>input_sequence_71100
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--------------------------------------------------------------ATGATGAAGCACTTCACG
CCAGTGTTGGCTTCCTTACTCGTGGTCGCCGGCCTCG-------------------------------------------
------------------CCACCACGGCAGCCGGCGTGAGGTTCACGGCAATGAACAACGCGTCGACGACCCCCGGCGGG
CAGCGCTTCGACGAGGAATACGGCGTGGGGTACGCGGTGCAGGTCATGTCGGAGGCCTCCTTCTTCACCTGGAAAATCTT
CAACCAGACGGCGCCCGAGGACCGCCGAGCCGCCAT------GGACGACCGCGTCAAGCTCGTCGTCAACTTCATAAACA
CCAACATCCTCGCCTTCGAACGCGACAGCGAGAGCAGCATCACGCTCAACGCGGGCTACGTGAACAACATCACCGGCGAC
GTGAGGACGCTGGTGACGGGGCTGCTGTACCACGAGGTGACGCACGTGTGG-----------------------------
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--------CAATGGGGGCAGCAGGACACGAACCAGACTCACAGTTGGATCTACGA-------------------------
-----GGGGATGGCCGACTTCGTCCGGCTGCGTGCCGGCTATGCGGCGCCGTACTGGTTGCAGCCGGGGCAGGGGGACAG
CTGGGACACGGGCTATGACGTGACGGCGTGGTTCCTGGACTACTGCGACCAGCTGAGGCCGGGGTTCATGGCGGTGCTCA
ACCAGA--------------------------------------------------------------------------
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------------------GGCTCAAGGACGGCTACAGCGACGACGACTTCCTGCAGATTATGGGCAAGTCCGTGCAGGAG
CTGTGGAGGGATTACAAGGCCAAGTACGGCGGCTAG--------------------------------------------
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>chr1A_1_TraesCS1A01G431700
GTGTTAATTAATTCACCGGAAAGATTTGGAAAGTGCTAGTCTCCTCTAATCCATATATTAGAAAAAAATACTCAAGCTGA
CAAGCTTAACCACATTTAATTTGATTTTTTTAAAATCAAAAGCCATAACTTTAAACCAAACATCGGAATTAAGATCTATT
TTAACCGTTGGAATCCTCACAATGTGTTCTTTGAAACTAGATTCCGCATGAGTCTAAACCATGGAAATAAAGCCCCTAAA
AGGTATGAAAATATGAAACATGGATAATAGAAAGCACACAATCGATGCTAAGTCCCCTAGAAGC-----------TACAT
GGATGGATCAGCTAGCCTCCCTACTTGGCCTTGTAATCCCTCCACAGCTCCTGCACGCACTTGCCCATAATCTTCACGAA
GTCTTCGTCGCTGTACCCGCCCTTGAGCCGATTTGTAGGGCTTCTTTGATTTAAAGGAATTTTATAAGATTTTCGAAGGA
TTGAAATCCTTAGGATTTTTTTATGTTAGTCCTTTAATTCATATGATTGAATCTCATAGGAATTTTTTATATGAAATCTT
TTGTACTATATTTTATAGAAAATCTAACATGCACTCCAACCTTTTTTTACGATTCCTTTATTTTTCCTGCGTCATCAAAC
ACTCATTGCTAATCTAATAGGATTCAAATGGGCATACAACTTTAACCTTATACTTTTCGTATTACTACGTTCTCAAAATC
CTACGAATCAAAGATGCCCTTAGCCGATTTATGGGGTGCTCGTGAGAGCAATACTACAAATGCAGGACAAAGGTGACGAA
CGCAAGTACGATATGCTGACTGCTAGTAACAGAATAATCAAGAAGGTGATGATAAGTATTTATTGTCACTGTTGAACTAG
TTTCAACTAAGGATTCTATCTAGCA-TTATATTAGTAAAACCTGCCGGCTTGGCCTTAG----------TGTCACTTGTC
AAGGATGTGCCTATAAATTTGAGGCCGGTCGGCCACTCATCCACTCAGACACAAGCTAAATCATGATGAAGCACTTCACG
CCAGTGTTGGCTTCCTTACTCGTGGTCGCCGGCCTCG-------------------------------------------
------------------CCACCACGGCAGCCGGCGTGAGGTTCACGGCAATGAACAACGCGTCGACGACCCCCGGCGGG
CAGCGCTTCGACGAGGAATACGGCGTGGGGTACGCGGTGCAGGTCATGTCGGAGGCCTCCTTCTTCACCTGGAAAATCTT
CAACCAGACGGCGCCCGAGGACCGCCGAGCCGCCAT------GGACGACCGCGTCAAGCTCGTCGTCAACTTCATAAACA
CCAACATCCTCGCCTTCGAACGCGACAGCGAGAGCAGCATCACGCTCAACGCGGGCTACGTGAACAACATCACCGGCGAC
GTGAGGACGCTGGTGACGGGGCTGCTGTACCACGAGGTGACGCACGTGTGG-----------------------------
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--------CAATGGGGGCAGCAGGACACGAACCAGACTCACAGTTGGATCTACGA-------------------------
-----GGGGATGGCCGACTTCGTCCGGCTGCGTGCCGGCTATGCGGCGCCGTACTGGTTGCAGCCGGGGCAGGGGGACAG
CTGGGACACGGGCTATGACGTGACGGCGTGGTTCCTGGACTACTGCGACCAGCTGAGGCCGGGGTTCATGGCGGTGCTCA
ACCAGA--------------------------------------------------------------------------
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------------------GGCTCAAGGACGGCTACAGCGACGACGACTTCCTGCAGATTATGGGCAAGTCCGTGCAGGAG
CTGTGGAGGGATTACAAGGCCAAGTACGGCGGCTAGCTGACCCATCAATGTATTGGTGCTTCTGCTTCTAGGGGACTTAA
CATCGATTGCGTGCTTACTATCATTCATGTTTTGTAT-------------------------TTTCCTACCTTTTAGGGG
CTTTATTTCCAAGGTTTAGAGCAAATCCAGTAGATGCCCAATAAGTATAACCTCAAAAATATGTATTGGAACCTTTAATC
CCTATAAAAGATTATCTTTTGTTTCTACTTTTTTATTATTTTTTTGCGCATAGAAACACCATTCTAACTCCTGTTTCACA
CCATAATAATTTAAACGTTTGTATTTAGCATGTCATCGGCTACCAACTGATCGATCATTGTCTGTTACAAATGAAAAAGA
AAGAAGAAACAATTAAAATGGCCGTCCGGCAGCTAGTTAAACAACCGGACAAAGAAAACTG-AAAAATAAAGAACTTCAT
TATTCATTGTCTATTCACCAACATATAATCAGGTTAAACC-----CTGTACATGTACCCATCAGCCACCATCAGGACAAG
TGTGTCATCCGCTGCGATGTGGTTCAAATATATACAAACTCCTATGGAACTCTATCACAATCTCAGTGAAAATTAGGCCT
CATGGCTGAGCTACCTTGTGCCAATCTGCACTAGTAAGGTA---GCTAGCAGCTCTAGAATCCGCAGAAGTCCTTGAGCT
CACCATGCACGTCCTCGTTCCTGAGCTTGGACATGGCCGACTTCTCAATCTTCCTGATCCACTCCTTGGACACGTGGTAA
ATGCCTCCGATCTGCTCCAGGGACCGGCACCTGCCATCCTCGAGGCCGTGCCGCAGCTTCAGCACACGCCCTTCTCTTGC
CGGGAGCCTGTCCAGAACCATGAGCAGCCTCTCCCTCAGCTGCCTCCGGAAGATGGCCTCCTCTGGATCTTCTAGTGATG
TGTCTGGGGTCACGTCCTGCAGTTCAAACACCCTTCAGACAGACCTATTCGCCGTTCAAATCGACGTACTGTATGAACTA
ACTGTAGTTTTTGAGATAATTGGGGAGTTG
>chr1A_213
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----------------------------------------------------TCTAAACCTTGGAAATAAAGCCCCTAAA
AGGTAGGAAAATACAAAACATGAATGATAGTAAGCACGCAATCGATGTTAAGTCCCCTAGAAGCAGAAGCACCAATACAT
TGATGGGTCAGCTAGCCGCCGTACTTGGCCTTGTAATCCCTCCACAGCTCCTGCACGGACTTGCCCATAATCTGCAGGAA
GTCGTCGTCGCTGTAGCCGTCCTTGAGCCTCTGGTTGAGCACCGCCATGAACC---------------------------
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----------------------------CCGGCCTCAGCTGGTCGCAGTAGTCCAGGAACCACGCCGTCACGTCATAGCC
CGTGTCCCAGCTGTCCCCCTGCCCCGGCTGCAACCAGTACGGCG------------------------------------
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---------------------CCGCATAGCCGGCACGCAGCCGGACGAAGTCGGCCATCCCCTCGTAGATCCAACTGTGA
GTCTGGTTCGTGTCCTGCTGCCCCCATTGCCACACGTGCGTCACCTCGTGG-----TACAGCAGCCCCGTCACCAGCGTC
CTCACGTCGCCGGTGATGTTGTTCACGTAGCCCGCGTTGAGCGTGATGCTGCTCTCGCTGTCGCGTTCGAAGGCGAGGAT
GTTGGTGTTTATGAAGTTGACGACGAGCTTGACGCGGTCGTCCATGGCGGCTCGGCGGTCCTCGGGCGCCGTCTGGTTGA
AGATTTTCCAGGTGAAGAAGGAGGCCTCCGACATGACCTGCACCGCGTACCCCACGCCGTATTCCTCGTCGAAGCGCTGC
CCGCCGGGGGTCGTCGACG-------------------------------------------------------------
-----------------------------------------------------------CGTTGTTCATTGCCGTGAACC
TCACGCCGGCTGCCGTGGTGGCGAGGCCGGCGACCACGAGTAAGGAAGCCAACACTGGCGTGAAGTGCTTCATCATGATT
TAGCTTGTGTCTGAGTGGATGAGTGGCCGACCGGCCTCAAATTTATAGGCACATCCTTGACAAGTGACACTAAGGCCAAG
CCGGCAGGTTTTACTAATATAATGCTAGATAGAATCCTTAGTTGAAACTAGTTCAACAGTGACAATAAATACTTATCATC
ACCTTCTTGATTATTCTGTTACTAGCAGTCAGCATATCGTACTTGCGTTCGTCACCTTTGTCCTGCATTTGTAGTATTGC
TCTCACGAGCACCCCATAAATCGGCTAAGGGCATCTTTGATTCGTAGGATTTTGAGAACGTAGTAATACGAAAAGTATAA
GGTTAAAGTTGTATGCCCATTTGAATCCTATTAGATTAGCAATGAGTGTTTGATGACGCAGGAAAAATAAAGGAATCGTA
AAAAAAGGTTGGAGTGCATGTTAGATTTTCTATAAAATATAGTACAAAAGATTTCATATAAAAAATTCCTATGAGATTCA
ATCATATGAATTAAAGGACTAACATAAAAAAATCCTAAGGATTTCAATCCTTCGAAAATCTTATAAAATTCCTTTAAATC
AAAGAAGCCCTACAAATCGGCTCAAGGGCGGGTACAGCGACGAAGACTTCGTGAAGATTATGGGCAAGTGCGTGCAGGAG
CTGTGGAGGGATTACAAGGCCAAGTAGGGAGGCTAGCTGATCCATCCATGTA-----------GCTTCTAGGGGACTTAG
CATCGATTGTGTGCTTTCTATTATCCATGTTTCATAT-------------------------TTTCATACCTTTTAGGGG
CTTTATTTCCATGGTTTAGA------------------------------------------------------------
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>chr1D_730
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--------------------TAGCCGGTGCATGGGGTGCTACCGGGAGCAATACTACAAATGCAGGACAGAGGTGACGAA
CGCAAGTACGATATGCTGACTGCTAGTAACAGAATAATCAAGAAGATGACGACAACTGGTCGTTATCACTGCTGAACTCG
TCTTAACTGAGGATTCTATCTAGTAC---TATTAGTACAACCTGCCGGCTAGTAGGCCTTAGTATCACTTGTCAAATGTC
AAGGATCTGCCTATAAATTTGAGGCCCATAGACCACTCATCCACTCAGACACAAACTAAAGCATGATGAAGCACCTCACT
GCAGTGTTCGCTTCTTTACTCGTGGTCGCCGGCCTCG-------------------------------------------
------------------CCACCACGGCTGCCGGCGTGAGGTTCGAGGCAACGAACAACGCGTCGACGACCCCCGGCGGG
CAGCGCTTCGACGAGGAATACGGCGTGGGCTACGCGGTGCAGGTCATGTCGGAGGCCTCCTTCTTCGTCTGGAAAATCTT
CAACCAGACGGCGCCCGAGGACCGCAGAGCCGCCAT------GGACGACCGCGTCAAGCTCGTCGTCAACTTCATAAACA
CCAACATCCTCGCCTTCGAACGCGACAGCGAGAGCAGCATCACGCTCAACGCCGGCTACGTCAACAACATCACCGGCGAC
GTGAGGACGCTGGTGACGGGGCTGCTGTACCACGAGGTGACGCACGTGTGG-----------------------------
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--------CAATGGGGGCAGCAGGACACGAACCAGACCCACAGTTGGATCTACGA-------------------------
-----GGGGGTCGCCGACTTCGTCCGGCTCCGTGCGGGCTATGCGGCGCCGTACTGGTTGCAGCCGGGGCAGGGGGACAG
CTGGGACACGGGCTATGACGTGACGGCGTGGTTCCTGGACTACTGCGACCAGTTGAGGCCGGGGTTCGTGGCGGTGCTCA
ACCAGA--------------------------------------------------------------------------
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------------------GGCTCAAGGACGGCTACAGCGACGACGACTTCCTGCAGATTATGGGCAAATCGGTGCAAGAG
CTGTGGAGGGATTACAAGGCCAAGTACGGTGGCTAGCTGATCCATCGATGTATTGG------------------------
------TTGTGTGCTTAATATCATCCATGTTTCGTAT-------------------------TTTCCTACCTTTTATGGC
CTTTATTTCCAAGGTTTAGAGCAAATCTAGTAGATGCCCAATGAGTATAGCCTCAAAAATATGTATTGGAAC----AATC
CCTATAAAAATTTATCTTTTGTTTCTACTATTTTAT--TTTATTTGCGCATAGAAACACCATTCTAACTCCAGTTTCACA
CCATAATAACTTCAACGTTTGTATTTAAGCA-------------------------------------------------
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>chr1B_764
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------------------------------------------------------TACAAATGCAGGACAAAGGTGACGAA
CGCAAGTACGATATGCTGACTGCTAGTAACAGAATAATCAAGAAGATGATGGCAAGTATTCGTTGGCACTGTTGAACTAG
TCTTAACTAAGGATTCTATCTAGTACTTATATTAGTAAAACCTGCCGGCTAGGTCTTAG----------TGTCACTTGTC
AAGGATCTGCTTATATATTTGAGGCCGGTCGACCACTCATCCACTCAGACACAAACTAAAGCATGATGAAGCACTTCACC
ACAGTGTTGGCTTCCTTACTTGTGGTCGCCGGCCTCG-------------------------------------------
------------------CTGCCACGGCTGCCGGTGTGAGGTTCGAGGCGACGAACAACGCGTCGACAACCCCCGGCGGA
CAGCGCTTCGACGAGGAATACGGCGTGGGCTACGCGGTGCAGGTCATGTCGGAGGCCTCCTTCTTTGTCTGGAAAATCTT
CAACCAGACGGCGCCCGAGGACCGCAGAGCCGCCAT------GGACGACCGCGTCAAGCTCGTCGTCAACTTCGTAAACA
CCAACATCCTCGCCTTCGAACGCGACAGCGAGAGCAGCATCACGCTCAATGCGGGCTACGTCAACAACATCACCGGCGAC
GTGAGGACGCTGGTGACGGGGCTGCTGTACCACGAGGTGACGCACGTGTGG-----------------------------
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--------CAGTGGGGGCAGCAGGACACGAACCAGACCCACAGCTGGATCTACGA-------------------------
-----GGGGGTCGCCGACTTCGTTCGGCTCCGTGCCGGCTATGCGGCGCCGTACTGGGTGCAGCCGGGGGAGGGGAGCAG
CTGGGACATGAGCTATTCCGTCACGGCGTGGTTCCTGGACTACTGCGACCAGCTGAGGCCGGGGTTCGTGGCGGTGCTCA
ACGAGA--------------------------------------------------------------------------
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------------------GGCTCAAGGACGGCTACAGCGACGATGATTTCCTGCAGATTATGGGCAAGCCCGTGCAGGAG
CTGTGGAGGGATTACAAGGCCAAGTACGGCGGCTAG-----------------------------------GGGACTTGA
CATCCATTGTGCGCTTTTTTTTTTTGATAATCCATTGTGCGCTTTTATTAATATCATCCATGTTTCGTACCTCTTAGGGG
CTTTATTTCCAAGGTTTAGGGCAAATCTAGTAG---------------AGCCTCAAAAATTTGTATTGGAACCTTTATTC
CCTATAAAAAGTT-TCTTTTGTTTCTA-----------------------------------------------------
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>chr1D_2099
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---------------------------------------------------AAGAAGACTGAAAAAATAAAGAACTTCAT
GTTTCACTGTCAATTCACCGACATATAATCAAGTTAAACACTGTACTGTACATGTACCCATCAGCCACCATCAGGACAAG
CGTGTCATGCGCTGCAATGTGGTTCAAATATATACAAACTCCTATGGAACTCTATCACAATCTCAGTGAAAATTAGGCCT
CATGGCTGAGCTACCTTGTGCCAATCTGCACTAGAAAGGTA---GCTAGCAGCTCTAGAATCCACAGAAGTCCTTCAGCT
CATCATGCACGTCCTCGTTCCTGAGCTTCGACATGGCCGATTTCTCAATCTTCCTGATCCACTCCTTGGACACGTGGTAG
ATGCCTCCGATCTGCTCCAGGGACCGGCACCTGCCATCCTCGAGGCCATGCCGCAGCTTCAACACACGCCCTTCTCTCGT
CGGGAGCCTGTCCAGAACCATGAGCAGTCTCTCCCTCAGCTGCCTCCGGAAGATGGCCTCCTCTGGATCATCTATTGATG
TGTCCGGGGTCACATCCTGCAGTTTAAACTCCCGTCAGACTCC---ATTCGCCGTTCAAATTGAATGAGTGTATCAACTG
TTAG----TTTTGGGACAATGGGGAGTT--
>chr1B_2099
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---------------------------------------------------AAGAAGACTGAAAAAATAAAGAACTTCAT
GTTTCACTGTCAGTTCACCAAAATATAATCAAGTTAAACACTGTACTATACATGTACCCATCAGCCACCATCAGGACAAG
CGTGTCATGTGCTGCAATGTGATTCACATATATACAAACTCCTATGGAACTCTCTCACAATCTCAGTGAAAATTAGGCCT
CATGGCTGAGCTACCTTGTGCCAATCTGCACTAGAAAGGTACTAGCTAGCAGCTCTAGAATCCACAGAAGTCCTTCAGCT
CATCATGCACGTCCTCGTTCCTGAGCTTCAACATAGCTGACTTTTCGATCTTCCTGATCCATTCCTTGGACACGTGGTAG
ATGCCTCCGATCTGCTCCAGGGACCGGCACCTGCCATCCTCGAGGCCGTGTCGCAGCTTCAGCACGCGCCCTTCCCTCGC
CGGGAGCCTGTCCAGGACCAGGAGAAGCCTCTCCCTCAGCTGCCTCCGGAAGATGGCCTCCTCTGGGTCTTCTAGTGATG
TGTCTGGGGTCACGTCCTGCAGTTTAAACGCCCTTCAGACAGACTTATTCGTCATTCAAATTGACGTACTGTATGAACTA
ACTGTAGTTTTTGAGATAATAGGGGAGTTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------------------
-----S-------SS-------S--S----S------S---------S--------------------------------
S-----S----------S--S------------------------------------S---------------S--S---
---S-----------S---S---------SS-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------S-SS----------SSS-S-----------------------------------
---------------------------------------------S------S-------SS------------------
-S-S-------------------S--------------------------S--S--------------------------
------S------------------------S----------------------S-----S------------------S
S-------------------------------------------------------------------------------
----------------------------S---------------SS-----S----------------------------
-----------------------------S------------------------------------SS------------
-------------------------S------------------------------------------------------
-------------------------------------------------------------S------------------
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-------------------------------------S------------------------------------------
---------S-S-----------------S--------------------------------------------------
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----------------------------------------S-----S---------SSSSSSS-----------------
---------S----------------------S-----------------------------------------------
---------------------------S--------------S------S------------------------------
---------SS------------------S------SS---S-----------------------------S--------
---------S--S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------------------
SS----S----S-------------------S-------S----------------------------------------
S-------S------S----------------------------------------------------------------
----------------------------------S----------------------------S-----------S----
--S-------------------------S--------------------------------------------------S
-----------------------------------------------------------------------------S--
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------------------------S----S--------------S----------------S------------------
--------------------S---------
>forward_761
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---------------------AGCCGATTTATGGGGTGCTC---------------------------------------
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>reverse_3309
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----------------------------GGACATGGCCGACTTCTCAA--------------------------------
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------------------------------
