>input_sequence_71115
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---ATGCCGAGGCAGGAGGTCCGTTCGGGCGTCTGTCGCATCGAAAACGACAAAAAACGCAATGCTGCGTTCACCAAGCG
GCATGCTCATTTGTTCAAAAGTGCTAGTAACCTCTCCGCCCTCACAGGCGTGAGGGTTGCTGTCATCCTAGAGAAGGAAT
CGGGAAAGATGCATGGCTTTGGGACGCCGTTAGTGCAACCCATTGTTGATTCTTTCCTGTCAGGAGATCCACTTGTCGAG
CCTCTTGTCGATGAACAAGTGAAAGATAGGATTGCATTGTTGCAGAGCGAGGTGGCTAGGTTGCACATGGAGAATGAAAT
GCTAAAAACGAGAGCAAACCTCTCACTCCAACACATCAAGAAGATCCAATCTCAGAATTCAGGGATGCCAGCAAATAATA
TCTTCTCCAAGGTAGAAGATCTTAGTCTTGAAGACCTAACCAACCTCTTCAATAACCTATTGCGAGTCAAGGAGGAAATT
AGACGACGTTTGCCTCCACTACAACATGGACATGAACCAAAGGTTGGTGGTCCAAACATGCGGCAAAACTGGTTGCTACC
AAGCGGTCCTTCACAAGATCACCCGAAGATTCATGAGACTTCACAGCAACCATTGTCATCCCACCATCTTCCACCTCAGG
TGATGCCTTTGGTTCTAGTACCAGCAACACCACAACA-------------------------------------------
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-------------------------------CCCAATTTACTTCCGTACTACAGTCAGTTGTTGA---------------
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>chr2D_1_TraesCS2D01G526200
AAGATATGCTCATGTAATCCTATATATATGCCCATGAGGCTCAAGCAGTAAACATC------------------------
GATTCCATCAATCCCCTCTCTATTGCTTCTATAATATATATACC-TCTCTTAGACACCGAAGTATTTAGAAGCCGTGATC
ATGTTAGGAAGAAAAAAACACTCCTAAGATTGTTGGAACACATGAA--------TTTTGTTCTACCAAATATCATGCAAT
TTACAAATAATT--AAATGTTAAATTTGAAATTTCTAAATTAAAATGTCATATAGAGAT------AAACAAGTCCACTAA
TAACCATGAGATCATAGGTA-GTTGGCAATACTGCATACTGAAAAGAGATATTCTAATAATTAATTGTTTGAATTGTCTA
TGAGACTAAATGTATTCATACCTATTAAGACATAGTTTTCAAGTATTAACCGAATTCTCAAATT-GACATATATGATTAG
ATGGCTACGATCGAGCGCACCAAATCCTAACTCATACTATGGATGTAGTTGCACTTAATAACAAAAAGAATTGGATAGAA
ACTATGACATGCATTTAAAAAAAGTTTGTTGGATGTGGATGAACTCAGGTAATGATACATCAATGAGTCTAAATATGGAT
ATCAATTAATGTATACGCGTACGATATATTTGGCCAACAATTAATGGTGGGCATAAGTTAGGCATTTGTCAATTATACAT
TTATTGCTCATTAAAGACTTGGCGGTTTGGATCTACTCAAAAATAAAGGAATGTAACTTTGGATCCTAATTAATTTGAAT
ATGTGGATAAGGATGTACACCAACTTATGATGTAAACTGTGAATTGTATAGAACATAGACAAACTTCATGTTTCTGGAGA
TGGCGTTTATGCTTTCATTTTCCTTCTATATAAGGGGGGGTTCACCTCCTCGTATCTCCAAGTAAACTGACATTAGCCAA
CAACAACTGGAAAGATATATCTTTTGGTAGATACTTGTAGCTTCCCATTTGTAGTAGCAAGTATTTCGGTTATCCATTTG
AGTATGCCGAGGCAGGAGGTCCGTTCGGGCGTCTGTCGCATCGAAAACGACAAAAAACGCAATGCTGCGTTCACCAAGCG
GCATGCTCATTTGTTCAAAAGTGCTAGTAACCTCTCCGCCCTCACAGGCGTGAGGGTTGCTGTCATCCTAGAGAAGGAAT
CGGGAAAGATGCATGGCTTTGGGACGCCGTTAGTGCAACCCATTGTTGATTCTTTCCTGTCAGGAGATCCACTTGTCGAG
CCTCTTGTCGATGAACAAGTGAAAGATAGGATTGCATTGTTGCAGAGCGAGGTGGCTAGGTTGCACATGGAGAATGAAAT
GCTAAAAACGAGAGCAAACCTCTCACTCCAACACATCAAGAAGATCCAATCTCAGAATTCAGGGATGCCAGCAAATAATA
TCTTCTCCAAGGTAGAAGATCTTAGTCTTGAAGACCTAACCAACCTCTTCAATAACCTATTGCGAGTCAAGGAGGAAATT
AGACGACGTTTGCCTCCACTACAACATGGACATGAACCAAAGGTTGGTGGTCCAAACATGCGGCAAAACTGGTTGCTACC
AAGCGGTCCTTCACAAGATCACCCGAAGATTCATGAGACTTCACAGCAACCATTGTCATCCCACCATCTTCCACCTCAGG
TGATGCCTTTGGTTCTAGTACCAGCAACACCACAACA-------------------------------------------
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-------------------------------CCCAATTTACTTCCGTACTACAGTCAGTTGTTGACCATGCAAAGGATTT
ACCTCCACCACTTCAACCACAATTTCAATACTATGCAAGTCCTAACACAATAACAAAGCCATTGCAGAACAACATGAGCC
CTAACTCAATTGTTGAGAACACTGTGGATGAATCCCCACGGTTTTTCTACTCCGGTGGTAATGACACTTACGTCCATGAA
TCATTCAGCTATGATAACTTGTCTAATGCTCCTTTGGACAAGGCGCATGAAATTCTAGGGATGGATTCTTACTTGGACTA
TAATATTAGTGATCTAGAGCAATATAAAATGGATTGTGTTGAGTGGGCCAATAATGCACCACCAGGCTCTTCCGGTGGGA
ATGATGATGATATTGATGGATGATTTCGAGGACTACTTTAGATGTCGGTTGGTGATTTCATTTGAATTACATCAAGGGAA
TAAGATATTATATTTCCATTAGGTGTCATTGTCTATTGTACTAT--------------------------------TTTT
TCAAGCTTCCTCGAGGCAACAGTACACATTTCATGTTTAGGGCATTATGTAATGGAGTTTATTTCAATATGACTAATTTT
CTATAATGTTTGGAGTTCTTCTTGTTGATTGAGTAGTTATCATTTTTTT-ATTGAGGAACAACATGGCATTTTTGCTTTC
TCTATTGATGAACAAGAGGA-TACATTATGTTTCACAATTATGTTACACTTAAGTAACACATTTCAAAACTTCTCATTTC
CAATAAAGCCATGAGGTATGCTTGTGAAACAACTAAAAGCTGAAATAAGTCCATACTACAACTTAGACATGATCGACTAG
CCACAAATGATAACAGCCAATGTGAGATTCATGTGGGATAATGGTAAGTTGAAAATGCGCACCTGCATGTGAAAACAAAA
GCGTGTG------------------TGAATATGCACCCACACGTGGATATGCAACCACAACATTAATAGA----ATATAG
CCACCGTTACCAACATAAAATACGCATCCGCACATGGACACATGTCTCCTTCAAGTTAATGTAAATTGATTTATTCTTAA
T
>chr2B_1
AAGATATGCTCATGTAATCCTATATATATGTCCATGAGGCTCAAGCAGTAAACACCGATTCCATCAATCCCCTCTCCATT
GATTCCATCAATCCCCTCTCTATTCCTTCTATAATATATA--CC-TCTCTTAGACACCGAAGTATTTAGAAGCCGTGATC
ATGTTAGCAAGAAAATAACACTTCTATGATTGTCGGAACACATGAC--------TTTTGTTCTACCAAATATCGTGCAAT
TTACAAATAAG------TGTTAAATTTGAAATTTCTAAATTAAAATGTCATATAGAGAA------AAACAAGTCCATTAA
TAACCATGAGATCATAGGTATGTTGGCAATACTGCATACTGAAAAGAGATATTCTAATAAGTAATTTTTTGAATTGTATT
AACCTA-----------------ATTAAGACATAGTTTTTAAGTATTAACCTAATTCTCAAATT-GACATATAAGATTGG
ATGGCTACGATCGAGCGCACGAAATCCTAACTCATACTATGGATGTAGTTGCACTTAATAACAAAAATAATTGGATAGCA
ACTATGACATGCATTTTAAAAAAGTTTGTTGGATGTGGATGAACTCACGTAATGATACATCAATGAGTCTAAATATGGAT
ATGAATTAATGTATATGCGTATGATATATTTGGCCAACAATTAATGGTGGGCATAAGTTAGGCACTTGTTAATTATACAT
TTATTGCTCATTAAAGACTTGGCGGTTTGGATCTGCTCAAAAAGGACGGAATGTAACTTTGGATCCTAATTAATTTGAAT
ATGTGGATAATGATTGACACCAACTTCTAATGTAAACCATGAATTGTATAGAACATAGAGAAACTTCATGTTTCTGGAGA
TGGCATTTATGCTTTCATTTTCCTTCTATATAAGGGGGG-TTCACCTCCTCGTATCTCCAAGTAAACTGACATTAGCCAA
CAACAGCTGGAAAGATATATCTTTTGGTAGATACTTGTAGCTTCCCATTTGTAGTAGCAAGTATTTCAGTTATCCATTTG
AGTATGCCGAGGAAGGAGGTCCGTTCGGGCGTCTGTCGCATCGAAAACGACAAAAAACGCAATGCTGCGTTCACCAAGCG
GTATGCTCATTTGTTCAAAAGTGCTAGTAACCTCTCCGCCCTCACAGGCGTGAGGGTTGTTGTCATCCTAGAGAAGGAAT
CGGGAAAGATGCATGGCTTTGGGACGCCGTTAGTGCAACCCATTGTTGATTCTTTCCTATTAGGAGATCCACTTGTTGAG
CCTCTTGTCGATGAACAAGCAAAAGATAGGATTGCATTATTGCAGAGCGAGGTGGCTAGGTTAGACATGGAGAATGAAAT
GCTAAAGACGAGAGCAAACCTCTCACTTCAACACATCAAGAAGATCCAATCTCAGAACCCAGGGATGCCAGCAAATAATA
TCTTCTCCAAGGTAGAAGATCTTAGTCTTGAAGACCTAACCAACCTCTTCAATAACCTATTGCGAGTCAAGGAGGAAATT
AGACGACGTTTGCCTCCACTACAACATGGACATGAACCAAAGGCTGGTGGTCCAAACATGCGGCAAAAATGGTTGCTACC
AAGCGGTCCTTCACAAGATCACCTGAAGATTCATGAGATTTCACGCCAACCATCGTCATCCCACCATATTCCACCTTAGG
TGATGCCTTTGGTTCTAGTACCAGCAACACCACAACACAGTGTGGAACCACATTTTCCTATGCATTTACCAGAGATGTTT
CAGTCCCCACCATCACCTTTGGCACCCCATTTGGCGTCCCTCCTACAACCAGTTCCCGATCAGGTATCAGACTTCAATCC
ACCTCTTTAGCCACAACCATAGAACTATGCAAGTTCTTAACACAAAATAGAACCACATTTTTACCATGTAGGTACCACAA
ATCTTCC-------------------------------------------------------------------------
----------------------------------------------------------------------------AGCC
CTAACTCAATTGTTGAGAACACTGTGGATGAATCCCCACGGGTTTTCTACTCCGGTGGTAATGACACTTACATCCATGAA
TCATTCGGCTATGATAACTTGTCTAATGCTCCTTTGGACCAGGCGCATGAAATTCTAGGGATGGATTCTTACTTGGACTA
TAATATTAGTGATCTAGAGCAATATAAAATGGAATGTGTTGAGTGGGACAATAATGCACCACCAGACTCTTCCGGTGGGA
ATGATGATGATATTGATGGATGATTTCGAGGACTACTTTAGATGTCGGTTGGTGCTTTCATTTGAATTACATCAAGGCAA
TAAGATATTATATTTCCATTAGGTGTCATTGTCGATTGTACTAT--------------------------------TTTG
TTAAGCTTCCTTGAGGAAACAATACACATTTCATGTTTAGGGCATTATGTCATGAAGTTTATTTCAATATGACTAATTTT
CTATAATGTCAGGAGTTCTTCTTGTTGATTGAGTAGTTATCATTTTTTTTATTGAGGAACAAGATGGCATTTTTGCTTTC
TCTATTGATGAACAAGAGGA-TACATTATGTTTCACAATTATGTTACACTTAAGTAACACATTTCAAAACTTCTCATTTC
CAATAAAGCCATGAGGTATGCTTGTGAAACAACTAAAAGCTAGAATAAGTCCATACTACAACTTAAACATGATCGACTAG
CCACAAATGATAACAACCAATGTGAGATTCATGTGGGACAATGGTAAGTTGAAAATGCACACCTGCATGTGAAAACAAAA
GTGTGTG------------------TGAATATGCACCCACACGTGGATATGCAACCACAACATTAATAGA----ATATAC
CCACCGTTACCAACATAAAATACGCATCCGCAAATGGATACATGTCTCCTTCAAGTTAATGTAAACTAATTTATTCTTAA
T
>chr2A_6
ATGG-----TCATGTACTCCTGTATATATGACCAGGAGGCTCAAGCAATAAACATC------------------------
GTTTCCATCAATCCCCCCTCTATTCCTTCTACAATATATA--CCCTCTCTTAGATGCCAAAGTATTTAGAAGCCATGATC
ATGTTAGGAAG-AAATAACACTCTTAAGATTGTCGGAACACATGACATGTTTAATTTTGTTCTACCAAATATCATGCAAT
TTACACAATAATTAAAATGTTTAATTTGAAATTTCTAAATTAAAATTTCACATAGAGAGTGAGAGAAACAAGTCTACTAA
TAACCATGAGATCATAGGTATGTCGGCAATACTACATATTGAAAAGAGATGTTCTAATCAGTAATTGTTTGACTTGTCTA
TGAGACTAAATGTATTCTTACCTATTAAGACATAGTTTTCAAGTAGTAACTCAATTGTCAAATCAGACATATAAGATTGG
ATGGCTACGATTAAGCGCACCAAATTCTAACTCATACTATGGATGTGGTTGCACTTAATAACAAAAAGAATTGGATAGCA
ACTATGACATGCATTTAGAAAAAGATTGCTGGATGTGGATGAACTGACATAATGATGCACGCGTACGATATATTTGGA--
------TAATGTACACGTGTATGATATATTTGGCCAACAATTAATGGTAGGCATAAGTTAGGCATTTGTTAATTATACAT
TGATTGCTGATTAAAGACTTGACGGTTTGGATATACTTAAATAGAAAGGAATGTAACTTTGGATCCTAATTAATTTGAAT
GTGTGGATAAGGATGTACACTAACTTCTGATGTAAACCGTGAATTGTATAGAACATAGACAAGCTTCATGTTTCTGGAGA
TGGTGTTTGTGTTTTTATTTTCCTTCTATATAAGGGGGG-TTCACCTCCTCGTATCTCCAAGTAAACTGATGTTAGCCAA
CAACAACCGGAAAG--ATATCTTTTGGTAGATACTTGTAGCTTGCCATCTGTAGTTGTAAGTCCTTCAGTTATCCATTTG
AGTATGCTGAGGCAGGAGGTCCTCTTGGGGGTCTGTCGCATTGAAAACGACAAAAAACGCAATGACACGTTCACCAAGCG
GCATGCTAATTTTTTCAAAAGTGCCAGTAACCTCTCCGCTCTCACGGGCGTGAGGGTTGCTGTCATCCTAGAGAAGGAAT
CGGGAAAGATGCATGGTTTTGGGATGCCGTTAGTGGAACCCATTGTTGATTCTTTCCTGTCAGGAGATCCACTTATCGAA
CCGCTTGTCGATGAACAAGCGAAAGATAGGATTGTATTGCTGCAGAGAGAGGTGACTAGGTTGGACATGGAGAATGCAAA
GCTAGATACGAGAGCAAACCTCTCGCTGCAACACATCAAGAAGATCCAAGCTCAGAACCCAAGGTTGCCAGCAAATAATA
TCTTCTCCAAGGGAGAAGATCTTAGTCTTGAAGACCTAACCAACCTCTTCAATGCCCTCTTGCGAGTCAAGGAGGTAATT
AGACGACGTCTGCCTCCACTACAACATGGCCATGAACCAACAACTGGTGGTCCAAACGTGCGGCAAAACTGGTTGCTACC
AAGTGGTCCTTCACAAGATCACCCACAGATTCATCAGACTTCACAAAAACCATCTTCATCCCACAATCTTCCACCTCAGG
TGATGCCTCCAGTTCTAGTACCATTAACACCACAACGCACTATGGAACCACATTTTCCTATGCATTTACCACATATGTTC
TAGTCCGTACCATCACCTTTAGCACCCGATTTGGCGTCCCTCCGACAAGCAGTTCCTGGTCACGTATAAGATTTCCATCC
ACCTCTTTATCCACACCTTTAGAACTATGCAAGTCCTTAACACAAAATAGAACCACCTTTTTACCATGCAAGTGCCACAA
ATGTTACAGTCTACATCACCACCTTTAGCTCCCCAGTTTACCTCCGTCCTACAATCAGTTGTTGACCATGCAAAGGATTT
ACCTCCACCACTTCAACCACAACTTCAAGACTATGCAAGTCCGACAAG---------GCCATTGCAGAACAACATGAGCC
CTAACTCAATTGTTGAGAACACTATGGACAAATCCCCACAGTTGTTCTACTCCGGTGGTAATGACACTTTCATCCATGAA
TCATTCGGCTATGATAACTTGGCTAATGCTCCTTTGGACCAGGCGCATGAAGTTCTAGGGATGGATTCTTACTTGGACTA
TAATATTAGTGATCTAGAGCAATATAACATGGAATGTGATTAGTGGGTCAATAATGCACCACCAGAATTTTCCGGTGGGA
ATGATGATGATATTGATGCATAATTTGGAGGACTACTTTAGATGTCGGTTGGTGCTTTCATTTGAATTACATCAAGG---
---GATATTATATTTCTATTAGGTGTCATTGTTGATTGTCGATTGTACTATTAGTTGTCATTGTCGATTGTACTTCTTTA
TTAAGCTTCTTGGAGGCAATAATACACATTTCATGTTTAGGGCATTATGTCATGAAGTTTATTCCAATATGACAAAATCT
CTATAATGTTTGGAGTTCTTCTTGTTGAATGAGTAGTTA--ATGTTTTTTATTGAGGAACAATATGTCATTTTTGCTTTC
TCTATTGATGAACAAGAGGAATACATTATGTTTCACAATTATGTTACGCTTAAGTAACACATTT-AAAACTTCTAATTTC
CAATAAAGCCATGAGGTATGCTTGTGAAACAACTAAAATCTAGAATAAGTCAATACCACAACTTAGACAT----GACTAG
CCACAAATGATAACAACCAATGTAATATTCATGTGGGACAATGGTAAGTTGAAAATGCACATGTGCATGTGAGAACAAAA
GTGTGTGCGAATACGCAACCACACGTGAATATGCACCCACGCATGGATATGCGACCGCAACATTACTATATAGCATGTAC
CCACAGCTACCAACATAAAATACGCATCCGCATGTGGACACATGTCTCCTTCAAGTTAGTGTAAACTGATTTATTCTTAA
T
>SNPs
------------------------------S-------------------------------------------------
------------------------S---------------SS--------------------------------------
---------------S-----------------S-----------S----------------------------------
----------S-----------------------------------------------S---------------------
------------------------------------------------------------S-------------------
-----------------S---------------------------------S---------------------S----S-
------------------------------------------------------------------------------S-
-----------------------------------------------S--------------------------------
--S------------------S-----------------------------------------------S----------
-------------------------------------------S------------------------------------
--------------------------S----------S------------------------------------------
---------------------------------------S----------------------------------------
-------------------------------------------------------------------S------------
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-------------------S-------------------------------------------S----------------
------S--------------------S-----------------------------SS---------------------
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-------------------------------------------S------------------------------------
---------------------------------------------S-------S--------------------------
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-----------------------------------S-----S-----S-----S--------------------------
----------------------S-----S-------------S-SS-SSSSSSSSSS-----------------------
-----------------------------------------------------------------------S--------
------S--------------------------------S----------------------------------------
---------------------------------S-------------S-----------------S--------------
------------------------------------------------------S----------------------S--
---------------------------------S---------------------------------------------S
-S---------S---------S----------------------------S---S-------------------------
--------------------------------------------------------------S-----------------
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-----------------------------------------SS-------------------------------------
---------------S----------------------S-------------------S---------------------
-S-----------------------------------------------------------------------------S
--------------------------------S--------------------------------S--------------
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>forward_608
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--------------------------TGTTGGATGTGGATGAACTCAG--------------------------------
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>reverse_2480
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-------------------------------------------------------------------------------T
TCAAGCTTCCTCGAGGCAA-------------------------------------------------------------
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