>input_sequence_71117
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-------------------------------------------------------ATGGAATTCCGGGGAGAGGAGGACG
GGGACGGCAGCGACGTGGGCGACGGCGCCCCGCCCGCGGCACCTCACCGCAGCGCCACCGCAAACGGGCCGGCAGACAAC
ATGCAAGCGGAGGCGAGGCGGCAGTACCACGAGTGCCTCCGTAACCACGCGGCGGCCGCGGGCGGGCACGTCCTGGACGG
ATGCTGCGAGTTCATGCCGGCCTCTCCCGAAGACCCACTCGCATGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCC
GCGACCCCTCGCCGAGGCGCGCCCACTTGCCGCTGCTGGCTGCCAGCGCGCGCGCACCATTGCTGCTCCCGCCGGCGGCG
AGCAAGCACCCGCACCAGCGCTTGCCGTTCCCCTACGGCCTCGCGGCCAGCGGCGGCACCGGCACGACGACCGAGTCCTC
CAGCGAGGAGCGGCGTGGGGCGTCGCCGGCGCCGCGGAAGCGTTCCAGGACGACGTTCACGCGGGAGCAGAAGGAGCAGA
TGCTGGCGTTCGCGGAGCGCGTCGGGTGGAGGCTGCAGCGGCAGGACGAGGCGATGGTGGGGCATTTCTGCGCGCAGGCC
GGGGTCCGGAGGCAGGCGCTCAAGGTCTGGATGCACAACAACAAGCAGAGTAGCAGCGGTAGGAGGCAGCAGC-------
--AGGAGAAGCAGCAGCTTCAGGAGCATAGACAAGAGCAGCAGCAGCAGTAG----------------------------
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>chr3A_1_TraesCS3A01G226100
TGGATATGGCAGCAGCCCTTCAGCCGTTGTGGGGCGTTGGCGAAGCCTCT-CCTTCCTTCTTCCTTGTCTTGG-CCTTCC
TCCATGGTGGATATGGTCTTGCCGCAGCAATGGAGGTGTAACGACTCGTGGAAGATAGATTGGAGATGGATGCCGGCGAC
TAGCGTTGGAGGCGTATAGATAGGAGGCCTCCACAGGTCTTCTCTATGGATGTGACTTCTCCCCTTTGATCCAAGGATTT
TAGAGGAGCTCAATCCCCACCCAATATCTTCCTTGGTTTCTAAGG-ACTCATAGGAACAAACCTGGAC-AAATTGGTGAA
TAATCATGAAAGTTATGGCTGATTCCTCAGCCAAAAATGGGCGGTATGCCTGTGCATAGTCGTAAAATACACATAAACAT
TTCTTAAATACACAGTGAAACATTTTTTTTAAATACACAATGATCTTTTCTTAACATATGGTGACTATTTCTATTAATAC
ATGGTGGACAATAATATGTTGAACTTTTTTAAGGCATAGGTCAAATTTTTGTAAAGATATGGTGAACATTTTTT-AAATA
TACGATGAACATTGTTTTAAACACATGACAATCGTTTTTTCTTAAATACATTGTGATCGGTTTCTATAGATAAGTAAAAT
AAAAAATAGTTTCCTAAATATTTTTTAAATTTTAAATATATATATAAACTGATGAAGTCGAAAGGTCAAATAAAAATGGT
AAGAAAAAGAAGGCAGACGAGTC-GACGAGACCGTACCAAATAAAAATGGT-------AGGAAAATCAGCAGTGTAATGC
AGAGGCAGACTCTATCTCCGGCTCGCTGAGGGCGACATATAGACGCGCCCGACCCAACCTAGCGTGACGGTTCCCAGAAA
TATCCCAGACATGACCGCAACCGCGAGCACAACGTTGACGCACTATTCCCCACCAAAGACGT--AATCGTCAGCCTTGGC
GTGCTGCAGTTTGACAAGCACACGCGCACGCGCGCGCTCTATTTCTATACGCGCAATGGAATTCCGGGGAGAGGAGGACG
GGGACGGCAGCGACGTGGGCGACGGCGCCCCGCCCGCGGCACCTCACCGCAGCGCCACCGCAAACGGGCCGGCAGACAAC
ATGCAAGCGGAGGCGAGGCGGCAGTACCACGAGTGCCTCCGTAACCACGCGGCGGCCGCGGGCGGGCACGTCCTGGACGG
ATGCTGCGAGTTCATGCCGGCCTCTCCCGAAGACCCACTCGCATGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCC
GCGACCCCTCGCCGAGGCGCGCCCACTTGCCGCTGCTGGCTGCCAGCGCGCGCGCACCATTGCTGCTCCCGCCGGCGGCG
AGCAAGCACCCGCACCAGCGCTTGCCGTTCCCCTACGGCCTCGCGGCCAGCGGCGGCACCGGCACGACGACCGAGTCCTC
CAGCGAGGAGCGGCGTGGGGCGTCGCCGGCGCCGCGGAAGCGTTCCAGGACGACGTTCACGCGGGAGCAGAAGGAGCAGA
TGCTGGCGTTCGCGGAGCGCGTCGGGTGGAGGCTGCAGCGGCAGGACGAGGCGATGGTGGGGCATTTCTGCGCGCAGGCC
GGGGTCCGGAGGCAGGCGCTCAAGGTCTGGATGCACAACAACAAGCAGAGTAGCAGCGGTAGGAGGCAGCAGC-------
--AGGAGAAGCAGCAGCTTCAGGAGCATAGACAAGAGCAGCAGCAGCAGTAGCCATGGCAGGAGACGGGTTCCATAGTA-
-GTAGGAGGCAACACTCCTCGCGCCCTTGTAAAGTTTTTAACTGTCGGAAAGTTCTTCTGTTCTTTTTCACTATCTTCTA
ATTGGGCTGATCACTGTTGCTTCTCTGTCATATCAGTGCACGATCATTCCTGGTAGGAGCATTGGTTGGATTGGATTGGA
TTGGGATATTTCTTTTGGTTATTTTTCTGTATACATTTTTTTTAC----TATAAAGAAAAATACTGTCTACACAATGT--
AGTACGTTGTATTTCATTTTATATTTTATTTTCGAGTTGGTGAACTACGCTGTATTATAAGCCTTAATTCATATACTAGT
GCCCTTAAAATTAAAGAAACCATGAGCACACTCATTCTGATAATCGCAACCGATGTG-AAAGAGTTTCTATTGGATGGTT
GATTTTGCGTTTACCGAATCAGAATGGCTTGCCGAGGCATGGCCATG-GCCAGACAGCAGCTGGATTATACCAGGCTTAA
TACAAGTGGACGGTTAGATTTCCACGCGGGACAGGTAATCGCATTGCCTGTTGTGTCCGCATCTGTTATCTTTGAGTTGG
ATTACAAGGATTTTGTTTGAAGGAATTGTGAGGACCATGGTGCGAGGGAGGAAAGGTTGACAAGGATGCCATGGGTTGGA
TACCCCTCAAGATAACAGGCAAGCAAAAAGGAAAGAAACTTCAACATCTTGAGATCTTGCACCATTCGCAGCTTATAAAT
TCTTGAGAAGAGTTCCACTCGAATCTTCATGAGGTGAAAAGGACAAATAGCCACTAGTCTTATAAATGTGGATTGAGCTA
TACGAGCATATAAGTGAAGATTTGGACATTAAATCATAACTGGTTTAAAATGTAACGGCCCTAACAGAGTGGCGGCCGTT
AATATGAGCACGAAATTGAATCCGAATAGAAAGTGCTATCAGAAATTCGCAGTCGACCATAAGAACAAGGTACTCCCTCC
ATATAAATATATCTAGCATAAT
>chr3B_1
TGGATATGGCAGCGGCCCTTCAGCCGTTGCGGGGTGTTGGCGAAGCCTCCCCCTTCCTTCTTCCCTATCTTGGTCCTTCC
TCCATGGTGGATATGGTCTTGCTGCAACAATGGAGGTGTGACGACTCATGGAAGATAGATTTGAGATGGATGCCGGCGAC
TAGCGTTGGAGGTGTATAGATAGAAGGGCTCCATGGGCCTTCTCTATGGATGTGACTTCTCCCCTTTGATCCAAAGATTC
TAGAGGAGCCCAATCCTCGCCCAATACCTCCCTTGGTTTCTAGGGAACTCGTAGGAACAAATATGGATAAAATCGGTGAA
TAATCATAGAAGTTATGGTTGATTCTTCGGTCAAAAATGGGTGGTATGCCCGTGCATGGTCGTAAAATACACAGAAATAT
TTCTTAAATACATGGTGAACATTTC-TTTTAAATACACGGTGATCTTTTCTTAACATATGGTGACCATTTATCTAAATAC
ATGGAGGACAATAATATGTTGAACTTTTTTAAGGCATAGGTTGAATTTTTGTAAAGATATGGTGAACGATTTTC-AAATA
TACGATGAACATTGTTTTAAACACATGATGATCA-TTTTTCTTAAATACATTGTGATCGGTTTCTATAGATAAGTAAAAT
AAAAATTATTTTCCTAAATATATTTTAAATTTTCAAAATATATATAAACTGATGAAGTCGAAATGTCAAATAAAAATGGT
AAGAAAAAGAAAGCCGACGAGTCTGACGAGACCGTACCAAATATATAACGCCAACGAAAGGAAAATCAGCAGTGTAATGC
AGATGCAGACTCTTTCTCCGGCTGGCTGAGGGCGATATATAGACGCGCCCGACC--ACCTAGCGTGACGGTTCCCAGAAA
TATCCCAGACATGACCCCAACCGCGAGCACAACGT--ACGCACTATTCCCCACCAAAGACGT--AATCGTCAGCCTTGGC
GTGCTGCAGTTTGACAAGCACAAGCACACGCGCGCGCTCTATTTCTATACGCGCAATGGAATTCCAGGGAGAGGAGGACG
GGGACGGCAGCGACGTGGGCGACGGCGCCCCGCCCGCGGCACCTCACCGCAGCGCCACCGCAAACGGGCCGGCAGACAAC
ATGCAAGCGGAGGCGAGGCGGCAGTACCACGAGTGCCTCCGTAACCACGCGGCGGCCGCCGGCGGGCACGTCCTGGACGG
ATGCTGCGAGTTCATGCCGGCCTCCCCCGAGGACCCACTCGCATGCGCTGCCTGCGGCTGCCACCGCAGCTTCCACCGCC
GCGACCCCTCGCCGGGGCGCGCTCACTTGCCGCTGCTGGCTGCCAGCGCGCGCGCACCATTGCTGCTCCCGCCGGCGGCG
AGCAAGCACCCGCACCAGCGCTTGCCGTTCCCCTACGGCCTCGCGGCCAGCGGCGGCACCGGCACGACGACCGAGTCCTC
CAGCGAGGAGCGTCGTGGGCCGTCGCCGGCACCGCGGAAGCGTTCCAGGACGACGTTCACGCGGGAGCAGAAGGAGCAGA
TGCTGGAGTTCGCGGAGCGGGTCGGGTGGAGGCTGCAGCGGCAGGACGAGGCGATGGTGGGGCATTTCTGCGCGCAGGCC
GGGGTCCGGAGGCAGGCGCTCAAGGTCTGGATGCACAACAACAAGCAGAGTAGCAGCGGTAGGAGGCAGCAGC-------
--AGGAGAAGCAGC---TTCAGGAGCATAGACAAG------AGCAGCAGTAGCCATGGCAGGAGACAGGTTCCATAGTAC
AGTAGGAGGCAACGCTCCTCGCGCCCTTGTAAAGTTTTTAACTGTTGGAAAGTTCTTATGTTCTTTTTCACTATCTTCTA
ATTGGGCTGATCACTGTTGCTTCTCTGTCATATCAGTGCATGATCATTCCTGGTAGGAGCATTGGTTGGATTGGATTGGA
TTGGGATATTTCTTTTGGTTATTTTTCTGTATACATTTTTTTACTATAATATAAAGAAAAACACTGTCTACACAATGT--
AGTACGCTGTATTTC-------ATTTTATTTTCGAGTTGGTGAACTACGCTGTATTATAAGCCTTAATTCATATACTGGT
GCCCTTAAAATTAAAGAAACCATGAGCACATTCATTCTGATAATCGCAATCGATGTCAAAAGAGTGTCTATTGGATGGTT
GATTTTGCGTTTACCGAATCAAAATGGGTTGCCGAGGCATGCGACATAGCCTGACAGCAACTGGATTATACCAGGCTTAA
TACAAGTGGACGGCTAGATTTCCACGCGGGACAGGTAATCGCATTGCCTGTTGTGTCCGCATCTGTTATCTTTGAGTTGG
ATTACAAGGATTTTGTTTGAAGGAATTGTGAGGACCATGGTGCGAGGGAGAAAAGGTTGACAAGGATGCCATGGGTTGGA
TACCCCTCAAGATAACAGGCAAGCAAAAACGAAAGGAACTTCAACATCTTGAGATCTTGCACTATTCGCAGCTTATAAAT
TCTTGAGAAGAGTTCCACTCGAATCTTCATGAGGTGAAAAGGACAAATAACCACTAGTTTTATAAATATGGATTGAGCTA
TACAACCATATAAGTGAAGATTTGGACATTAAATCATAACCGGTTTAAAATGTAACGGCCCTAACAGAGTGGCGGCCGTT
AATATGAGCACGAAATTGATTCCGAATAGAAAGTGCTATCAGAAATTCACTGTCGACCATAAGAACAAGGTACTCCCTCC
ATATAAATATATCTAGCATAAT
>chr3D_481
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----TGGACAATAATATGTTGAACTTTCTTAAGGCATTGGTTGAATTTTTGTAAAGATATGGTGAACATTTTTTTAAATA
TACGACGAACATTGTTTTAAACACATGATGATCA-TTTTTTAAAAAC--------ATCGGTTTCTATAGATAAGTAAAAT
AGAAAGTATTTTCCTAAATATTTTTTAAATTTTCAAAATATATATAAACTGATGAAGTCGAAAGGTCAGATAAAAATGGT
AAGAAAAAGAGGGCCAACGAGTC-GACGAGACCGTACCGAATATATAACGCCAACGAAAGGAAAATCAGCAGTGTAATGC
AGAGGCAGACTCTTTCTCCGGCTGGCC--------------GACGCGCCCGACCCAACCTAGCGTGACGGTTCCCAGAAA
TATCCCAGACATGACCCCAACCGCGAGCACAACGTTGACGCACTATTCCCCACCAAAAACGTACAATCGTCAGCCTTGGC
GTGCTGCAGTTTGACAAGCACAAGCACGCGCGCGCGCTCTATTTCTTTACGCGCAATGGAATTCCGGGGAGAGGAGGACG
GGGACGGCAGCGACGTGGGCGACGGTGCCCCGCCCGCGGCACCTCACCGCAGCGCCACCGCAAACGGGCCGGCAGACAAC
ATGCAAGCGGAGGCGAGGCGGCAGTACCACGAGTGCCTCCGTAACCACGCGGCGGCCGCGGGCGGGCACGTCCTGGACGG
ATGCTGCGAGTTCATGCCGGCCTCCCCCGAGGACCCACTCGCATGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCC
GCGACCCCTCGCCGGGGCGCGCCCACTTGCCGCTGCTGGCTGCCAGCGCGCGCGCACCATTGCTGCTCCCGCCGGCGGCC
AGCAAGCACCCGCACCAGCGTTTGCCGTTCCCCTACGGCCTTGCGGCCAGCGGCGGCACCGGCACGACGACCGAGTCCTC
CAGCGAGGAGCGGCGTGGGCCGTCGCCGGCACCGCGGAAGCGCTCCAGGACGACGTTCACGCGGGAGCAGAAGGAGCAGA
TGCTGGCGTTCGCGGAGCGCGTCGGGTGGAGGCTGCAGCGGCAGGACGAGGCGATGGTGGGGCATTTCTGCGCGCAGGCC
GGGGTCCGGAGGCAGGCGCTCAAGGTCTGGATGCACAACAACAAGCAGAGTAGCAGCGGTAGGAGGCAGCAGCAGCAGGA
GGAGGAGAAGCAGC---TTCAGGAGCATAGCCAAGA---GCAGCAGCAGTAGCCATGGCAGGAGACAGGTTCCATAGTA-
----GGAGGCAACGCTCCTCGCGCCCTTGTAAAGTTTTTAACTGTTGGAAAGTTCTTCTGTTCTTTTTCACTCTCTTCTA
ATTGGGCTGATCACTGTTGCTTCTCTGTCATATCAATGCATGATCATTCCTGGTAGGAGCATTGGTTGGATTGG------
----GATATTTCTTTTGGTTATTTGTCTGTGTGCATTTTTAAACT---ATATAGAGAAAATCACTTTCTACACAATGTAC
AGTACGCTGTATTTTATTTTAT--TTTATTTTGGAGTTGGTGTACTACGCTGTATTATAAGCCTTATTACTT--------
--------------------CATCAGCACGCTCATTCTGATAATCGCAACCGAAGTGAAAGCAGTTTCTATTGGATGGTT
AATTTTGCGTTTACCGAATCAGAATGGCTTGCCGAGGCATGGCCATG-GCCAGACAGCAACTGGATTATACCAGGCTTAA
TACAAGTGGACGGCTAGATTTCCACGCGGGACAGGTAATCGCATTGCTTGTTGTGTCCGCATCTGTTATCTTTGAGTTGG
ATTACAAGGATTTTGTTTGAAGGAATTGTGAGGACCATGGTGCGAGGGAGGAAAGGTTGACAAGGATGCCATGGGTTGGA
TACCCCTCAAGATAACAGGCAAGCAAAAAGGAAAGAAACTTCAACATCTTGAAATCTTGCACTATTCGCAGCTTATAAAT
TCTTGAGAAGAGTTCCACTCGAATCTTCATGAGGTGAAAAGGACAAATAACCACTAGTTTTATAAATATGGATTGAGCTA
TACGACCATATAAGTGAAGATTTGGACATTAAATCATAACTGGTTTAAAATGTAACGGCCCTAACAGAGTGGCGGCCATT
AATATGAGCACAAAATTCATTCCGGACAGAAAGTGCTATCAGAAATTCGCAGTCGGCCATAAGAACAAGGTACTCCCTCC
ATACAAATATATGTGGCATAA-
>SNPs
-------------S---------------S----S--------------S--------------S-S-------------
----------------------S---S------------S-------S-------------S------------------
------------S----------S---S-----SS--S------------------------------------S----S
---------S------S-S-------S--S------------S-------S----------SS----S-----S------
-------SS---------S------S--S-S----------S--------S------S---------------S---S--
------------SS-----SSS--SS------------SS-------------------------S----S-S-S-----
-----------------------------------------SS-------------------------------------
----------------------------SS---SS---------------------------------------------
-----S--S------------------------S--S-------------------------------------------
--------------S----------------------------S-S-SS-S-----------------------------
-------------S---------S-----------S--------------------------------------------
----------------S---------------------------------------------------------------
----------------------S--S------------------------------------------------------
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------------------------S-----S-------------------------------------------------
--------------S-----------------------------------------------------------------
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-------------------S----------S-------------------------------------------------
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--------------SSS-------------------SSS---------------------------S-------------
-------------S-------------------------------S----------------------------------
----------------------------------------S---------------------------------------
------------------------------------------SSS----------------S------------------
------S----------------------------------------------------------------------S--
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-----------------------------------------------------------S--------------------
-------------S------------------------------------------------------------------
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--------------------------------------------------------------S-----------------
-------------------------------------------------S--------S--------S------------
-----S--------------------------------------------------------------------------
-------------------S------------------------------------------------------------
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>forward_107
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-------TGGATATGGTCTTGCCGCAG-----------------------------------------------------
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>reverse_1718
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-------------------------------------CAGCAGCAGCAGTAGCCAT------------------------
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>forward_824
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----GCAGACTCTATCTCCGGCTC--------------------------------------------------------
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>reverse_1719
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--------------------------------------AGCAGCAGCAGTAGCCATG-----------------------
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>forward_986
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------CAGTTTGACAAGCACACGCG------------------------------------------------------
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>reverse_1881
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----------------------------------------CGATCATTCCTGGTAGGAGCA-------------------
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