>input_sequence_71125
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-----------------------------------------------ATGGTCATCGGGAAGCTGGGCTTGAGCTCCCTC
TTCCACACGAAGGCCAAGGAGGAGGCCACGCCGTCACCACCTCGAGGCGACCCGGCCGCGGCGCCGGCGTGGGCGTGGCC
GTCCTGCAAGCACCCGAGAACGCGGTCCTTCCACGACGCGCCACCACCGCCCGGCGCAAGGACGCTCGCCTCCATCTTCC
TCGACTCCGCCGAGAGCTCCTTCACCAACTCCTCCACCCGGCGCGACTGCTCCGACAGCCCCTCCACGGCGTCCGAGGCG
TCGGCGGAGGGCGGGGCCGACGTCGTCACGGGCGCCG---AGGACGCCGTCGTCGTGGGGCCGCTCCGCTCCTCCGACCG
GCTCCTGTTCGACCCGGGGGCGTCGGGGGCCACGAGCTCCATACTGGAGGAGAAGCTGCCGGCGGGCGCCCGCGAGGCGT
TCGTGGGCGGCCTGGCCGTGGCGTTCGAGTCGGCGGACCCGTACGGGGACTTCCGGGCGTCGATGCAGGAGATGGTGGCC
GCGCACGGGGCCGGCGGCTGGGGCTG------GGGCTGGCTGGAGGAGATGCTGGGGTGGTACCTGCGCGCCAACGGCAA
GGACACGCACGGCGCCATCGTGGCGGCCTTCGTCGACGTCATCGTCTCCGTCGCCGACCCCGGCCGCGGCTC---CTCCT
GCTCGTCCCGGAGCTCCTCCTGCGCGTCCGTGGACGGGGATCAGTAA---------------------------------
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>chr3D_1_TraesCS3D01G368400
AATTTTATTCTATTCAGAATTGAACCCTCTTTTTCTCCTGCAAAAAGAAAACCGAACCACTTCTTTTGGAGAAAAAGGAT
TTCTCTATGATTACTAACAAACCATACAAGTCCGTACAAAACAATAAAAGGTGGAACCTTGAGGTGCTAATGTTTTTTCC
ATTTGAAATGAAAATATGGGTGTTCTATATATTTTTGTTCCGGGCGAAAATATAGATTAGCGAAAACGGAACGAAAAATC
TAGTGGTGGCGGGCTAGTCTTATCGACTAGAGAAGAAATGGGATTTTAGTGTTGAATGTAATGGTCTTAACATATAGATG
GGTGTGGTTTGTGCTCTCTTTGCACAATAACGTGATATACGTATAGCCGGCGAAACAACGAAAGTGCCCTTCTAACGCCA
AGCTCAAATGCTCTTCTTCCTACATGCCAATTTTCATGATGAAATCACATACGTGGAGGTCAGAGGAACAATAACAAAAT
TAGCACTATAAAATGCTTTCAAAAATAGTCTTTTTGAACCATCAATTTTGTTTTATTAGCCCAGAGCATTAGGAATGTTT
TTTCTAACGAAAATTTCACATATGTAGAACATTAAACAATTTTTCTTGCAAAAAAATCACAATTATGATTATTTGATTTT
TTTTTGGGATTTTACTGTTCGAGGAGTTGCTTTTGAGCTCAGAAGCAAAAACCCTCGTGCTGCGCAAAATAATAATTTCC
CTCGAAGAATAGTGCTAAGTTATGAAAGTTTGCATTTGTTGCATAGGGTATATGAAAAGAAGTCCATTTTCCACGTAGGT
GTATGTGTGACAGAGGATGCCCTATTTCCTGTACTAGCCTTCTGCCCTCCCAGCGCTCATTTAAAACCAAACTACCACAG
CCGGCAGTCAGATATAACCGGAGCACCGGTTTTGAAAACACCATACGCACCAAAACCTTTCTTCATCCTTGTCACTT---
-CTC---CTCCTCCGTGTCAGCTCCACTCCTGCTCAGAGGCACAACAATGGTCATCGGGAAGCTGGGCTTGAGCTCCCTC
TTCCACACGAAGGCCAAGGAGGAGGCCACGCCGTCACCACCTCGAGGCGACCCGGCCGCGGCGCCGGCGTGGGCGTGGCC
GTCCTGCAAGCACCCGAGAACGCGGTCCTTCCACGACGCGCCACCACCGCCCGGCGCAAGGACGCTCGCCTCCATCTTCC
TCGACTCCGCCGAGAGCTCCTTCACCAACTCCTCCACCCGGCGCGACTGCTCCGACAGCCCCTCCACGGCGTCCGAGGCG
TCGGCGGAGGGCGGGGCCGACGTCGTCACGGGCGCCG---AGGACGCCGTCGTCGTGGGGCCGCTCCGCTCCTCCGACCG
GCTCCTGTTCGACCCGGGGGCGTCGGGGGCCACGAGCTCCATACTGGAGGAGAAGCTGCCGGCGGGCGCCCGCGAGGCGT
TCGTGGGCGGCCTGGCCGTGGCGTTCGAGTCGGCGGACCCGTACGGGGACTTCCGGGCGTCGATGCAGGAGATGGTGGCC
GCGCACGGGGCCGGCGGCTGGGGCTG------GGGCTGGCTGGAGGAGATGCTGGGGTGGTACCTGCGCGCCAACGGCAA
GGACACGCACGGCGCCATCGTGGCGGCCTTCGTCGACGTCATCGTCTCCGTCGCCGACCCCGGCCGCGGCTC---CTCCT
GCTCGTCCCGGAGCTCCTCCTGCGCGTCCGTGGACGGGGATCAGTAAACTAAT----CTTACTTCCCTGGCATGGTTAAT
GTGGTGAGAGTGAGCTTTGTCGGGCTAGCTAGCTAATGATGGCGGGGTGTGGTAGATGAGTGAGTAGATCACGT----CG
GTACGTGCCGAACACTTGTTTGTACGAGCTCGATCGAGAACGTGCGTGACCATGAAAGTTACGTACTTAATTTTAACTGC
---CTTCTTTGTGGTAGCTGAAATCTCGTGCCAACATGTGATGGATCGATGT-----TTGCACGTCTGGTGATGGTTTCA
CGACGTCGT---------TCGAGAGTGCAGTAAAAGATCCTGTAGTTGTGCAAGTGAAGGACCACCTGAGTGTACTGCTC
GCTAGGAGTTAACCTGCAGTGATTAC---------------------------------------GATGAAAGCAAAATA
GTATTGCTACCGTACAGCACGATGGCAGTTGGGGAGTACTGTACCAAATTTGTGCGCTAGCGTATACGGTGAGTTTGTGA
TGTCAAAACTCAAACGTCCAACGCGGGAATGAGCACAGAATGTTTCAAGAGAAAATAACAAATCAGCACGTTGCA-----
-------AAAAAATAAATAACAAATCAGCACAGTTATGGACAGAAACACAACCGTCGACGATAATGATACAGTGTACTCC
CTCCGTTCCAAAATAGATGACCCAACTTTGTACTAACCTTATACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTAT
ATGTGAACTCATTTCCAATTCCACAGACGCATGAAGAGAAATTGACGCGTCAATCAATTTTCCCAAGACACGCTGCATCA
AGCCAGAGGCGGGAGGCCATCACACCCCCGACGAGGGTGAGGCAAAATCGAACCAGAGATGAAGAAAGACACGACTGGTC
GCACAGGCACCGGCGGAAGCTCGGTAGAGGGATGACGGATATGGGTGCATGATGGACGGGGGTAGGGGTGGGATTATTGG
ATATCCTGACCGGTGGAAGATGGATGGAGGAGGCGGTTCGGGTAGAGCAAGGCAACGAGGCCACGCATAGTGGCGCCATC
AAT
>chr3B_834
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---------------------------------CTGGCCTTCTCCCCTCCGAGCACTCATTTAAAACCAAACTACCACGG
CCGGCAGCCAGATATAACCGGAGCACCGGTTTTGAAAACACCATACACACCAAGACCTTCCTTCATCCTCGCCGGTCGTC
ACTT---CTCCTTCGGGTCAGCTCCACTCCT---CAGAGGCACAGCAATGGTCATCGGGAAGCTGGGCTTGAGCTCCCTC
TTCCACACGAAGGCCAAGGAGGAGGCCTCGCCGTCACCTCCTCGAGGCGACCCGGCCGCGGCGCCGGCGTGGGCATGGCC
GTCCTGCAAGCACCCAAGAACGCGGTCCTTCCACGACGCGCCGCCACCGCCCGGCGCAAGAACGCTCGCCTCGATCTTCC
TCGACTCCGCCGAGAGCTCCTTCACCAACTCCTCCGCGCGGCGCGACTGCTCCGACAGCCCCTCCACGGCGTCCGAGGTG
TCGGCGGAGGGCGGGGGCGACGCCGTCACG---GCCG---AGGACGCCGTCGTCGTGGGGCCCCTCCGCTCCTCCGACCG
GCTCCTGTTCGACCCGGGGGCGTCGGGGGCCACCAGCTCCATACTGGAGGAGAAGGTGCCCGCGGCCGCCGGCGAGGCGT
TCGTCGGTGGCCTGGCCGTGGCGTTCGAGTCGGCGGACCCGTACGGGGACTTCCGGGCGTCGATGCAGGAGATGGTGGCC
GCGCACGGGGCCGGCGGCTGGGGCTG------GGGCTGGCTGGAGGAGATGCTGGGGTGGTACCTGCGCGCCAACGGCAA
GGACACGCACGGCGCCATCGTGGCCGCCTTCGTCGACGTCATCGTCTCCGTCGCCGACCCCGGCCGCGGCTC---CT---
GTTCGTCCCGGAGCTCCTTCTGCGCGTCCGTGGACGGAGATCAGTGAACTAAT----TTTACTTCCGTGGCATGGTTAAT
GTGGTGAGAGTGAGCTTTGTCGAGCTAGCT----AATGATGGCGGAGTGTGGTAGATGAGTGAGTAGATCACGT----CG
GTACGTGCCGAACACTTGTTTGTATGAGCTCGACCGAGAACGTGCATGAGCATGAAAGTTACGTACTTAATTTTAACTAG
CTTCT--TTTGTGGTAGCTGAAATCTCGTGCCAACATGTGATGGATATATGT-----TTGCACGTATGGTAATGGGTTCA
GGACGTCGT---------TCGA-----CAGTAAAAGAT-TTGTAGTTCTGCAAGTTCAGGACCACCTGAGTGTACCGCTA
GCTAGGAGTTAACCTGCAGTGATTACTACTGATGTTCAAAAAAATAAATAACCTGCAGTGATTACGATGGAAGCAAAATA
GTACTACTACCGTACAGTACGATGGCAGTTGGGGAGTACTGTACCAAATTTGTATACTAGCGTATACGGTGAGTTTGTGA
TGTCAAAACTCAAACGCCCAACGCGGGAATGAGCACAGAATGCTTCAAGAGATAAATACACACATTGCAAAGAAGAAAAT
AGAACTCAAATACTCAATAACAAATCAG--CAGTCATGGACAGAAACGCAACCATTGGCAATAAC-ATACAGTGTA----
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>chr3A_837
GCCC----------------------------------------------------------------------------
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----------------------------------------TCTCCCCTCCCAGAGCTCATTTAAAACCAAACTACCACGG
ACGGCAGTCGGATATAATGGGTGCACCGGTTTTGAAAACACCATACGCACCAAAACCTTCCTTCATCCTCGCCAGTCGTC
ACTTGTCCTCCTCCGGGTCAGCTCCACTCCT---GAGAGGCACAACAATGGTCATCGGGAAGCTGGGCCTGAGCTCCCTC
TTCCACACGAAGCCCAAGGAGGAGGCCTCGCCGTCACCTCCTCGAGGCGACCCGGCCGCGGCGCCGGCGTGGGCATGGCC
GTCCTGCAAGCACCCAAGAACGCGGTCCTTCCACGACGCGCCGCCACCGCCCGGCGCGAGAACGCTCGCCTCCATCTTCC
TCGACTCCGCCGAGAGCTCCTTCACCAACTCCTCCGCGCGGCGCGACTGCTCCGACAGCCCCTCCACGGCGTCCGAGGCG
TCGGCGGAGGGCGGGGGCGACGCCGTCACG---GCCGCCGAGGACGCCGCCGTCGTGGGGCCGCTCCGCTCCTCCGACCG
GCTCCTGTTCGACCCGGGGGCGTCGGGGACCACCAGCTCCATACTGGAGGAGAAGGTGCCGGCGG---------AGGCGT
TCGTGGGCGGCCTGGCCGTGGCGTTCGAGTCGGCGGACCCATACGGGGACTTCCGGGCGTCGATGCAGGAGATGGTGGCC
GCGCACGGGGCCGGCGGCTGGGGCTGTGGCTGGGGCTGGCTGGAGGAGATGCTGGGCTGGTACCTGCGCGCCAACGGCAA
GGACACGCACGGCGCCATCGTGGCCGCCTTCGTCGACGTCGTCGTCTCCGTCGCCGACCCCGGCCGCGGCTCCTCCT---
GCTCGTCCCGGAGCTCCTCCTGCGCGTCCGTCGACGGGGATCAGTAAACTAACCTTACTTACTTCCGTGGCATGGTTAAT
GTGGTGAG-------------------------------------GGTGTGGTAGATGAGTGAGTAGATCACGTACGTCG
GTACGTGCCGAACACTTG-----------------GAGAACGTGCACGAGCATGAAAGTTAA----TTAATTTTAACTAC
TAGCTTCTTCGTGGTAGCTGAAATCTCGTGCCAACATGTGATGGGTCGATGTTTGCATTGCACGTATGGCAATGGGTTCA
CGACGTCGTCGTTCGAGATCGAGAGTACAGTAAAAGATCTTGTAGTTGTGC-----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------S----------------------------------S-
-----------------------------------------------------------S---------S-S--S-S---
---S-----------S---------------SSS----------------------------------------------
---------------------------S----------S-----------------------------------S-----
---------------S--------------------------S-----------------S-------------------
-----------------------------------S-S------------------------------------------
----------------S-----S-------SSS-----------------------------------------------
---------------------------------S---------------------S---------S----S---------
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------------------------S----------------------------------------------------SSS
------------------------------------------------------------------S-------------
----------------------S-------SSSS----------------------------------------------
------------------------S--------S-----------S---S----------------------------S-
-----------------------------------------------------------------S----S----S----
--------------------------S------------S---------------SS------------------S---S
---------------------------------------------------------------------S----------
---S-S-----------S-----------------------------------SSS------------------------
----------------S-------------------------S---------S--SS---S-SSSSSSSSSSSSS-----
----------S-S-S-------------SS----S------------S-----S-S-S-S----SS----------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_264
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----GGTGGCGGGCTAGTCTTATC--------------------------------------------------------
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>reverse_2215
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------------------------------------------------------CGCTAGCGTATACGGTGAGT------
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