>input_sequence_71111
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-------------------------------------------------------ATGCAGAGAAAAACGAACTTCAAGC
CTCCAGCGATCTCGACCGCCAGAGCCCCCGGAGCCCACACACCCGCCGGCGTGTCGCCGCCTTCGTCGATCAAGAGCAAC
ACCGACGTGGCGCTGCCGGAGTTGGAGCAGCGCGTCAAGGTGTCGCCACCGCCGCCGTTCGCGTCGGACAGGTGGGCTGC
GGGCGGCGCCTCGTCCTCCGACGAGGAGGAGGACACCAAGAAGACCAAGAACAAGAAGGCCGCGACCGGCAAGACGGTGC
CGGCAAGGAAGAGCGGCAAGGCCAAGGGCAAGGACAGGTACCTCGTTGCGCCAAAGGCAGAAGCTGACCAGGAGTTCATG
CCCGCAGGGGT---CCCCGACCCGTTCGCCGACAACGACGCGCCCCCGCCCTCCTCGTTCGACCCGTTCGCCGAT-----
-------GACGCTGCCGGGGGCGGCGCTGGGGTCGACGAAGCCTACGTGCACCTCCGCGTGCAGCAGCGCAATGGCAAGA
AGACGCTGACCACGGTGCAGGGGCTCAGCGCCAGCTACAACTACGCCAAGGTGCTGCGGGACCTCAAGCGGGAGCTCTGC
TGCAACGGCACCGTCGTCGAGGACAAGGAGCTCGGCAACGTCATCCAGCTGCAGGGCGACCACCGCAAGCGCGTCGCCGG
CTTCCTCGCCAAGGCCGGCCTAGCCAAGACGGAGTGCATCAAGGTCCACGGCTTCTAA----------------------
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>chr2B_1_TraesCS2B01G498100
AAAGACTTGTCTTCTCTTATTTAAGAGAAGACAAGAGATGATCTCTTAGGGCCTGTTTGGTTTCAATAAGTCACCTGACT
TATAAGTCAGGTGACTTAAAACCAGTGACTTATAAGTCATGCCTGTTTGGTTGTCACCTGACTTATAAGTCACCTGACAC
ACCTTTCCACACCAATCAACATCATGCAGGTGGTGGGACCCACGCAAAAGGGGGTGACTTATAAGTTTTAAGTTGGGGTG
AAGCAACTTATGACTTATAAGTTGGGGTGACTTATAAGTCGGGTCTGTTTGGCAAAATAAGTTACTTTTTTCACTTTTCG
ACTTATAAGTTGGTGACTTATTTGGAACCAAACAGGCCCTTAGCATAATATGTCTCACCATGTTTTTAGGAATAACTAGT
TACTGAAGATAAGGCTAAGGCATGACCCATTGTAGACGTCTTTTTTGTCATCTTTAAATTACATGCAAGACTTAAGATAA
GACTATCTTATCAACCATTGTACATGCCCTAACGTTGAGACACTTATTTTAGGAAGTAGGGATTATAAGCTTACTTGTAG
TAGAATACAAGTTTGTTTGAATACAGCTAC-TATAGGCTCCTCGCAAAAATAAAG---------AGAATACAGCTATAGA
CCAAGAAAAGAAAGAGTCTGCATACATATCCAGAGTCAGCTTCCTTGGCCTCCAATGTTTCTCCTGCCTACCTCGGTTGG
CCTCGCTTCACGCGCTTCCTTAGAAACAGGAACGATTCGGGAGAGAGGGGGGAGAGAAACCGTGCCGTGCGTGGGTGCCA
AGTTTCGTTCCTTCCCCAGCTGGCACGATCAGCGCCGTCTGCAACTGTACATGCACCACTGGACGGCCAAGATCCACCCG
TT---AGACGTGTCCTGCACCAGTACGCCAACCCAACCGACTCGGGGTCTGCTTCCGTGTCCCGCACGAACTCCCCTCGA
CCGATTCCACCAGTCCACCAATAAATACCCAT-CGTGGCCTCCCCCGGA-AGCATATGCAGAGAAAAACGAACTTCAAGC
CTCCAGCGATCTCGACCGCCAGAGCCCCCGGAGCCCACACACCCGCCGGCGTGTCGCCGCCTTCGTCGATCAAGAGCAAC
ACCGACGTGGCGCTGCCGGAGTTGGAGCAGCGCGTCAAGGTGTCGCCACCGCCGCCGTTCGCGTCGGACAGGTGGGCTGC
GGGCGGCGCCTCGTCCTCCGACGAGGAGGAGGACACCAAGAAGACCAAGAACAAGAAGGCCGCGACCGGCAAGACGGTGC
CGGCAAGGAAGAGCGGCAAGGCCAAGGGCAAGGACAGGTACCTCGTTGCGCCAAAGGCAGAAGCTGACCAGGAGTTCATG
CCCGCAGGGGT---CCCCGACCCGTTCGCCGACAACGACGCGCCCCCGCCCTCCTCGTTCGACCCGTTCGCCGAT-----
-------GACGCTGCCGGGGGCGGCGCTGGGGTCGACGAAGCCTACGTGCACCTCCGCGTGCAGCAGCGCAATGGCAAGA
AGACGCTGACCACGGTGCAGGGGCTCAGCGCCAGCTACAACTACGCCAAGGTGCTGCGGGACCTCAAGCGGGAGCTCTGC
TGCAACGGCACCGTCGTCGAGGACAAGGAGCTCGGCAACGTCATCCAGCTGCAGGGCGACCACCGCAAGCGCGTCGCCGG
CTTCCTCGCCAAGGCCGGCCTAGCCAAGACGGAGTGCATCAAGGTCCACGGCTTCTAAGCCG--ATCTCCATAGAGTTT-
----GTTTATCGGGTTTGCTGTTTGGTGATTTGATTTCTGTGTGAGTCTG-------GCCATAATGGCTTGCGGTCGTCG
GGTTAAATCGTGTAAGGGGTCACTTTTTGCTATATCAATAATAATGCAGACTTTTATAATACTTAACACTATTCGGAAAA
TTACCTATGAATTTCGAGCAATTTTCGCATGACATATGGTGATTT-GGATCTTTAAAAAA------TTTTCATGACAACC
GGAGGAAATTTTCCATACAATTTGTGGGTATGTCAAATCTCATAGACTTAACTACTTCAAGTCAATACAGTGCTCACTTT
TCGTAATTTTTACATGCCAGTTTCATATTTTTACATGCCAGTACATAATAGTCTAAATGGCATATAACAGTCTGACCACA
GTGCCCGCCTGTAAGAAGCTTACATTTTATTTGACAGGAAAGTTTAGAAGAAAAAAACGCGCACCCGCAGGTAAAGTGCC
AGGCCGTTCACAGCGCGCCTCCGCTGCCGCTGCGTCCGAGGGCTCATATTATGTCTCGCTTGCTGTTGTGAGTCCTTATT
TATTCTTATGACAAATTTAACTATGATTTTCAGCTTATGGTGCAGTGCTCAATACTAAGATGAAGAGAAAAAAAAA-TTA
TAACAGTAAAATAGAAG---AACTCCTACAAATATACTTGTTACACACAGGTAATATTGA--------------------
------------------ACTAATTAGCGAAATCGAGCGGCCAGTTCTCAC--ATACATCCATGCAGTTTTGTGGTCCAA
AATTTTATCTTTATATATGCGTGACGTGGCATATAGTAATGGAATATTCACGTGAGCAAGAGATTCCTTGTCTGATGGGT
GTGAATGTTGCATTTACTTTGGGTTTTCAAATTTTTAAAAAGTCATATCTTTCAAACCGCGCATCAAAACTCGGATCTGT
CTTCACCATGGATTCCTTGAGGCGATATCTTTAAAACTAGATCCCGCATGAGTATCTTTCGATGAAATTTTTTCAATACC
AAT
>chr2A_505
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------------------------TGCACTAACATCGAGACACTTATTTTGGGACGTACGGATTATAAACTTACTTGTAG
CAGAATATGA-TTTTTTTAAATACAGCTATATATAGGCTCGCCGCAAAAAAAGAAAGAAAGAAAAGAATACAGCTATAGA
CGAAGAAAAGAAAGAGTCTGCATA----TCCAGAGTCAGCTTGCTTGGCCTCCAATGTTTCTCCTGCCT----------G
CCTCGGTTCACACGCTTCCTTCGAAACATGAACGATTCGGGAGAGAGGGAGGAGAGAAACCGTACCGTGTGTGGGTGCCA
AGTTTCGTTCCTTCCCCAGCTGGCACGATCAGTGCCGTCTGCAACCGTACACGCAGCACTGGACGGCCAAGATCCACTGT
ACGTGAGACGTGTCCTGCACCAGTACGCCAACCCAACCGACTCGGGCTCTGCTTCCGTGCCCCGCACGAACTCCCCTCGA
TCGATTCCACCGATCCACCCATAAATACCACGCCGCGGCCTCCCCTAGC-ATCATATGCAGAGAAAAACGAACACCAAGC
CTCAAGCGATCTCGAGCGCCGGAGCCCCC---------AAACCCGCCGCCGTGTCGCCGTATTCGTCGATCAAGAGCAAC
ACCGACGTGGCAGCGTCGGAGTTGGAGCAGCGCGTCAAGGTGTCGCCACCGCCGCCGTTCGCGTCGGACAGGTGGGCAGC
GGGCGGCGCCTCGTCCTCCGACGACGAGGAGGACACCAAGAAGACCAAGAACAAGAAGGCCGCGGCCAGCAAGGCGGTGC
CGGCGAGGAAGAGCGGCAAGGCCAAGGGCAAGGACAGGTACCTCGTTGCGCCACCGGCAGAAGCTGACCAGGAGTTCATG
CCCGCAGGCGGCGCCCCCGACCCGTTCGCCGACAACGACGCGCTCCCGCCCTCCTCGTTCGACCCGTTCGCCGACGCGCG
CGCCGACGACGCGGTTGC---CGGCGCCGGGGTCGACGACGCCTGCGTGCACCTCCGCGTGCAGCAGCGCAATGGCAAGA
AGACGCTGACCACGGTGCAGGGGCTCAGCGCCAGCTACAACTACGCCAAGGTGCTGCGGGACCTCAAGCGGGAGCTCTGC
TGCAACGGCACCGTCGTCGAGGACAAGGAGCTCGGCAACGTCATCCAGCTGCAGGGCGACCACCGCAAGCGCGTCGCCGG
CTTCCTCGCCAAGGCCGGCCTCGCCAAGACCGAGTGCATCAAGGTCCACGGCTTCTAAGCCGAGATCTCCAGAGAGTTTA
GTTTGTTTATCGGGTTTGCTGTTTGGTGATTTGATTTCTGTGTGATGTGTGAGTCTAGCCATAATGGCTTGCGGTCGTCG
GGTTAAATCGTGTAAGGGGTCACTTTTTGCTATATCAATAATAATGCAGACTTTTACAATACCTTACTCTATTCGGAAAA
TTACCTACGGATTTCGAGCAATTTTCACATGACGTATGGAGATTT-GGATCTTTAAAAATTGTACTTTTTCATGACAACC
AGAGGAAATTTTTCATCCA-------------------------------------------------------------
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>chr2D_909
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-----------------------------------------TCCGGCTCTGCTTCCGTGTCCCGCACGAAC-CCCCTCGA
TCGATTCCACCAATCCACCCATAAATACCCCGCCGCGGCCTCCCACCAGGAGCATATACAGAGAAAAACGAACACCAAGC
CTCAAGCGATCTCGAGCGCCAGAGCCCCC---------ACACCCGCCGCCGTGTCGTCGCCTTCGTCGATCAAGAGCAAC
ACCAACGTGGCTCCGCCGGAGTTGGAGCAACGCGCCAAGGTGTCGCCACCGCCGCCGTTCGCGTCGGACAGGTGGGCCGC
GGGCGGCGCCTCGTCCTCCGACGAGGAGGAGGACACCAAGAAGACCAAGAACAAGAAGGCCGCGGCCAGCAAGGCGGTGC
CGGCGAGGAAGAGCGGCAAGGCCAAGGGCAAGGACAGGTACCTCGTTGCGCCACCGGCAGAAGCTGGCCAGGGGTTCATG
CCCGCAGGCGGCGCCCCCGACCCGTTCGCCGACAACGACGCGCTCCCGCCCTCCTCGTTCGACCCGTTCGCCGACGCGCG
CGCCGACGACGCTGCCGGGGGCGGCGCCGGGGTCGACGACGCCTACGTGCACCTCCGCGTGCAGCAGCGCAATGGCAAGA
AGACGCTGACCACGGTGCAGGGGCTCAGCGCCAGCTACAACTACGCCAAGGTGCTGCGGGACCTCAAGCGGGAGCTCTGC
TGCAACGGCACCGTCGTCGAGGACAAGGAGCTCGGCAACGTCATCCAGCTGCAGGGCGACCACCGCAAGCGCGTCGCCGG
CTTCCTCGCCAAGGCCGGCCTCGCCAAGACCGAGTGCATCAAGGTCCACGGCTTCTAAGCCG--ATCTCCATAGAGTTTA
GTTTGTTTATCGGGTTTGCTGTTTGGTGATTTGATTTCTGTG-------TGAGTCTAGCCATAATGGCTTGCGGTCGTCG
GGTTAAATCGTGTAAGGGTTCACTTTTTGCTATATCAATAATAATGCAGACTTTTACAATACCTTACTCTATTCGGAAAA
TTACCTACGAATTTCGAGCGATTTTCACATGACGTATGGAGATTTTGGATCTTTAAAAATTGTACTTTTTCATGACAACC
AGAGGAAATTTTCCAT----------------------------------------------------------------
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>chr2D_2236
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----------------------------------------------TATTATGTCCCGCTTGCTGTTGTGAGTCCTTATT
TATTCTTGTGACAAATTTAACTATGATTTTCAGCTTATGGTGC-----TCAATACTAAGATGAAGAGAGAAAAAAATTTA
TAACAGTAAAATAGAAGGATAAGTCTTATAAATATA--TGTTACACACAGTTAATATTGGACAAATAAAATATCATGAAT
TCTAAAAAGTGTGAACGCACTGATTAGTGAAATTGAGCGGCCGGTTCTCACATATACATGCATGCAGTTTTGTGGTCCAA
ATTTTTGTCTTT----ATGCGTGACGTGGCACATAGTAATGGAATATTCACGTGAGTAAGAGATTCCTTGTCTGATGGGT
GTGAATGTGCG-TTTACTTTGGGTTTTCAAATTTTTTAAAAGTCATATCTTTCAAACCGCACATCAAAATTCGGATCCGT
CTTCACCGTGGATTCCTCGCGGCGATATCTTTAAAACTAGATCCCGCATGAGTATGTTTCGATGAAATTTTTTGAATGCC
AA-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS---S-----S-S--------------S---S---S---------S-----------
S------SS-S---S---S----------S----------SS--------S-S-S-------------------------
-S----------------------SSSS--------------S--------------------------SSSSSSSSSS-
-----S-----S---------S------S--------------------S-------------S-----S----------
--------------------------------S------------S-----S---S---------------------SSS
SS--------------------------------------------S---------------------------------
S-----------S------S----------SS---S----------S-S------------------------SS-----
---S-----------S-------------SSSSSSSSS----------S-------------------------------
-----------S-S---------------------------------------------------------------S--
----------------------------------------------------------------S--S-----S------
----S------------------------------------------------SS-------------------------
--------S-S--------------------------------S------------------------------S-----
---------------------------S-----------S----------------------------------------
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---------------------S--------S-------------------------------------------------
---------------------------------------------SSSSS------------------------------
--------------------------------------------------------S-----S-S--S------------
-------S------------------S------S-----S-------------------S--------------------
S---------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------------------------
-------S-----------------------------------SSSSS--------------------S-----------
----------------------S--S--S-------SS------------S--------S--------------------
---------------------S-----S-----S--------S----------------S--------------------
-S----S-----SSSS---------------S------------------------S-----------------------
--------SSSS------------------------S-----------------------S--------S-------S--
-------S---------S-S-----------------------------------S-----------------S---S--
--S
>forward_360
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--------------------TTTGGAACCAAACAGGCCCT----------------------------------------
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>reverse_2163
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--GCCCGCCTGTAAGAAGCTTA----------------------------------------------------------
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