>input_sequence_71087
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---------------------------------------------------------------------ATGGCCACGCG
AAAGCAGCCGTCGCAGGGCGCGACGCCGGACGCTGCCGCTGCCCAGCCTCGGAGGCCCCGCGTCCTGGTCGCCGCCTCCG
GCAGCGTGGCGGCGATCAAGTTCGAGATCCTCTGCCGGAGCCTCGCCGAGTGGGCCGACGTCCGGGCGGTGGCGACGGCC
TCGTCCCTACACTTCATCGACAGGGAGTCGTTCCCAAGCGGCGTCGCCCTCCTCACCGACGCCGACGAGTGGTCCGCCTG
GGGGAGGATCGGCGACGAGGTCCTGCACATCGAGCTGCGCAAGTGGGCCGACGCCATGCTCATCGCGCCGCTCTCGGCAA
ACACCCTGGCCAAGGTAGGTACTGTA--ATACCGTGGACACACCTGC------------GGCGTTCTG-TGCTGTTCTGT
TTTGATA----TTTTTTTTTCTCTCGATCTGCCGCGCTCAGATCGCCGGCGGGCAGTGCGACAACCTCCTGACGTGCGTG
GTGCGCGCGTGGGACTACAGCAAGCCCATCTACGTCGCGCCGGCCATGAACACCTTCATGTGGGACAACCCCTTCACCAG
GCGCCACCTCGACGCTGTCGCCGGCCTCGGCGTCTCCCTCATCCCTCCGGTGACCAAGCGGCTCGCCTGCGGGGACTACG
GCAACGGCGCCATGGCAGAGCCCACCGAGATCTGCAGGACCCTCAGGCTCTTCTTCGGTTCACAAGAGCCACTCTGA---
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>chr3B_1_TraesCS3B01G161400
AGGAAGGCCATGTTATCTAACAGTCGTAATGGTAGGTCTTCACATGACCACCTTCGCCTATGTCAACAGGTGAGGCATTA
GAGAAAAATAAATCCATACCGACATCAACTAAGAAATGCTGTTAACATTCGAAG--------GTGCAATGTTGTGCCGAC
TTCAGCCTTTTTTATACCCTTGGGCATTGCTGTAGGTGGGTAAGTTGGAATTTGAATATGAAAGACTAAAGAAAGATGCC
AGCATTTACCATAATCTTCATGAGCAGCTTCAGCTGTCATCGTGCTACAAACTGGTAACGCGCTTCTGTTCTTCTCGCAA
GCAAGTACCTTTGGTC-CGTGATATGAACATACCAGATGTTGTGACACCAAACCTTTCTCCGTGGCAGATGGAGGAGAGC
AACGATGAAGCGGAGAAGAAAATCCGTGAAGCAGCCTTCGCCAAAGGGGTACGCGATACCGCTTTCGAGGACCTGCTGGC
CGTGGAGAAGAAGGATGACGCCTTCTGGCGTCGTCACGGGAAGCTGAGGTCGATCTCGGACAGCATGTAGGCAGCGAGAC
AGCAGACTAGGCGATCGCACTGACTGT-----CATCGTCGTTGCCAGTCTAAGACTCCAGGAACTAGAAACTGAATTTGT
CCCTTGGTGAGAACTTGTGTGTGTTGAAACCATGGACG----------------------GTGTGATCGTGCTCGTCAAG
CTCTTGGGCCTCCCCCTGT-GCCTTGAACTCTTGAGTCATGGCTATGAATAAGATCTGAACTGGGCAGATCCAAATGAAA
ATGTGTTTTCCTTGGGTGGTGA----------------------------------C------TGTTGCTGCTGCTGCTG
CGCTCTGGATCGTTGGCGCA------------ATTTACTGCTGTTTGTTTCTCCAGCTAACACCGGCCCTTCTTGTCCCC
CTACTGCTGAGTTTGCGATCGAGACTCGAGAG-----GTGTGAGTGCCGCAATTACTTCCCATCTCCCTTC---------
--AGTGATTTCAGAGAGTTGCCTTTTCATTTCCAACACGTAGAGCCATCGTAA----TTCACAAGTGCAATGGCCACGCG
AAAGCAGCCGTCGCAGGGCGCGACGCCGGACGCTGCCGCTGCCCAGCCTCGGAGGCCCCGCGTCCTGGTCGCCGCCTCCG
GCAGCGTGGCGGCGATCAAGTTCGAGATCCTCTGCCGGAGCCTCGCCGAGTGGGCCGACGTCCGGGCGGTGGCGACGGCC
TCGTCCCTACACTTCATCGACAGGGAGTCGTTCCCAAGCGGCGTCGCCCTCCTCACCGACGCCGACGAGTGGTCCGCCTG
GGGGAGGATCGGCGACGAGGTCCTGCACATCGAGCTGCGCAAGTGGGCCGACGCCATGCTCATCGCGCCGCTCTCGGCAA
ACACCCTGGCCAAGGTAGGTACTGTA--ATACCGTGGACACACCTGC------------GGCGTTCTG-TGCTGTTCTGT
TTTGATA----TTTTTTTTTCTCTCGATCTGCCGCGCTCAGATCGCCGGCGGGCAGTGCGACAACCTCCTGACGTGCGTG
GTGCGCGCGTGGGACTACAGCAAGCCCATCTACGTCGCGCCGGCCATGAACACCTTCATGTGGGACAACCCCTTCACCAG
GCGCCACCTCGACGCTGTCGCCGGCCTCGGCGTCTCCCTCATCCCTCCGGTGACCAAGCGGCTCGCCTGCGGGGACTACG
GCAACGGCGCCATGGCAGAGCCCACCGAGATCTGCAGGACCCTCAGGCTCTTCTTCGGTTCACAAGAGCCACTCTGAAAG
ACTTG--------------------------CTCACTCTGTTTGCCTGCTGTACGAGATAGGTGTATCCGCAAACACTTT
CTCTTCTATCGAACGCTTACAATGTGATGATCGTCCTCCATGGTACGTCTCTCGTCGTCCATTGCGCTGTACAAATCGTC
GAGCACCCTGAAGATCTCCTCAGCTCTGGGCATTGACGGGGGCACACTGCCGGCCACGAAGGCGAACACCTTGTTCTTCA
CCTCGATCCAGCTCTGCCCCGGGCTCTTCCTCAAGCCGGCCTCTCTCGTCATCACCCTCACCCTCTTGGAGTCGTCCCAC
ATCCCGCACGCGGCGTACAGGTTCGTGATCAGCGTGTGGTTGCCGGTGGTCTCCGCGCCCGCCTGCAGAACCTTCGCGAT
GGTGGCTTCGGCCATGGCTGCGTCCCCATGGATCCTGCAGGAGTTGAGCAGCGCTCCCCAAACGCACAGGTCGGCTCCCA
CCGGCATCGTCTCGATGAGCTCAGACGCGTCCTTGAGCAAGCCGGCACGCCCCAGGAGGTCGACCATGCACGTGTAGAGC
TCCATGGACGGGGTAATCTTGTGCTCCCGCATCATCTGATCAAACAGCCGGCGGCCCTCCCACACGCGCCCTGCATGGCT
GCACGCCGACAGAACGGCGACGAAGGTGACACCGTCAGGATCGACCTTAGCTTCTGCCATGTCTGTGAACACTGCCAGGG
CGTCGTCGCACAGGCCGTGCATCCCATAGCCGGCCAACATAGAGTTCCAGGAGACCAGGTCCCTGCTCTTCATACTGTCG
AACACCGTGCGTGCGTAGGCGACTCTCCCGCACTTGGCGTACATGTTGATGAGCCCGTTCGCGACGAGCAAGTGCCGGTC
AACCATGGATCTGATCGCGTCGGCATGGACCTCCCGACCCAGCCGCACCGCCAGCAGCTCGGCGCAGGCTGAGAGAACGG
TAGCTAAGGTCACCACGTTTGGCGAAAGCCATTGCTGTTGCATCCGCCGGAACAGCTCCAGTG
>chr3D_1
AGGAAGGCCATGTTATCTAACAGTCGTAATGGTAGGTCTTCACATGACCACCTTCGCCTATGTCAACAGGTGAGGCATTA
GAGAAAAATAAATACATACCGACATCAACTAAGAAATGCTGTTAACATTCGAAG--------ATGCAATGTTGTGCCGAC
TTCAGCCTTTTTTATACCCTTGGGCATTGCTGTAGGTGGATAAGTTGGAATTTGAATATGAAAGACTAAAGAAAGATGCC
AGCATTTACCATAATCTCCATGAGCAGCTTCAGCTGTCATCGTGCTACAAACTGGTAACGCGCTTCTGTTCTGCTCACAA
GCAAGCACCTTTGCCC-CGTGATATGAACTG-CCAGGTGTTTTGACACCAAACCTTTCGTCGTGGCAGATGGAGGAGAGC
AACGATGAAGCGGAGAAGAGAATCCGTGAAGGAGCCTTCGCCAAAGGGGTGCGCGATACCGCCTTCGAGGAACTGCTGGC
CGTGGAGAAGAAGGACAACGCTTTCTGGCGTCGTGACGGGAAGCTGAGGTCGATCTCGGACAGCATGTAGGCAGCGAGAG
AGCAGACAAGGCGATTGCATTGATTGT-----CATCGTCGTCGTCGGTCTAAGACTCCAGGAACCAGAAACTGAATTTGT
CCCTTG--GAGAACTTGTCTGTGTTGAAACCATGGACAGTGCGTGTTGAAACCATGGACAGTGCGATCGTGCTCGTCGAG
CTCTCGGGCCTCCCCCCTGCGCCTTGAACTCTTGAGTCATGGCTTTTAATAAGATCTGAACTGGGCAGATCCGAATGAAA
ATGTGTTGTCCTTGGGTGGTG---ACTGGTGAATGCGTCTCGATGCGATGCTGTGCC------TGTTGCTGCTGCTGCTG
CGCTCTGGATCGCTGGCGCA------------ATTTACTGCTGTTTGTTTCTCCAGCTAACACCGGCCTTTCTTGTCCCC
CTCCTGCTGAGTTTGCGATCTAGA-------G-----GTGTGAGTGCCGCAATTACTTCCCATCTCCCTTC---------
--AGTGATTTCAGAGAGTTGCCTTTTCATTTCCAACACGTAGAGCCATCGTAA----TTCACAAGTGCAATGGCCACGCA
AGAGCAGCCGTCGC------------CGGGCGCCGGCGCCGCCCGGCCTCGGAGGCCCCGCGTCCTGGTCGCCGCCTCCG
GCAGCGTGGCGGCGATCAAGTTCGAGATCCTCTGCCGGAGCCTCGCCGAGTGGGCCGACGTCCGGGCGGTGGCGACGGCC
TCGTCCCTGCACTTCATCGACAGGGAGTCCTTCCCGAGCGGCGTCGCCCTCCTCACCGACGCCGACGAGTGGTCCACCTG
GCGGAGGATCGGCGACGAGGTCCTGCACATCGAGCTGCGCAAGTGGGCCGACGCCATGCTCATCGCGCCGCTCTCGGCCA
ACACCCTGGCCAAGGTAGGC-------AATACCGTGAACAGCTGAACACCGAGTCATGCGGAGTTCCGTTGCTGCTCTGT
TTTGACCAC-----TTTTTTCTCTCGATCCGCCGCGCTCAGATCGCCGGCGGGCTGTGCGACAACCTCCTGACGTGCGTG
GTGCGCGCGTGGGACTACAGCAAGCCCATCTACGTCGCGCGGGCCATGAACACCTTCATGTGGGACAACCCCTTCACTAG
GCGACACCTTGACGTCGTCGCCGGCCTCGGCGTCTCCCTCATCCCTCCGGTGACCAAGCGGCTCGCCTGCGGGGACTACG
GCAACGGCGCCATGGCAGAGCCCGCCGAGATCTGCAGGACCCTCAGGCTCTTCTTCGGCTCACAAGTTCCACTCTGAACA
CTCTGCAGCTCGCCCAAGTTCTTCAGTATCTCTCACTCTGTTTGCCTGCTGTACGAGATACATCTATCTGCAAAAGCTTT
CTCTTCTATCAAACGTTTACAATG---TGATCCTCCTCTATGGCGCGTCTCTGGTCATCCATTTCGCGATACAAATCGTC
GAGCACTCTGAAGACGTCCTCAGCTCTGGGCATCGACGGCGGGACGCTGCCGGCCATGAAGGCAAACACCTTGTTCTTCA
CCTCAACCCAGCTCTGCCCCGGGTTCTTCCTCAAGCCGGCCTCCCTCGTCATCACCCTCACCCTCTTGGAGTCGTCCCAC
ATCCCGCACGCGGCGTACAGGTTCGTGATCAGCGTGTGGTTGCCGGTGGTCACCACGCCGGCCTGCAGAGCCTTCGCTAT
GGTGGCTTCGGCCATTGCTGCGTCCCCATGGATCCTGCAGGAGTTGAGCAGCGCGCCCCACACGCACAGGTCGGCTCCCA
TCGGCATCGTCTCGATGAACTCGGACGCCTCCTTGAGCAAGCCAGCCCGCCCCAGGAGGTCTACCATGCACGTGTAGTGC
TCCATGGATGGGGAAATCTTGTGCTCCAGTATCATCTGATCGAACAGACGGCGGCCCTCGGACACCCGCCCTGCGTGGCT
ACACGCGGACAGAACGGCGACGAAGGTGACACCGTCAGGATCGACCTTAGCTTCTGCCATGTCTGTGAACACTGCCAGGG
CGTCGTCGCACAGGCCGTGCATCCCATAGCCGGCCAACATAGAGTTCCAGGAGACCAGGTCCCTGCTCTTCATACCGTCG
AACACCGTGCGTGCGTCGGCGACTCTCCCGCACTTGGCGTACATGTTGATGAGCCCGTTCGCGACGAGCGAGTGCCGGTC
GACCATGGATCTGATCGCATCGGCATGGACCTCCCGACCGAGCCGCACCGCCAGCTGCTCGGTGCAGGCTGAGAGAACGG
TAGCTAAGGTCACCACGTTCGGCGAAAGCCATTGCTGTTGCATCCGCCGGAACAGCTCCAGTG
>chr3A_1
AGGAAGGCCATGTTATCCAACAGTCGTAACGGTAGGTCTTCACATGACCACCTTCGCTTATGTGAACAGGTGAGGCATTT
GAGAAGAGAAATCCCATACCGACATCAACTAAGAAATGCTGTTAACATTCGAAGATGCAGACATGCAGTGTTTTGCCGAC
TTCAGCCTTTTTAATAG-CTTGGGCATTGTTGTAGGTGAGTAGATTGGAATTCGAATATGAAAGACTAAAGAAAGATGCC
AGCATTTACCATAATCTCCATGAGCAGCTTCAGCTGTCATCGTGCTACAAACTGGTAACGATCTTCTGTTCTGCTCACAA
GCAAACACCTTTGCCCCCGTGATATGAACTG-CCAGGTGTTTTGACACCAAACCTTTCACCGTGGCAGATGGAGGAGAGC
AACGATGAAGCGGAGAAGAGAATTCGCGAAGGAGCCTTCGCCAAAGGGGTGCGTGATACCGCCTTCGAGGACCTGCTGGC
CGTGGAGAAGAAGGACGACGCTTTCTGGCGCCGTGACGGGAAGCTGAGGTCGATCTCGGACAGCATGTAGGCAGCGAGGC
AGAAGACAAGGCGATCGCACCGACTGTGTCATCTTCGTGGTCATCAGTCT-AGACTGCAGCAACTAGAAACTGAATCTGT
CCCTTG--GAGAACTTGTGTGTGTTGAAACCATTGGCG----------------------GTGTGATCGTGCTCGTCGAG
CTCTGGATCCTCCTCCTGTGT-CTTGAACTCTTGAGTCGTGGCTTTCAATAAGATCTGAACTGGGCAGATCCAAGTGAAA
ATGTGTTGTCCTTGGGTGGTGGTGACTGATGAATGCCGCTCGATGTGATGCTGTGCCTGTTGTTGCTGCTGCTGCTGCTG
CGCTCTGGATCGCTGGCGCTGGCGCTGGCGCCATTTACTGCTGTTTGTTTCTCCAGCTAACTCCGGGCCTTCTTGTCCCC
CTCCTC---AGTTTGCGATCTACA-------GATTTCGTTTCAGTGCCGCAGTTACAGTGTACTTGTTACCTCCCTTCAC
CTAGTGATTTCAGAGAGTTGCCTTTCCATATCCAACACGAAGAGCCATCAGAGTAATTTCACCAGGGCCATGGCCACGCG
AGAGCAGCCGTCGCAGGGCGTGACGCCGGACGCTGCCGCCACTCAGCCTCGGAGGCCCCGCGTCCTGGTCGCCGCCTCCG
GCAGCGTGGCGGCGATCAAGTTCGAGGTCCTGTGCCGGAGCCTCGCCGAGTGGGCCGACGTCCGGGCGGTGGCGACGGCC
TCGTCCCTGCACTTCATCGACAGGGAGTCGTTCCCGAGCGGCGTCGCCCTCCTCACCGACGCCGACGAGTGGTCCGCCTG
GGGGAGGATCGGCGACGAGGTCCTGCACATCGAGCTGTGCGAGTGGGCCGACGCCATGCTCATCGCGCCACTCTCGGCCA
ACACCCTGGCCAAGGTAGGTACTGTAAAATACCGTGGACACACCGTG------------GGCGTCTCGTCGCTGTCCTGC
TTTGACCATTTTTTTTTCTTCTCTCGATCTGCCGCGCTCAGATCGCTGGCGGGCTGTGCGACAACCTCCTGACGTGCGTG
GTGCGCGCGTGGGACTACAGCAAGCCCATCTACGTCGCGCCAGCCATGAACACCTTCATGTGGGACAACCCCTTCACCAG
CCGCCATCTCGACGCCGCCGCCGGCCTCGGCGTCTCCCTCATCCCTCCGGTGACCAAGCGGCTCGCCTGCGGGGACTACG
GCAACGGCGCCATGGCAGAGCCCGCCGAGATCTGCAGGACCCTCAGGCTCTTCTTCGGTTCACAAGAACCATTCTGAAAG
ACTTG--------------------------CTCACTCTGTTTGCCTGCTGTACGAGATAGGTGTATCCGCAAACACTTC
CTCTTCTATCAAACGCTTACAATGTGGTGATCGTGCTCCATGGTGTGTCTCTCGTCGTCCATTTCGCTGTACAAATCGTC
GAGCACCCTGAAGATCTCCTCAGCTCCGGGCATCGACGGCGGCACACTGCCGGCCACGAAGGCGAACACCTTGTTCTTCA
CCTCGATCCAGCTCTGCCCGGGGCTCTTCCTCAAGCCGGCCTCTCTCGTCATCACCCTCACCCTCTTGGACTCGTCCCAC
ATCCCGCACGCGGCGTACAGGTTCGTGATCAGCGTGTGGTTGCCGGTGGTCTCCGCGCCGGCCTGCAGAACCTTCGCGAT
GGTGGCTTCGGCCATGGCTGCGTCCCCATGGATCCTGCACGAGTTGAGCAGCGCTCCCCACACGCACAGGTCGGCTCCCA
CCGGCATCGTCTCGATGAGCTCAGACGCGTCCTTGAGCAAGCCGGCACGGCCCAGGAGGTCGACCATGCACGTGTAGTGC
TCCATGGATGGGGAAATCCTGTGCTCCAGTATCATCTGATCAAACAGACGGCGGCCCTCCGACACGCGCCCTGCGTGGCT
GCACGCCGACAGAACGGCGACGAAGGTGACGCCGTCAGGATCGACCTTAGCTTCGGCCATGTCTGCGAACACTGCAAGGG
CGTCGTCGCACAGGCCGTGCATCCCGTAGCTGGCCAACATGGAGTTCCAGGAGACCAGGTCCCTGCTCTTCATACCGTCG
AACACCGTGCGTGCGTAGGCCACTCTCCCGCACTTGGCGTACATGTTGATGAGCCCGTTCGCGACGAGCGAGTGCCGGTC
GAGCATGGATCTGATCGCGCCGGCATGGACCTCCCGACCCAACCGCACCGCCAGTAGCTCGGCGCAGGCTGAGAGAACGG
TGGCTAAGGTCACCACGTTCGGCGAAAGCCATCGCCGTTGCATCCGCCGGAACAGCTCCAGTG
>SNPs
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--------------------------------------------------------------S-----------------
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-----------------S------------------------------------------------------S---S---
-----S-------SS--------------SSS----S----S----------------S---------------------
-------------------S-----------S------------------S-----------S-----------------
---------------S-----S------------S---------------------------------------------
-------S---------------------------------S-S------------------------------------
------SS---------------------------------------------------------------------S--
----S---------------------------------------S-S---------------------------------
-------S-------------S----------------------------------------------------------
------------S-------------------------------------------------------------------
--S-----------------S---SSSSSSS-------------------------------------------------
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-S------------------S------------------S----------------------------------------
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--------S--------------------------S--------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------SS--------------------S-------------
-----SS-----------------------------------------------S-------------------------
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---------------S----------------------------------------------------------------
-----------------------S-------------------------------------------S------------
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----------S---------------S-----------------S------------------S----------------
---------------------------------S-----S----------------------------------------
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-----------------------------------------------------------S--------------------
------------------------------------------------------------S-------------------
-----------------------------------------------------------------------------S--
--------S----S-------------S-S-----------------S------------S-------------S-----
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---------------------------------------------------------------------------S----
---------------------------------------------------------------------S----------
S-------------------------------------------------------------------------------
-------------------S-------------------------------------------
>forward_502
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--TGGAGAAGAAGGATGACGCC----------------------------------------------------------
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>reverse_1984
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---------------------------------------------------------------GCGCTGTACAAATCGTC
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