTGGTGCTTTGCCGACGGTGTAGATCC
TCTGTTTAAGAATTTTTTAGGCTAGAAAATGACATTTTTTTTTATGCACGTCACCCATACACACAGTAGGATCGTCGCTC
TTTCGTGTTGTAAATCTTGTGCATTCCTCTGTATTCCGCCTGTATATACATGCTAAGACTTGACACTACAGAAATTAAAC
AGATCTT-------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------
-------------------------S-------------S---------S----SSSSS-SSSS----------------
----------------------SSSSSSSSSS------------------------------------------------
SSSSS--------------------------------------------------S------------------------
------S------SSSSS---------------------------------------S---S-SSSS-SSSSSS------
S----------------------------S-SSS-SSS------------------------S-----------------
-------------------------------S-----------------------S-----------S------------
--------------------S--S------------SS-S----S----S--S----S---SSSSSSSSSSSSS------
---------------------SSSS-------------------------------------------------------
---------------------------------------------S----------------------------------
-----------------------------------------S--------S---S-------------------------
------------------S------S--S-S--SSS----S--S-----------------S------------------
-------------------S------------------------------------------------------------
---S---------------------SS-----------------------S-----------------------------
-------------------------------------------------------S--------------------S---
----------S--------S-----------SS--------------------------S----------------S---
-----------------------------------S--------------------------S----------------S
-----S----S----------------------S---S------------S-------------------------S---
------------------------------------------------S-------------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_417
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-----------------------------------------------------------------------------CGA
GACAAGTTGAGGCGAGT---------------------------------------------------------------
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>reverse_2045
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--------------------------------------------ACGGCGTTGGTTCTTAGAGG----------------
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