>input_sequence_71098
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-------ATGGGCTACATGGAAGATTACACGGGTGTGTATCTGAAAACTTCATTTGAGGGTGTATTTACTGTGTCAGTTA
AGGAGAACAACAACTCAGAGACAGATTTACATCGGGAGGTGTATAAAGTTGGGCCACTTGAAATTGAGTGCATGGTCAAG
GAGCACTCGAACTTCATGTCATATTCAGTTCTCAGTAACTTCAGGCATTTGAACATTGTTTCTGTTGAAAATTTCTATTT
GGATAAACATGGTAATGGATGCATGGTCCTGTCCTCGGTGGATCAAACTCTAAGAAGCTGGTTGTTGAAAGTGCGACGTG
GAGGACGAAAGTTGAAGGCATTTGAGTCAACCTATATGAGTAGCAAGCTTTCGAAGGTCTTTAGAAAAATGGCTATGTAA
GTTACGCATTGGTGCATTATTCTGTTCTTTCTCGGGCCTCTATATATGTTCTTCTCACAGCGGCATGTGTGATGTTGTGT
TATGTATAAGTGCATTGTTTTTCTTTTAGCCTCTAGATGTTCCTGACATATTTTTTCTGGCAGCGGCATGTGTGATGTTC
TGGAAAGTATGTTTAAAATTGGAATCTACCCTAAATCTATCAGACTGGCCGATATTTACCTTGTTAATCATGCATCCCCA
ACTGTGAAAATTCTCATCTCTGAAGGTACGTATACTAAACAAAGTCTCTGCAATTTCCTTCTTTTTCCATCTTGA-----
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>chr1A_1_TraesCS1A01G033900
CAGCATCCGCCGTCTGTCATGTTGCCGTTTGGAGATATCGGACGCCTTGGCGTTGCATCCGTAAAATCCAGAGGTTCTTT
CCAGCGCTGCTAGCTGCAGCCGCAGTTTGACCGGCCTTTATTGTATTCACACTTCATCGCGTCCATGCGTTCTACTACCT
CCGTTCCAATATATAAGACGTTTTGGTTGGCTAGTTTATAGCCTACTAAAACATCTTATATTTTGGAATGGAGGTACTGT
AGTATATAGTTATGTTATTTGATATGTCGTGCTTCTTTCTTTCATTCTGTATTGGACATGATTATTACCCTGT-------
-------------------------------------------------GCTTTGCATGTTGCCTGCTCTCTGTGCCCGT
AGTCTAATCCATTTGTTTGTGCCTTCCTTCTGCATCTACGCTGGGCCAACCTTGGCCTATGGCCGGTTGTCTTCCTTTCC
TTTTATGGTCATGTTGTTATTTTCCTGCGCCTCTCCTTGCTCTTCCTTGGCTGATCTTTAGTGGAATATGATTTGCTCTT
ATTGCTCTTACTTTTATGGGGGCGCCCTATTTCTTTCCAGCCTCTTGTATGTATGGTTTGCTTGTTTCAACTCACGTTTG
GTTATATTATGTTAAGGTTTCCTGGGACTTATTGTGCTGAGGAGGTTATTGTTCAAGTTTTTAGGTCCCAAGGATCTCAA
CCAGAAGG-CTTGGTCAGCAACAAAACTTCATTTTAAGGTACTTCACATTTCTATAAAACCACTCATGATGTTATTATTG
TTAAGCGCTCTGGTTGAAAGGTCTACTTCCTATATTATGGTTAGAAAAACTATATTACGGTAGCTACAGGTGAATTCGGC
ACAACTGTGCTCAAAATTAC------------------------------------------------------------
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----------CTACACCTGCTTGTATGTTTAAAATACCATGAAAATATATATCTCACCTTCACCTCTCACTAATTTTTCG
GGGATTGATCATGCCAATACTGTTCAATTGATTATGTCACAAGCTGTTCTGATATACTAATAATAACCTTTGACTAATTT
TGTAGCTATGGGCTACATGGAAGATTACACGGGTGTGTATCTGAAAACTTCATTTGAGGGTGTATTTACTGTGTCAGTTA
AGGAGAACAACAACTCAGAGACAGATTTACATCGGGAGGTGTATAAAGTTGGGCCACTTGAAATTGAGTGCATGGTCAAG
GAGCACTCGAACTTCATGTCATATTCAGTTCTCAGTAACTTCAGGCATTTGAACATTGTTTCTGTTGAAAATTTCTATTT
GGATAAACATGGTAATGGATGCATGGTCCTGTCCTCGGTGGATCAAACTCTAAGAAGCTGGTTGTTGAAAGTGCGACGTG
GAGGACGAAAGTTGAAGGCATTTGAGTCAACCTATATGAGTAGCAAGCTTTCGAAGGTCTTTAGAAAAATGGCTATGTAA
GTTACGCATTGGTGCATTATTCTGTTCTTTCTCGGGCCTCTATATATGTTCTTCTCACAGCGGCATGTGTGATGTTGTGT
TATGTATAAGTGCATTGTTTTTCTTTTAGCCTCTAGATGTTCCTGACATATTTTTTCTGGCAGCGGCATGTGTGATGTTC
TGGAAAGTATGTTTAAAATTGGAATCTACCCTAAATCTATCAGACTGGCCGATATTTACCTTGTTAATCATGCATCCCCA
ACTGTGAAAATTCTCATCTCTGAAGGTACGTATACTAAACAAAGTCTCTGCAATTTCCTTCTTTTTCCATCTTGACATTG
AAGTATAATGTTAGAACTGTTCTCAAATCAAGATCACTCATTGTTTTCTCACACACATGCACACAAGGAATTAGAACGAA
ACTGTATAGGTTTATATTAGCACAAGCTTAATTCTACAAACAGGGATACATGCGGCCAAACCAACTATGTTACCAATAGC
GAAGCTAGGACAGCTCAGTGCAAGTTTATACTGCAGTCTAGGACATACTGTGCCATATGTCTATTACAACAAAGTCAAAT
TAGACTTTGCTTTTTACTACTGACAGCTATATCATGTATCTGAAGGGTCTAGCTTCTGCTCATTGCTGACATATGCATAG
CTGGGTAATTTTGCATGCCATGATACAACTTTCACATAACTGACCATGACAAAGATCAACAATAACATTCTCCCTCTAAT
CTTGTCATATTAACTCACTTGTACGGATCTTCTTTGCTCTTGCATATCTGGGATGGGCATCTGATACTGCATGATCACAT
CTGCTGCATATGGCATCCCCTTGACGAATCCACACACATTTTCTAGTGGTCGCATCTAACAAGAACTCTGTTTCTTGTGG
ACACAACTAACACAAGAAACATGTTGTCATGTAGACGCACCTAATACAAGACTATTATCTCAGTGGACGCAGCTGACACG
AGAATTCAACTTCTTGTGGACGTAACTCACAAGATGCATCTTGTGGACACAACTGACACAAGATCTTGATCACACACGCG
ATTTTTGTGGACACAACTGACACAAGATCTTGATCACACATGTGATTTTGTGGGCACATCTAGCACAAGGACTCACATAA
CCACACACAGTGTCTCGTGGACGCAACTTACACAAGAACACAGACTTGTGCCACCGGTGGCACAACTTACGGGTGCACTA
CCTCCTCGTTGCCGGCGACACAATATACCGGACAACTCCTTGCTCAATCAGAACAAGGTTGTTTCATCTTCTGCACATGC
TTGAGAAAAATACGCCTCTGCATTGCTTTCTTTCC-------
>chr1B_1
TATGA---------------------------------------------------------------------------
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------TAGTGATGTTATTTGGTATGTTGTGCTCCTTTCTTTCATTCTGTATTGGACATGATTATTACCCTGTTAGCTTC
TGATGCAATAAAAATCTCAACTTTTCTGTGCTTCGCATACAACTGATGTGCTTTGCATGTTGCCTGCTCTCTGTGCCCAT
AGTTT-ATCCATTTGTTTGTGCCTTCCTTCTGCATCTACGCTGGGCCAACCGTGGCCTATGGCCGGTTGTTTTCCTTTCC
TTTTATGGTCATGTTGTTATTTTTCCT-GCCCCTCCTTGCTCTTCCTTGGTTGGTCTTTAGTGGAATATGATTTGCTCTT
ATTGCTCTTACTTTTCTGGGGGCACCCTATTTCTTTCAAACCTCTTGTATGTATGATTTGCTTGTTTGAACTCACGTTTG
GTTATATTATGTGAAGGTTTCGTCGGACTTATTGTGCTAAGGAGGTTGCTATTCATG-TTTTAAGTCCCAAGGATCTCAA
TCAGAAGGGCTTGGTCAGCAAGAAAAATTCATTTTAAGGTACTTCACATTTCTATAAAACCACTCATGATGTTATTATTG
TTAAGCGCTCTGGTTGAAAGGTCTACTTCCTATATTATGGTTAGAAAAACTATATCACGCTAGGTAGAGCTGAATTTGGC
CCAACTGTTCTGTTTGCTTATAATAGTGTATTATTTGCAACTTTTTTGCAAGGATATAATTAGCGCTATGCATATACTGA
AATTCGGTAATTTTTTGTATGCCTATGAACATGATGCGTCTCAGACGAAGTTTCGTCTGCTCGGGGCAGTTGTTTGGATG
CCTCTGAACATGATGCGTCGCAGGCGATCCGATTTTTATAGGGGATTAGGAGGGTTTGTGGTTGGGATTATAACTATGAT
TGTACTATGGTATGGAAAGATTCTGTATGCGTTCTGCTGTTTCCAGCGCAGCATCCGTCATCTGTCATGTTGCCGTTTGG
AGATATTGGACGCCTTGGCCTTGCGTTGGTAAATCCGGAGGTTCTTTCCAGCGCTGCTAGCTGCAGCCGCAGTCTGACTG
GTCTTTGTTGTATTCACACGTCGTCGCGTCCATGCGTTCTACCGCCTCCATTCCAATATATAAGACATTTTGGTAGGCTA
GTTTAGCCTACTAAAACGTCTTGTATTTTGGAAT----------------------------------------------
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---------------------------------GGAGGTAGTATATAGTTATGTTATTTGATATGTCGTGCTT-------
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-------------------------CTTTCTTTCATTCTGTA
>SNPs
S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----S----------S-----S-----S----------------------------------------------
------------------------------------------------------------------------------S-
---S-S---------------------------------------------S------------------S---------
-----------------------S-SSS---S------------------S--S--------------------------
---------------S-------S-------------S-S---------------S-----------S------------
------------S--------S-S--------------S--------SS-S----S-S-----S----------------
S--------------------S----S-----------------------------------------------------
-------------------------------------------------------S---S---S--S--S------S---
S-------S--SSSSSS-SS------------------------------------------------------------
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-------------S-S-SS-------S--SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--SS-SS-----S----SS-SS-S----S--SSS----S-SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------S-------
>forward_145
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---------------------------------------------TTCACACTTCATCGCGTCCA---------------
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>reverse_1966
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---------------------------------------------ATGTTCTTCTCACAGCGGCA---------------
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>forward_1692
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------------------------------------------------------------------------TGGTCAAG
GAGCACTCGAAC--------------------------------------------------------------------
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>reverse_3133
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------------CGGCGACACAATATACCGGA------------------------------------------------
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