>input_sequence_71121
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--------------------------ATGGCCGGCCAAGGA------GATGATG---TCAAGGTACTGGGCACGGCGGCG
AGCATGTTCGCGATCCGCGTGCGCATGGCGCTGCACGTCAAGGGCGTGAGCTACGAGTACCTGGAGCAGGACCTGTTCCA
CAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCGCAAGGCGGTCCCCGTGCTCATCCACGCCGGCAGGCCCATCTGCG
AGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCCGCCTCGCTCCTCCCCGCGGACCCCTACGACCGC
GCCGTCGCCCGCTTCTGGGCGGCCTACATCGATGACAAGGCTGTCCCCACGTGGATAGGCATCATGAGGGCGGCCACGGA
GGAGGACAGGGCGGAGGGGCTGGCCGCTGCGCTCGCGGCGGTCGCGCCCTTGGAGGACGCCTTCGCCCAGTGCTCTGGCG
GGAAGGCCTTCTTCGCCGGCGACTCCAT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTCGACCTTGCGCTCGGGTGCAACCTCTTCTGGATCGAGGCGC
TGCGCCACATGTTCGGCGTCACGGTCATCGACGCTGGCAGGACTCCACGCCTGGCCGCCTGGGCTGAGAGGTTCGAGCAG
ACGGAGGCTGCAAAGAAGGCGGCGCCGCCCATGGAAAGCATGTTGGAGGAGGCCGAGAAGCTGCGGGCCATGTGGGCTGC
TGCTGCTGCCCCGGCTGCCAAGTAA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr3A_1_TraesCS3A01G437600
CTAGAGAAGGAAGTTTCTGTTCTCTAGGTTCATGGTCAGACTCTAGAGCCGGACTAGCACCATAGTTGATGTAAATCTCT
ATACTATACTTACTTAAGAAAAAGTAAGGTTCCTATTTCACCTTTCTTCCCACCATCCCTTCGCCTAACCTTCCATTTAT
ATGATAATCAATCACCTTAGTTTACTTACCTTCTGAATCAATTCCATTTTAATTTACTTACTTTCTCAACTAATTTCACT
TTAATTTTACCAAACTTCTAATCTAAATATATGTTAATTCACTGTCACAATTTGATGAACATTTATTTACAGGATCACAT
TATTATTGACAGATAAATCACAAGCTAACGTACTAGAATATTTATATTCCATTGCAACGCATGGATATTGTTTTAGTGTA
ATAAAATATGTCATGTTTATATGAAATCCGGACGTGCATATTATAACGAACATGCATCGTATATTTCGCATCAGATTAAC
CACTCAATCTTCTACAAACGGAGCTCATTGCCGGTCCGCATGTCAACACCACCGTCGCCTCGTGCAATGCAGAAATCGAC
TGAGGGAAAAGAAAATTTGCAGGCACCATAAAATAATCAGCCTTTTGGAAGTGTTCCCAGGATGAGTGGGCCGAGTCTCA
TCGCTACAGAAAGCAGACACTGAGAGAGAAGAAGCATTTGCAGGGCATGCCGCGCGCGGAAACATCGTCTAACACTGAAG
CGTCGCGTGTGACGCCAAGCTAGTCAACCTTACTTTGGGGTGCAA--------GCATTCTGCGTACGTATGGGGTGATGC
ACATATA-------CAG---ACCCAACACAATTCCCATGGCTCTAGCAGCTTCTCCACCAACAGCTGCCCCGCTTGATTT
GCGCTATATAAACAACAAGAACCAAGCTA-TGTACGTACACTTGC----AAATTGAGCAAAACTT---------------
----AAGCGCACATACGTACACAGCAGAGCAAATAG------TTTACA----AGCCAAGGAAA--------------AGA
TCGATCGAAGAGGAAGATCGGAAACGATGGCCGGCCAAGGA------GATGATG---TCAAGGTACTGGGCACGGCGGCG
AGCATGTTCGCGATCCGCGTGCGCATGGCGCTGCACGTCAAGGGCGTGAGCTACGAGTACCTGGAGCAGGACCTGTTCCA
CAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCGCAAGGCGGTCCCCGTGCTCATCCACGCCGGCAGGCCCATCTGCG
AGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCCGCCTCGCTCCTCCCCGCGGACCCCTACGACCGC
GCCGTCGCCCGCTTCTGGGCGGCCTACATCGATGACAAGGCTGTCCCCACGTGGATAGGCATCATGAGGGCGGCCACGGA
GGAGGACAGGGCGGAGGGGCTGGCCGCTGCGCTCGCGGCGGTCGCGCCCTTGGAGGACGCCTTCGCCCAGTGCTCTGGCG
GGAAGGCCTTCTTCGCCGGCGACTCCAT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTCGACCTTGCGCTCGGGTGCAACCTCTTCTGGATCGAGGCGC
TGCGCCACATGTTCGGCGTCACGGTCATCGACGCTGGCAGGACTCCACGCCTGGCCGCCTGGGCTGAGAGGTTCGAGCAG
ACGGAGGCTGCAAAGAAGGCGGCGCCGCCCATGGAAAGCATGTTGGAGGAGGCCGAGAAGCTGCGGGCCATGTGGGCTGC
TGCTGCTGCCCCGGCTGCCAAGTAAT--T--AGTGGC------TAGCTGGGAGAAGCTTCTTAATTCAGTTTTCAGTCGC
CACTTTTGTT-GGAGGTTTTGCAGTCGTCAATCGTCACCTTTTTTTTACATCAGCGTCAGTGGTCATTG--TTACCTAAA
GGATTATAAATTTCATT-GTTCTAAGTTGTGTGATTGGTTTCATTGCATAATAAAATGGTCTTTATCTTTGTAAAAGTTG
TGATTATGCTCCACACTTAGACTAGCCACAGTGGATAGTAACATACACTAGTAACATACACATATCCCTAGACTATGTTA
CTATCTTCATAGTGGGTGGTAACTTAAGTGTGGTAACATGCAAAGATTCATTTATTAGGTTATAGACTCATATTGCATTG
GGATATGTGATGTTACAGTAACTACCTAAGTTACTACAACTATCTCTCTCTTCATTAACTCATTGCCACATAAGCAAATT
TGCTGAGTTGGACTTGATGTTACTGCTGAAGTTACTCCCACTGTGGCTAGTCTTATAATTGTGTTAAACTTGCAATT---
-----TATACCATGTATACAATTACCAAACATGTTGACAATCTTTGCCCTTCTGGATCCTCACATCGACAGTGCCGCCTC
CATAATCACGGGAGACAGAGGTCGCGTAGAGAGGGG-----------TCGAGAGGTTGTAATGGTCTGGGATTAATTCCA
CACATTGGGAGGAGATGTTTTGTCCCCGGCAAAAAA--CACAGGGCTGGGAGAGAATTGGATGGGTTTTTTTTTTTGCAG
GAAAAACTTTCAATTTGTTCATCAAACATCAAGAGAGTAAAAAGAACGTAAGAAGCAATTAAAAATTACATCCATCTCCG
ATCTATTCGAGATGTAACCGAATGCATTATATGAAGCAGATGAGGATAAATTCCCGGGCAGGGCTATCCCCGCCAAACCG
TGGGCTTTGAACCCCAC-CCCGGCAAACGAACAAGGCCTCAGCGTGATGCTTTCAGAGAAAAAAGAAACATCCCACCTAA
GTTTATTGCCCCCATATATTT
>chr3D_713
--------------------------------------------------------------------------------
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------------------------------------------------------------------------CACTGAAG
CGTCACATGTGACGCCAAGCTAGTCAACCTTACTTTAGGGGTGACTTTTCAGTGCATGCTGCGTACGTCAAGGGGGATGC
GCATAGCACACCGTGGACCTACCCAACACAATTCCCATGGTTCTAGCAGCTTCTCTTCCAACAACTGTCCCGCTTGATTT
GCGCTATATAAACAACGAGAACGAAGCTA-TGTACGCACACTTGCTTGCAAATTGAG------TATCAAGGGATTGAGGC
TTACAAGAGCACACACGTACACAGCAGAGCAAATAGGAGTAGTTTACA----AGCGGCAAATT-----------------
G-----GAAGAGATCAACCCAACACGATGGCCGGCGAAGGA------GACGACG---TCAAGCTGCTGGGCGCGGCGGTG
AGCCCGTTCGCGGTCCGCGTGCGAATGACGCTGCACCTCAAGGGCGTGAGGTACGAGTACCTGGAGCAGGACCTGTTCAT
CAAGGGTGAGCTCCTCCTCGCCACCAACCCGGTGCTCAAGAAGGTCCCCGTGCTCATCCACGCAGGCAGGCCCGTCTGCG
AGTCGCTTGCCATCGTCGAGTACGTCGACGAGGTCTGGGCTTATGGCGCCTCGCTCCTCCCTGCCGACCATTACGGCCGC
GCCGTAGCCCGCTTCTGGGCCGCCTACATTGATGACAAGCTGTTCCCCGCGTGGATAGGCATCCTACGCGCCGCCACGGA
GGAGGACAGAGCCGAGAAGCTCGAGGCCGCGCTCGCGGTGGTTCGGCCCCTGGAGGACGCCCTCGCCCAATGCTCTGGTG
GGAAGGACTTCTTCGCTGGCGACTCCGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTCGACCTCGCGCTCGGGTGCAACCTCTTCTGGTTCAAGGCGT
TGCGAGAGATGTTCGGCGTGACGGTCATCGACGCCAGCAAGACTCCGCGCTTGGCCGCCTGGGCTGAGAGGTTCGAGCAA
ACGAAAGCAGGGAAGGAGGCGGCCCCGCCCATGAAGAGAATGGTTGAGCACGCCGGCAAGCTGCGGGCTATGTGGGCGGC
GGCTGCTGCA---GCTACCAAGTAATAATTAAGTGGC------AAGCTCGGAGGAGTTTCTTGATTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------
>chr3D_760
--------------------------------------------------------------------------------
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---------------------------------------GTGCAA--------GCATTCTGCGTACGTATGGGGTGATGC
ACATATACAGATTACAG---ACCTAACACAATCCCCATGGCTCTAGCAGCTTCTCCAGCAGCAGCTGCTCAGTTTCATCT
GCGCTATATAAACAACAAGAACGAAGCTA-TATACGTACACTTGC----AAATTGAGCAAAACTT---------------
----AAGCGCACATACGTACACAGCAGAGCAAATAG------TTTACG----AGCACCAAATAGTAGCAAGGAAGAGAGA
TCGATCGAAGAGGAATATCGGAAACGATGGCCGGCCAAGGA------GATGACGATGTCAAGGTACTGGGCACCGCGGCG
AGCATGTTCGCGATCCGCGTGCGCATGGCGCTGCACGTCAATGGCGTGAGCTACGAGTACCTGGAGCAGGACCTGTTCCA
CAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCGCAAGGCCGTCCCGGTGCTCATCCACGCCGGCAGGCCCGTCTGCG
AGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCCGCCTCGCTCCTCCCGGCGGACCCCTACGACCGC
GCCGTCGCCCGCTTCTGGGCCGCCTACATCGATGACAAGGCTGTCCCCACGTGGATAGGCATCATGAGGGCAGCCACGGA
GGAAGACAGGGCGGAGAGCCTGGCCGGTGCGCTCGCGGCGGTCGCGCCCTTGGAGGACGCCTTCGCCCAGTGCTCTAGCG
GGAAGGCCTTCTTTGCCGGCGACTCCAT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGTTACCTCGACCTCGTGCTTGGGTGCAACCTCTTCTGGATCGAGGCGC
TGCGCCACATGTTCGGCATCACGGTCATCGACGCCGGCAGGACTCCGCGCCTGGCCGCCTGGGCTGAAAGGTTCGTCGAG
ACGGAGGCTGCAAAGAAGGCGGCGCCGCCCATGGAAAGCATGTTGGAGGAGGCCGGGAAGCTGCGGGCTATGTGGGCTGC
TGCTGCCGCCCCGGCTGCCAAGTAAT--T--AGTTTGGAGA---------------------------------------
-----------------TTTGCAGTGGTCACC--------TTTTTTTACATCAGCGTCATTGGTCACTTGTTTACCTAAA
GGATTATGAATTTCATT-GTTCTAAGTTGTGTGATTGATTTCATTGCATAATAAATGGTCATCTATCTTTGTAAAAGTTG
TGATTATGCTCCAC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TCTTATAAGTGTGTTAAACTTGCAAAGTTG
CAATCTATACCATGTACACAATTACCAAACATGTTGACAAT-TTTGCCGTTCCGGATCCTCACGTCGACAGCGCCACCTC
CGTAATCGCGGGAGACAGAGGTCGTGGAGAGAGGGGGTGTTTTTTTCTCGAGAGGTTGTAATGGTCTGGGATTAATTCCA
CGCATAGGGAGGAGATGTTTTGTCCCCGGCAAAAAAAACACAGGGCTGGGACAGAATTGGATGGGG----TTTTTTGCGG
GAAAAACTTTCAATTTATTCATCAAATATCAAGAGAGTAAAAAGAACATAAGAAGCATTTAAAAATTACATCCATCTCCG
ATCTATTCATGATGTAACCGAATGCATTATATGGAGCAGGTGGGGATAAATTCCCGGCGAGAGCAATCCCCGCCAAACCG
CGGGGCTTGAACCTCAATCCCGGCAAACGAACAAGGCCTTAGCGTGATGCTTTCAGAG-AAAAAAAAACATCCCACCTAA
AATTATTGCCCCCATATATTT
>chr3B_760
GTGCATGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGCTGCGTACGTCAAGGGTGATGC
GCATAGC----CGTGGACCCACCCAACACAATTCCCATGGCTCTAGTAGCTTCTCTTCCAACAACTGCTCAGCTTGATTT
GCAATATATAAACAACGAGAACGAAGCTA-TGTACGCACACTTGC----AAATTGAG------TATCAAGAGCTTGAAGC
TTAAGAGAACACACACG-ACACAGCAGAGCAAACAGGAGTAGTTTACA----AGCGGCAAAT-----------------A
G-----GAAGAGATCGATCCAAGACGATGGCCGGCGAAGGA------GACGACG---TCAAGCTGCTGGGCTCGGTGGTG
AGCCCGTTCGCGGTCCGCGTGCGAATGGCGCTGCACCTCAAGGGCGTGAGCTACGAGTACCTGGAGCAGGACCTGTTCCA
CAAGGGTGAGCTCCTCCTCGCCGCCAACCCGGTGCTCAAGAAGGTTCCCGTGCTCATCCACGCCGGCAGGCCCGTCTGCG
AGTCGCTCGCCATCGTGGAGTACGTCGACGATGTCTGGGCCGACGGCGCCTCGCTCCTCCCTGCCGACTCTTACGGCCGC
GCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGTTGTTCCCCGCGTGGATAGGCATCCTGCGCGCGTCCACGGA
GGAGGACAGAGCCGAGAGGCTCGACGCCACTCTCGCGGTGGTCGGGCTCATGGAGGACGCCCTCGCCCAGTGCTCCGGTG
GGAAGGACTTCTTCGCCGGCGACTCCGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTCGACCTTGCGCTCGGGTGCAACCTGTCCTGGTTCAAGGCGC
TGCGCGAGATGTTCGGCGTGACGGTCATCGACGCCAGCAGGACTCCGCGCATGGCCGCCTGGGCTGAGAAGTTCGAGCAG
ACGGAGGCGGCGAAGGAGGCGGCCCCGCCCATGAAGAGTATGGTGGAGCACGCCGGGAAGCTGCGGGCTATGTGGGCTGC
TGCTGCCGCG---GCTGCCAAGTAATAATTAAGTGGC------AAGCTCGCAGGAGTTTCTTGATTCGGTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr3B_824
TCTGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AGCTACTCTTCCAGCAACTGTTCAGCTTGATTT
GCACTATATAAACAACCAGAACGAACCTAATAGACGTACACTTCC----AAACTCAG------TT---------------
----AAGAGCACATACGTACACAGCAGAGCAAACAG------TTTACGATCGAGCACCAAATAGCAAAA-----------
-------AAGAGGTCGATCCAAGACGATGGCCAGCGAAGGA------GAT---G---TGAAGCTGCTGGGCACGGTGGTG
AGCCCGTTCGCGGTCCGCGTGCGCATGGCCCTGCATCTTAAGGGCGTGAGCTACGAGTACCTGGAGCAGGACCTGTTCGA
CAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGCCGACAGGCCCGTCTGCG
AGTCGCTCGCCATCGTCGAGTACGTCGACCAGGTCTGGACTGATGCAGCCTCGATCCTCCCCGCGGACCCCTACGGCCGT
GCCGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGCTGTTCCCCGCGTGGATAGGCATCCTGCGCGCCGCCACGGA
GGAGGACAGAGCCGAGAAGCTCGACGCCGCGCTCGCGGTGGTCGGGCCCATGGAGGAGGCCCTCGCCCAGTGCTCAGGTG
GGAAAGACTACTTCGCCGGCGACTCCGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTTGACATCGCGCTCGGGTGCAACCTCTTCTGGTTCGAGGCGC
TCCGCGAGATGTTTGGCGTGACGATCATCGCCGCCGGCAGCACTCCTCTTTTGGCCGCCTGGGCTGAGAGGTTCGTGCAG
AGGGAGGCGGCCAAGAAGGCGGCCCCGCCCATGAAGAGCATGGTGGACTACGCCGGGAAGCTGCGGAGTATCTGGGCTGC
TGCTGCCACC---GCTGCCAAGTAAT--T--AAGTGGCTA---TAGCTTGGAGGAGCTTGTTGATTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------
>chr3A_828
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------GCAGCTACTCTTCCAGCAGCTGTTCAGCTTGATTT
GCGCTATATAAACAACCAGAGCAAAGCTA-TATACGTACACTTTC----AAACTGAG------TT---------------
----AAGAGCACATACATACACAGCAGAGCAAACTG------TTTACGGTCGAGCACCAAGTAGCAAA---TAGTAGCAA
G-----GAAGAGATCGATCCAAGACGATGGCCGGTGAAGGA------GAT---G---TGAAGCTGCTGGGCACGGTGGTG
AGCCCGTTCGCGGTCCGCGTGTGCATGGCCCTGCACCTCAAGGGCGTGAGCTACGAGTACCTGGAGCAGGACCTCTTCAA
CAAGGGCGAGCTCCTCCTCGCCTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCACGCCGGCAGGCCCGTCTGCG
AATCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCAGCCTCGCTCCTCCCCGCGGACCCCTATGGCCGT
GCCGTCGCCCGCTTCTGGGCCGCCTACCTCGACGATAAGCTGTTCCCCGCGTGGATAGGCATCCTACGCGCCGTCACGGA
GGAGGACAGAGCCGAGAAGCTCCACGCCGCGCTCGCGGTGGTCGGGCCCATGGAGGACGCCCTCGTGCAGTGCTCTGGTG
GGAAAGACTACTTCGCCGGCGACTCCGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTTGACATCGCGCTCGGGTGCAACCTCTTCTGGTTCGAGGCGC
TCCATGAGATGTTCGGCGTGACGGTCATCGACGCAGGCAGGACTCCGCGCTTGGCCGCCTGGGCTGAGAGGTTCGTGGAG
ACGGATGCGGCCAAGAAGGCTGCCCCGCCCATGAAGAGCATGGTGGACTACGCCGGGAAGCTGCGGAGTATGTGGGCTGC
CGCTGCCGCC---GCTGCCAAGTAAT--T--AAGTGGCTA---TAGCTCGGAGGAGCGTCTTGATTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr3D_854
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------GCTTGATTT
GCGCTATATAAACAACCAGAACGAACCTAATAGACGTACACTTCC----AAACTCAG------TT---------------
----AAGAGCACATACGTACACAGCAGAGCAAACAG------TTTACGATCGAGCACCAAATAGCAAATAGTAGTAGCAA
G-----GAAGAGATCGATCCAAGACGATGGCCGGCGAAGGA------GAT---G---TGAAGCTGCTGGGCACGGTGGTG
AGCCCGTTCGCGATCCGCGTGCGCATGGCCCTGCATCTCAAGGGCGTGAGCTACGAGTACCTGGAGCAGGACCTGTTCGA
CAAGGGCGAGCTCCTCCTCGACTCCAACCCGGTGCACAAGAAGGTCCCCGTGCTCATCCATGTCGGCAGGCCCATCTGCG
AGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGACGGCGCCTCGCTCCTCCCTGCCGACCCCTACGGCCGC
GCTGTCGCCCGTTTCTGGGCCGCCTACATCGACGACAAGCTATTCCCCGCGTGGATAGGCATCCTGCGCGCCGCCACGGA
GGAAGACAGAGCCGAGAAGCTCGACGCAGCGCTCGCGGTGGTCGGGCCCTTGGAGGACGCCCTCGCCCAGTGCTCTGGTG
GGAAAGACTACTTCGCCGGCGACTCCGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTTGACATCGCGCTCGGGTGCAACCTCTTCTGGTTCGAGGCGC
TCCATGAGATGTTCGGCGTGACGGTCATCGACGCAGGCAGGACTCCGCGCTTGGCCGCCTGGGCTGAGAGGTTCGTGGAG
ACGGAGGCGGCCAAGAAGGCTGCCCCGCTCATGAAGAGCATGGTGGACTATGCCGGGAAGCTGCGGAGTATGTGGGCTGC
TGCCGCCGCC---GCTGCCAAGTAAT--T--AAGTGGCTA---TAGCTCGGAGGAGCGTCTTGATTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr3B_866
CTAGTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TAAACAACAA-AACAAAGCTA-TGTACGTACACTTGC----AAATTGAGCAAAACTT---------------
----AAGAGCACATACGTACACAGCAGAGCAAATAG------TATACG----AGCAACAAA---TAGCAAGGAAGAGATA
--GATCCAAGACGAAGATCGGAAACGATGGCCGGCCAAGGAAATGATGAT---G---TCAAGGTACTGGGCACGGCGGCG
AGCATGTTCGCGATCCGCGTGCGCATGGCGCTGCACGTCAAGGGCGTGAGCTACGAGTACCTGGAGCAGGACCTGTTCCA
CAAGGGCGACCTCCTTCTCACCTCCAACCCGGTGCGCAAGGCCGTCCCCGTGCTCATCCACGCCGGCAGGCCCGTCTGCG
AGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGCCGAT----GCCTCGCTCCTCCCTGCCGACCCCTACGACCGC
GCCGTCGCCCGCTTCTGGGCCGCATATGTCGACGACAAGGCTGTCCCCACGTGGATAGGCATCATGAGGGCGGCCACGGA
GGAGGACAGGGCGGAGAGCCTGGCAGCTGCGCTCGAGGCGGTCGCGCCCTTGGAGGACGCCTTCGCCCATTGCTCTAGCG
GGAAGGCCTTCTTCGCCGGAGACTCTATCGGGTACCCATAGTTGCCATGTTTCCGGTACGGTGGGAACGAGGAACGGGAA
CGACGGACGAGAGCCGGTGGCTGAAAAAAATAGGGTACAACGAGGGTATACTGAACGATTTTTTTATAGCAGGGACGCGA
TCCAATCCGTTTGGGTACGATGAACCCGATACGGTACCATGGGTCGAGGAACGCAGTTCCTGAAGAACGACGACTCCCTG
ACGGACATCATTCCTTGCTGTTAATGGATCCCTTGCAATTAATGGACTGGAGAAAGAACTAGGGTTCCTTGAGAAAAGAA
ATGACGGCGTGAGTAAATTATGCCTCGCGTTTTGGCTGTTGGATCCTGGAACCTGAATCGAGGAGCAGGCTGCGGAGACG
CCGAATCTTCATCGAATCGTACCGAATCCGGCCTCGTTCCCGAATCCGATTCCGAGTCGATGAATCGGGATCGAGGGACG
GCCTACCGTTCCCCGTTTCCGGCTACTATGCGGGTACCTCGATCTCGCGCTCGGGTGCAACCTCTTCTGGATCGAGGCGC
TGCGCCACATGTTCGGTGTCACGGTCATCGACGCCGGCAGGACTCCGCGCCTGACCGCCTGGGCTGAGAGGTTCGTGGAG
ACGGAGGCTGCAAAGAAGGCGGCACCGCCCATGGAAAGCATGTTGGAGGAGGCCGGGAAGCTGCGGGCTATGTGGGCTGC
TGCGGCTGC------TGCAAAGTAAT--T--AGTGGCTACTCCTACCTCGCAGGAGCTTCTTATTT---TTTTCGGTCGT
CACTTTTGTTTGGAGGTTTTGCAGTCGTCAGTCGTCACCTTTTTTTTACATCAGCGTCAGTGGTCACTG--TTACCTAAA
GGATTATAAATTTCATTTGTTCTAAGTT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr3B_981
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GAAGAGATCGATCGAAAACGATGGCCGGGGAAGGA---GACGAT---G---TGAAGCTGCTGGGCACGGTGGTG
AGCCCGTTCGCGGTCCGCGTGCGCATGGCCCTGCACCTCAAAGGTGTGAGCTACGAGGACCTGGAGCAGGACGTGTTCGA
CAAGGGCGAGCTCCTCCTCGCATCCAACCCGGTGCGCAAGAAGGTCCCCGTGCTCATCCACGACGGCAGGCCCATCTGTG
AGTCGCTCGTCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCGGCCCCGCTCCTCCCCACCGACCCCCACGGCCGC
GCCGACGCGCGCTTCTGGGCAGCCTACGTCGACGACAAGGTGGTCACCGCGATGTTAGGCATCCTGCGCGCGACCACCGA
TGTGGAGCGGGCGGAGAGGCCCGACGCCGCGCTCGCGGCGGTCAGGCCCTTGGAGGACGCCTTTGCCGAGTGCTCTGGCG
TCAAGGCCTTCTTCGCCGGCGACTCTGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTCGACCTCGCGCTCGGGTGCCATCTCTTCTGGTTCGAGGCGC
TCCGCGAGATGTTCGACGTGATGATCATCGACGCCGGCAGGACTCCGCGCTTGGCCGCCTGGGCTGGGAGGTTCGCGGAG
ACAGAGACGGCCAAGAAGGCGGCGTCACCCATTAAGAGCATAGTGGAATACGCCGGGAAGCTGCGGGCTATCTGGGCTGC
CATTGCCGCG---GCTGCCAAGTAAT--T--AAGTGGCT---------GGGAAGAGCTTCTTGATTC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr3A_992
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TCGAAAACGATGGCCGGCGAAGGA---GACGGC---G---TGAAGCTGCTGGGCACGGTGGTG
AGCCCGTTCGCGGTCCGCGTGCGCATGGCGCTGCACCTCAAGGGCGTGAGCTACGAGGACCTGGAGCAGGACGTGTTCGA
CAAGGGCGACCTCCTCCTCGCCTCCAACCCAGTGCGCAAGAAGGTCCCCGTGCTCCTCCACGCCGGCAGGCCCGTCTGCG
AGTCGCTAGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCGGCCCCGCTCCTCCCCGCCGACCCCCACGGCCGC
GCCGTCGCGCGCTTCTGGGCCGCCTACGTCGACGACAGGTTGGTCACCGCGATGTTAGGCATCCTGCGCGCGACCACCGA
TGAGGAGCGGGCGGAGAGGCTCGACGCCGCGCTCGCGGCGGTCAGGCCCTTGGAGGACGCCTTTGCCGAGTGCTCTGGCG
GCAAGGCCTTCTTCGCGGGCGACTCCGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTCGACCTCGCGCTCGGGTGCCACCTCTTCTGGTTCGAGGCGC
TGCGCGAGATGTTCGGCGTGATGATCATCGACGCCGGCAGGACTCCGCGCCTGGCCGCCTGGGCTGGAAGGTTCGCGGAG
ACGGAGACGGCCGAGAAGGCGGCGTCGCCCATCAAGAGCCTAGTGGACTACGCCGGGAAGTTGCGGGCTATCTGGGCTGC
TATTGCCGCG---GCTGCCAACTAAT--TTAAGTGGCT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr3D_995
GAAAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CGATGGCCGGCGAAGGA---GACGAC---G---TCAAGCTGCTGGGCACGGTGGTG
AGCCCGTTCGCGGTCCGCGTACGCATGGCGCTGCACCTCAAGGGCGTGAGCTACGAGGACCTGGAGCAGGACGTGTTCGA
CAAGGGCGACCTCCTCCTCGCCTCCAACCCGGTGCGCAAGAAGGTCCCCGTGCTCCTCCACGCCGGCAGGCCCGTCTCCG
AGTCGCTCGCCATCGTCGAGTACGTCGACGAGGTCTGGGCCGGCGCGGCCTCGCTCCTCCCCGCCGACCCCCACGGCCGC
GCCGTCGCGCGCTTCTGGGCAGCCTACGTCGACGACAAGGTGGTCACCGCGATGTTAGGCATCCTGCGCGCGACCACCGA
GGAGGAGCGGGCGGAGAGGCTCGACGCCGCGCTCGCGGCGGTCAGGCCCATGGAGGACGCCTTTGCCGAGTGCTCTGGCG
GCAAGGCCTTCTTCGCGGGCGACTCCGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGGGTACCTCGACCTCGCGCTCGGGTGCCACCTCTTCTGGTTCGAGGCGC
TGCGCGAGATGTTCGGCGTGATGATCATCGATGCCGGCAGGACTCCGCGCCTGGCCGCCTGGGCTGGAAGGTTCGCGGAG
ACGGAGACGGCCAAGAAGGCGGCGTCGCCCATTAAGAGCATAGTGGAATACGCCGGGAAGCTGCGGGCTATCTGGGCTGC
TATTGCCGCG---GCTGCCAAGTAAT--T--AAGTGGCT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>SNPs
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
----S-S-----------------------------S-------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------------------------------S-SSS-S------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S-----------S---------------------------------
-------------------------------------------------------S------------S-----------
-----------------------------------------------------S-------------S------S----S
------------------------------S-----------------------------------S-------------
-------------------------------------S-----------------SS-SSS-S-----------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----------------SS---
----------------S------------------------S------S---S----------S-------S---S----
-S-----S----------------S-S-----------------------------------------------------
-S---S---------------------------------------------S-------------SSSSS--------S-
----------------S---------S--------------------S---------S----------------------
--------SS-----------------------S-----S--S--------------SS--S--S---------------
S---SS-------S--S----------------------S------------------S-----S---------------
SS-------------------
>forward_63
-------------------------------------------TAGAGCCGGACTAGCACCAT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_2315
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AGTCGC
CACTTTTGTTGGAG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
