>input_sequence_71068
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--------------------------------------------------------------------ACTTCTTCTTCC
ACCCTCTGTCTGTCTCGCCATACCGCCGTCCTCCTCCTACCTCACCATGAGCAGCTTCGCGTACGAGAAGCTCAAGAAGC
TCCCGCCCCCACCCCCTCCCGCCAGCGACCAGGAGGACGCGCACTACGCCGTGGCCGCCGCTCAGGACCACTACTACCGC
CACGCAGCCGCCGCGATCGTCGCCAGCAGGAGGACATGGCGGAGCCGCCGGTCGTCCTCGGGCACCGGGCCGCGCCGGCG
CGGAAGGCCGCTGAGGATCTCGAGCCTGGCGCGGGCGCTGCGTCGGAGGGCGGCAGCCGTGGGTGGCAGGGTGCGGGCGT
CAGTGGCCCGGGTGGTGACTAGGCTCAAGGAGGGCGGGCCCTGCGTGGCCGCCCTCTTCGCCGGCAACTACATGTTCCTG
CAGGTCACGCCGTCGATGGCCGTGCCCGCCGCGGCCGGGGTCGGCAGGGGGGCCTTCCTGCCATACTACCTCGCCGTCAA
GGGCAAGGCCGCCGGCGCCGGCGCCGTGCACGGCTTGATCCGCGCCTAGTTCTACTTGTAC--AGAGCGAGTTGTTTGCT
TTTGTTCTGTCTTGTGCATGATTTAATTATAAGCAAGTGGGTTTGCTTTGTGTAACTGGGAGATGTGGATCAAACCTGC-
-TGTCCAAAATAATCTGTAAAGGGAAACTAAATTACATTTCACTAGTGCTTTCTACAATAAA------------------
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-----------------------------------------------
>chr3A_1_TraesCS3A01G474000
GAGAATTCTGGACCAGCAAATCGTCATAGTTTCTGCAATTGGGTCACTCTGCTCCCAGGCCCACATGTCACGACGTGCAC
CCACCCCATGCTGCAGCGCGCAGGAACCCGGCCAGCCAGCGCCGCCACCCAACCCGATTGGATTGGATTCGTCGCGCGCT
ACGCTTCAGCTGCGGTGTCGCCGTCAATCCATCTCCGCCGGGCCGGTCCG-----------ACGTCCTTCCGCCACCGAT
GGACGCACAATGCGCACGACCGCGACCCCTTTGGACGCACGTGGAGACCAACCGACGAAACGATGCCTCAACAACGTACA
ACCGTCGACCGGCCACCGGCGGCCGGCCGGCCGGCCGGCTGGCAGCGAGTAACTGAGCAGCAGTGCGACCGGCGCGGCAC
ATCAATGCGATCGAGCATCGCGCAGCAGTCCAGTCG----AGTCAGCAGCCAACAAACGGTGTCCTTGTGAAAAACAGTG
CC------CTGCCTATCCATCCATCCATTCCATCGCCCCAACCATATTTGCGCCCTCCTTAACTCCGGCCCCGCCGCGCG
CCGCCGTCCCGATCACCAACCCTGCTTTACCGAGCTTAGCCGACGTGACAGCCGATCCGTAGCACTGGCACACGCAACTC
CGGTAAACTGAGCTATACCACGTTCACGCTCGAGTACGGGCTGAATTTAGCTGGCTCACGCAAAGATCATGTGCGAGTTC
GTTTCACGTAGCTACGCTCGCTGTCTGCCTGTCCGGTACGTACATGCACAGAACTGGCCGGCCGGTAGCGTCGATCTTGC
CAGC----CATGGTTGATGGTGGCTCCCGGTCTCGGTCGGCAATGCGACGTTGTCACGGACCCATGGGCCATGGCGTACA
CGGCGACGTGTAAGGCCCGCGACATCAGATACGAGCTACTACTACTA---GAGTGGTAGTACACGTTTGGTTGAGCCATC
ATTCATCACCGGCCACAGCCACCACCCCCGGCTTAGCTTAATTAGCTACGTACACTCTGTGCTTCTTCACTTCTTCTTCC
ACCCTCTGTCTGTCTCGCCATACCGCCGTCCTCCTCCTACCTCACCATGAGCAGCTTCGCGTACGAGAAGCTCAAGAAGC
TCCCGCCCCCACCCCCTCCCGCCAGCGACCAGGAGGACGCGCACTACGCCGTGGCCGCCGCTCAGGACCACTACTACCGC
CACGCAGCCGCCGCGATCGTCGCCAGCAGGAGGACATGGCGGAGCCGCCGGTCGTCCTCGGGCACCGGGCCGCGCCGGCG
CGGAAGGCCGCTGAGGATCTCGAGCCTGGCGCGGGCGCTGCGTCGGAGGGCGGCAGCCGTGGGTGGCAGGGTGCGGGCGT
CAGTGGCCCGGGTGGTGACTAGGCTCAAGGAGGGCGGGCCCTGCGTGGCCGCCCTCTTCGCCGGCAACTACATGTTCCTG
CAGGTCACGCCGTCGATGGCCGTGCCCGCCGCGGCCGGGGTCGGCAGGGGGGCCTTCCTGCCATACTACCTCGCCGTCAA
GGGCAAGGCCGCCGGCGCCGGCGCCGTGCACGGCTTGATCCGCGCCTAGTTCTACTTGTAC--AGAGCGAGTTGTTTGCT
TTTGTTCTGTCTTGTGCATGATTTAATTATAAGCAAGTGGGTTTGCTTTGTGTAACTGGGAGATGTGGATCAAACCTGC-
-TGTCCAAAATAATCTGTAAAGGGAAACTAAATTACATTTCACTAGTGCTTTCTACAATAAATAATGTGTAAAGG-----
-----------------------------------------------GAATCTAAATTACTTTTCACTAGTGCTTAGTAT
AAG--TTTGTACGTTGCT---------------------------------TGATTACCCTGTGTTAATTACAGTTAGT-
-----TTTTGAATGAATGGTTGATGCTGATGGCTGAGTAACTACTAGCAGTTGAGCTATGTATGCATGCGGGCATTTCGT
AC-TTGGTAGGTCACATGGGCTTGCTTTTCGCAGTATTACTTGAGTACATATAATTGACTGCATTTGGTACTTGGTAGGT
CACTCAGAAGCTCTTAGGTGGTCCATTAGATTATTATATTTATGAATGGTACTTACGTACGTAGCTGTACCTGCTTACTG
TCCTTGAATTTTTCGACAAAGAGTGGATTTTATTAACTCAAAATGTAGCATCAAGAGGATACAAACATAATGAGCACACA
CCCGG--CCTCTGCATAGTGAAGATGCACACAGCCAACACAAATTCACGCACACAAAAACACGCCAGC--AA-TAGCAAA
GTC-ATATAGGACCAAAGCTATGCATA-GGCGATGAAAAAAG--AAAAAAAGCCCCAAAGCAATCATATCCACGATGGGC
AAACTAGAAAAATGACCGTATCTGCACCATTCATCTCATGACACCACACGGACGACGAGGTTCTTCAATAGTAATGCCTT
CAGAAAGGGAGCGACACTTGAGCGTCGCCATCACCGGATCCAACCACCAAGGCTAGAATCTAGGTTTTCACCCTGAAGAA
TCGGTCTGAGCATTCCGAACAATGCCTTCAACAAGGTAACAACATAAAAATGTCGCCATTGCCAGGTATACCCAACTCGG
GGCAGACCTAGGCTTTCACCCCGACACTCAGAGACCGGATGCTCAAGTAGCACCACCCTCGAAGTCACTGACGTGTTGTC
GCCACCACTTTTCCGCGATACCAGCAGCTACATGCGATGTGACCGTCACCGCCACCGCCACACAACCATCCCTCTGCATC
AAGACATCGTTCATAGTTTGCATATCCCCGTC--GAAATCGACCACC
>chrUn_68
-------------------------------------------------------------------TCGCGACGTGCAC
CCGCTGCTGCTGCGA-CGCGCAGGAACACGGCCAGCCAGCGCCGCCACCCAACCCG-----ATTGGATTCGTCGCGCGCT
ACGCTTCAGCTGCGGTGTCGCCGTCAATCCATCTCCGCCGGGCCCGTCCGATCCGATCCGAACGTCCTTCCGCCACCGAT
GGACGCACAGTGCGCACGACCGCCACCCCTTTGGACGCACGTGGAGACCAACCGACGAAACGATGCCTCAACAACATACA
ACCGTCGACCGGCCACCGGCGGCCGGCCGGCCCGCCGGCTGGCAGCGAGTAACTGAGCAGCAGTGCGACCGGCGCGGCAC
ATCAATGCGA----GCATCGCGCAGCAGTCCGATCG----AATCAGCAGCCAACAAACGGTGTCCTTCTGAAAAACAGTG
CC------CTGCCCATCCATCCAT----TCCATCGCCCCAACCACATTTGCGCCCTCCTTAACTCCGGCCCCGCAGCGCG
CCGCCGTCCCGATCACCAACCCAGCTTTA-CGAGCTTAGCCGACGTGACAGCCGATCCGTAGCACTAGCACACGCAACTC
CGGTAAACTGAGCTATACCACGTTCACGCTCGAGTACGAGCTGAATTTAGCAGGTTCACGCAAAGATCATGTGCGTGTCC
GTTTCACGTACCTAAGCTCGCTGCCTGTCCG--------GTACATGGACAGAACTGGCCGGCCGGTAGTGTCGATCTCGC
CAGCCATGCATGGTTGATGGTGGCTCCCGGTCTCGGTCGGCAATGCGACGTTGTCACGGACCCATGGGCCATGGCGTACA
CAGCAACGTGTAAGGCCCGCGACATCAGATCACTGG--CTACTAGTAGTAGAGTAGTAGTACACGTTTGGTTGAGCCATC
ATTCATCACCGGCCACAGCCACCAGCCCTGGCTTAGCTTAATTAGCTACGTACACTCTCTGCTTCTTCACTTCTTCTTGC
ACCCTCTCTCTGTCTCGCCATACCGCCGTCCTCCTCCTACCTCACCATGAGCAGCTTCGCCTACCAAAAGCTAAAGAAGC
TCCCGCCCCCACCGCCTCCCGCCAGCGACCAGGAGGACGCGCACTACGCCGTCGCCGCCGCGCAGGACCACTACTACCGC
CACGCGGCGGCCGCGATCATCGCCAGCAGGAGGACGTGGCGGAGCCGCCGGTCATCCTCAGGCACCGGGCCGCGCCGGCG
CGGCAGGCCTCTGAGGATCTCGAGCCTGGCGCGGGCGCTGCGTCGGAGGGCAGCGGCCGTGGGTGGCAGGGTCCGGGCGT
CGGTGACCCGGGTGGTGACAAGGCTCAAGGAGGGCGGGCCCTGCGTGGCCGACCTCTTCGCCGGAAACTACATGTTCCTG
CAGGTCACGCCGTCGATGGCCGCGCCCGCCGCGGCCGGGGTCGGCAAGGGGGCGTTCCTGCCATACTACCTCGCCGTCAA
GGGCAAGGCCGCCGGCGCCGGCGCCGTGCACGGCTTGATCCGCGCCTAGCTCTACTTGTACAGAGAGCGAGTTGTTTGCT
TTTGTTCTGTCTTGTGCATGATTTAATTATAAGCAAGTGGGTTTGCTTTGTGTAACTGGGAGATGTGGATCAAACCTGCT
GTGTCCAAAATAATCTGTAAAGGGAAACTAAATAACTCTTCACTAGTGCTTTCTATAATAAATAATGTGTGAAGG-----
-----------------------------------------------GAATTTAAATTACTTTTCACTAGTGCTTAGTAT
AAGAATTTGTACGTAGCT---------------------------------CGATTACCCTGTGTTAATTACAGTTAGTT
TTCACTTTTCAATGAACGGTTGATGCTGAGAACTAAGTAACTACTAGCTGTTGAGCATGTACGCG---------------
-----------------------------------------------------------TGCATTTGGCACTTGGTAGGT
CACTCAGAAGCTATTAG------------ATTATTATATTTATGGATGGTACTTACGTACGTAGCTGTACCTGCTTGCTG
TCCTTGA-------------------------------------------------------------------------
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>chr3B_406
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----------------ATCACGCAGCAGTCCGATCGATCGAGTCAGCAGCCAACAAACGGTGTCCTTGTGAAAAACAGTG
CCCTGCCCCTGCCTATCCATTCATCCA-TCCATCGCCCCAACCACATTTGCGCCCTCCATAACTCCGGCCCCGCCGCGCG
CCGCCGTCCCGATCACCAACCCAGCTTTACCGAGCTTAGCCGACGTGACAGCCGATCTGTAGCACTAGCGCACGCAACTC
CGGTAAACTGAGCTATACCAGGTTCACGCTCGAGTACGAGCTGAATTTAGCTGGTTCACGCAAAGATCATGTGCGGCTTC
GTTTCAAGTAGCTCGCTGC-CTGCCTGTCCG--------GTACATGGACAGAACTGGCGGGCCGGTAGTGTCGATCCTGC
CAGC----CATGGTTGATGGTGGCTCCCGGTCTCGGTCGGCAATGCGACGTTGTCACGGACCCATGGGCCATGGCGTACA
CGGCGACGTGTAAGGCCCGGGACATCAGATCAGTAG--CTACTAGTA---GAGTGGTAGTACACGTTTGGTTGAGCCATC
ATTCATCACCGGCCACAGCCACCACCCCTGGCTTAGCTTAATTAGCTACGTACACTCTGCTTCTTCA-----CTTCTTCC
ACACTCTATCTGTCTAGCCATACCGCCGTCCTCCTCCTACCTCGCCATGAGCAGCTTCGCCTACCAGAAGCTCAAGAAGC
TCCCGCCCCCACCCCTTCCCGCCACCGACCAGCAGGACGCGCACTACGCCGTCGCCGCCGCGCAGGACCACTACTACCGC
CACGCGGCGGCCGCGATCGTCGCCAGCAGGAGGACGTGGCGGAGCCGCCGGTCGTCCTCGGGCGGTGGCCCGCGGCGGCG
CGGTAGGCCTCTGAGGATCTCGAGCCTGGCGCGGGCGCTGCGGCGGAGGGCGGCCGCGGTGGGCGGCAGGGTGCGCGCGT
CGGTGGCCCGGGTGGTGACTAGGCTCAAGGAAGGCGGTCCCTGTGTGGCCGACCTCTTCGCCGGCAACTACATGTTCCTG
CAGGTCACTCCGTCGATGGCCGCGCCCGCCGCGGCCGGGGTCGGTAGGGGGGCCTTCCTGCCATACTACCTTGCCGTCAA
GGGCAAGGCCGCCGGCGCCGGCGCCGTGCACGGCTTGATCCGCGCCTAGTTCTACTTGTACAGAG--CGAGTTGTTCGCT
TTTGTTCTGTCTTGTGCATGATTTAATTATAAGCAAGTGGGTTTGCTTTGTGTAACTGGGAGATGTGGATCAAACCTGCT
GTGTCCAAAATAATCTGTAAAGGGAAACTAAATTACTTTTCACTAGTGCTTTCTAAAATAAATAATGTATAAAGGGAATC
TAAATTACTTTTCACTAGTGCTTTCTATAATAAATAGTGTGTAAAGTGAATCTAAATTACTTTTCACTAGTGCTTAGTAT
AAGAATTTGTACGTAGCTTTCCCGCCAAAAAAAAAGAATTTGTACGGAGCTTGATTACCCTGTGTTAATTACAGTTAGTT
TT-------GAATGAACGGTTGATGCTGAGAACTGGGTAACTACTAGCAGTTGAGCTATGTATGCATGCGTGCATTTCGG
ACTTTGGTAGGTCACATGGACTTGCTTTGCACGG-----CTTGAGTACATATATTTGACTGCATTCGGTACTTGGTAAGT
CACTCAGAAGCTATTAG---------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr3B_2037
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--CTTGTTTTTTTCGATAAAGGGTGGATTTTATTAACTCAAAATGTAGTATCAAGAGGATACAA-TACAATGAGCACACA
CCCGG--CCTCTGCATAGTTAGGGTGCACACAGCCAACAAAAACTCACGCGCACAAAAACACGCCAGC--AA----CAAA
GTC-ATATAGGACCAAAGCTATGTATA-GGCGATGAAAAAAG--AAAA-AAGCCTCAAAG--ACCATATCCGCGATGGGC
AAACTAGAGAAATGCCCGTATCCGCACCATTCATCTCATGACACCATACGGACGACGAGGTTCTTCAACAGCAACGCCTT
CAGGAATGGAGCGACACTTGAGCGTCGCCATCACCGGATCCAACCACCAAGGCTAGGATCTAGGTTTTCATCCTGAAGAA
TCAGTCTGAGCATTCCGAACAATGCCTTGAACAAGGTAACGACATAAAAATGTCGCCATTGCCAGGTATACCCAACTCGG
GGCAGACCTAGGCTTTCGCCCTGGCACTCAAAGACCAGATGCTCAAGTAGCACCACCATCGAAGTCACTGACGTGTTGTC
GCCACCACTTTTCCGCAATACCAGCAGCTACATGCGATGTGAC------CGCCACCGCCGCACAACCATCCCTCTGCATC
AAGACATCGTTCATAGTTTGCATATCCCCGCC--GAAATCGACCA--
>chr1A_2042
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-------ATTTTTTGATAAATGATGGATTTTATTAACTCAAAATGCAGCATCAAGAGGATACAAGCACAATGAGCACACA
TCCGGGGCCTCTGCATAGTTAGGATGCACACAACCAACACAAACTCACGCACACAAAAACACGCCAGC--AAATAGCAAA
GTCAATATAGGACCAAAGCTATGTGTA-GGCGATGAAAAAAG--AAAA-AAGCCCCAAAGCGATCATATCCGCGATGGGA
AAACTAGAAAAATG-CCGTATCTGCACCATTCATCTCATGACACCACACGGACGACGAGATTCTTCAACAGCAACGCCTT
CAGGAAGGGAGCGACCCTTGAGCGT-GCCATCACCGGATCCAACCACCAAGGCTAGAATCTAGGTTTTCACCCTGAAAAA
TTAGTCTGAGCATTCCGAACAATGCCTTCAACAAGGTAACGACATAAAAATGTCGCCATTGCCAGGTATACCCAACTCGG
GGCAGACCTAGGCTTTCGCCCCGGCACTC-GAGACCAGATGCTCAAGTAGGACCACCATCGAAGTCACTGACGTGTCGTC
GCCACCACTTTTCCGCTATACTAGCAGCTACATGCGATGTGAC------CGCCGCCGCCGCACAACCATCCCTCTGCATC
AAGACATCGTTCATAGTTTGCATATCCCCGCC--GAAATCGACCACC
>chr3A_2043
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--------TTTTTCGACAAAGAGTGGATTTTATTAACTCAAAATGTAGCATCAAGAGGATACAAACACAATGAGCACACA
CCCGG--CCTCTGCATAGCTAAGATGCACACAGCCAACACAAACTCACGCACACAAAAACACGCCAGC--AA-TAGCAAA
GTC-ATATAGGACCAAAGCTATGCATA-AGCGATGAAAAAAAGAAAAA-AAGCCCCAAAGCGATCATATCCACGATGGGC
AAACTAGAAAAATGACCGTATCTGCACCATTCATCTCATGACACCACACGGACGACGAGGTTCTTCAACAGTAATGCCTT
CAGGAAGGGAGCGACACTTGAGCGTCGCCATCACCGGATCCAACCACCAAGGCTAGAATCTAGGTTTTCACCCTGAAGAA
TCGGTCTGAGCATTCCGAACAATGCCTTCAACAAGGTAACAACATAAAAATGTCGCCATTGCCAGGTATACCCAACTCGG
TGCAGACCTAGGCTTTCGCCCCGACACTCAGAGACCGGATGCTCAAGTAGCACCACCCTCGAAGTCACTGACGTGTTGTC
GCCACCACTTTTCCGCGATACCAGCAGCTACATGCGATGTGACCGCCATCGCCACCGCCACACAACCATCCCTCTGCATC
AAGACATCGTTCATAGTTTGCATAACCCCGCC--GAAATCGACCACC
>chr2B_2043
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--------TTTTTCGATAAAGGGTGGATTTTATTAACTCAAAATGTAGTATCAAGAGGATACAAATACAATGAGCACACA
CCCGG--CCTCTGCATAGCTAGGATGCACACAGCCAACACAAACTCACGCACACAAAAACACGCCAGC--AA-TAGCAAA
GTC-ATATAGGACCAAAGCTATGTATA-GGCGATGAAAAAAG--AAAA-AAGCCTCAAAGCGATCATATCCGCGAT-GGC
AAACTAGAAAAATGACCGTATCCGCACCATTCATCTCATGACACCACACGGACGACGAGGTTCTTCAACAGCAACGCCTT
CAGGAAGGGAGCAACACTTGAGCGTCGCCATCACCGGATCCAACCACCAAGGCTAGGATCTAGGTTTTCACCCTGAAGAA
TTAGTCTGAGCATTCCGAACAATGCCTTCAACAAGGTAACGATATAAAAATGTCGCCATTGCCAGGTATACCCAACTCGG
GGCACACCTAGGCTTTCACCCCGACACTCAAAGACCGGATGCTCAAGTAGCACCACCATCAAAGTCACTGACGAGTTGTC
GCCACCACTTTTCCGCAATACCAGCAGCTAGATGCGATGTGACCGCC------GCCGCTGCACAACCATCCCTCTGCATC
AAGACATCGTTCATAGTTTGCATATCCCCGCCAAGAAATCGACCACC
>chr2D_2043
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--------TTTTTCGATAAAGGGTGGATTTTA---ACTTAAAATGCAGCATCAAGAGTATACAAGCACAATGAGCACATA
CATGG--CCTCTGCATAGTTAGGATGTACACACCCAACACAAACTCACGCACACAAAAACACGCCAGC-AAA-TAGCAAA
GTC-ATATAGGACCAAAGCTATGTGTA-GGCGATGAAAAAAG--AAAA-AAGCCCCAAAGCGATCATATCCGCGACGGGC
AAACTAGAAAAATGACCGTATCTGCACCATTCATCTCATGACACCACACGGACGACGAGGTTCTTCAACAGTAACGCCTT
CAGGAAGGGAGCGACACTTGAGCGTCGCCATCACCGGATCCAACCACCAAGACTAGAATCTAGGTTTTCACCCTGAAGAA
TCAGTCTGAGCATTCCGAACAATACCTTCAACAAGGTAACGACATAAAAATGTCGCCATTGCCAGGTATACCCAACTCGG
GGCAGACCTAGGCTTTTGCCCCGACACTC-GAGACCGGATGCTCAAGTAGCACCACCATCGAAGTCACTGGCATGTTGTC
GCCACCACTTTTCCGTGATACCAGCAGCTACATGCGATGTGACCGCC------GCCGCCGCACAACCATCCCTTTGCATC
AAGACATCGTTCATAGTTTGCATATCCCCGCC--GAAATCGACCACC
>chr5B_2043
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--------TTTTTCGATAAAGGGTGGATTTTATTAACTCAAAATGTAGTATCAAGAGGATACAAATATAATGAGCACACA
CCCGG--CCTCTGCATAGCTAGGATGCACACAACCAACATAAACTCACGCACACAAAAACATGCCAGC--AA-TAGCAAA
GTC-ATATAGGACCAAAGCTATGTATA-GGCGATGAAAAAAG--AAAG-AAGCCTCAAAGCGATCATATCCGTGAT-GGC
AAACTAGAAAAATGACCGTATCCGCATCATTCATTTCATGACACCACACGGACGACGAGGTTCTTCAATAGTAACGCCTT
CAGGAAGGGAGCAACACTTGAGCGTCGCCATCACCGGATCCAACCACCAAGGCTAGGATCTAGGTTTTCACCCTGAAGAA
TCAGTCTGAGCATTCCGAACAATGCCTTCAACAATGTAACGATATAAAAATGTCGCCATTGCCAGG-ATACCCAACTCGG
GGCACACCTAGGCTTTCACCCCGGCACTCAAAGACCGGATGCTCAAGTAGCACCACCATCGAAGTCACTGACGTGTTGTC
GTCACCACTTTTCTGCAATACCAGCAGCTAGATGCGATGTGACCGCC------GCCGCCGCACAACCATCCCTCTGCACC
AAGACATCGTTCATAGTTTGCATATCCCCGCCAAGAAATCGACCACC
>chr1A_2043
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--------TTTTTCGACAAAGGGTGGATTTTATTAACTTAAAATGCAGCATCAAGAGGATACAAACACAATGAGCACACA
CTCGG--CCTCTGCATAGCAAGGATGCACACAGCCAACACAAACTCACGCACACAAAAACACGCCAGC-AAA-TAGCAAA
GTC-ATATATGACCAAAGCTATGTGTA-GGCGATGAAAAAAG--AAAA-AAGCCCCAAAGCGATCATATTCGCAATGGGC
AAACTAGAAAAATGACCGTATCTGCACCAT-CATCTCATGACACTATATGGACGAAGAGGTTCTTCAACAGCAATGCCTT
CAGGAAGGGAGCGACACTTGATCGTCGCCATCACCGGATCCAACCACCAAGGCTAAAATCTAGGTTTTCACCCTGAAGAA
TCAGTCTGAGCATTCCGAACAATGCCTTCAACAAGGTAATGGCATAAAAATGTCGCCATTGCCAGGTATACCCGACTCGA
GGCAGACCTAGGCTTTCGCCCCGGCACTC-GAGACCGGATGCTCAAGTAGCACCACCATCGAAGTCACTGACGTGTTGTC
GCCACCTCTTTTCCGCGATACCAGCAGCTACATGCGACGTGACCACC------GCCGTTGCACAACCATCCCTCTGCATT
-AGACATCGTTCATAGTTTGCATATCCCCGCC--GAAATCGACCA--
>chr4D_2044
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---------TTTTCGACAAAGGGTGGATTTTATTAACTCAAAATGTAGCATCAAAAGGATACAAACACAATGAGCACACA
CCCGG--CCTCTGCATAGCTAGGATGCACACAACCAACACAAACTCACGCACACAAAAACACGCCAGC-AA--TAGCAAA
GTC-ATATAGGACCAAAGCTATGCATAGGGCGATGAAAAAAG--AAAA-AAGCCCCAAAGCGATCATATCCGCGATGGGC
AAACTAGAAAAATGACCGTATCTGCACCATTCATCTCATGACACCACACAGACAACGAGGTTCTTCAACAGTAATGCCTT
CAGGAAGGGAGCGACACTTGAGCGTCGCCATCACCGGATCCAACCACCAAGGCTAGAATCTAGGTTTTCACCCTGAAGAA
TCGGTCTGAGCATTCCGAACAATGCCTTCAACAAGGTAACGACATAAAAATGTCGCCATTGCCAGGTATACCCAACTCGG
GGCAGACCTAGGCTTTCGCCCCGACACTCAGAGACCGGATGCTCAAGTAGCACCACCCTCGAAGTCACTGACGTGTTGTC
GCCACCACTTTTTCGCGATACCAGCAGCTACATGTGATGTGACCGCC------ACCGCCACACAACCATCCCTCTGCACC
AAGACATTGTTCATAGTTTGCATATCCCCGCC--GAAATCGACCACC
>chr1D_2096
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-------------------------------------------------------------CAAACACAATAAGCACACA
CCCGG--CCTCTGCATAGTTAGGATGCACACAGCCAACACAAACTCACGTACACAAAAACACGCCAGCAAA--TAGCAAA
GTC-ATATAGGAGCAAAGCTATGTGTA-GGCGATGAAAAAAC---AAA-AAGCCCCAAAGCGACCATGTCCGTGATGGGC
AAACTAGAAAAATGACCGTATCTGCACCATTCATCTCATGACACCACACGGACGACGAGGTTCTTCAACAGCAACGCCTT
CAGGAAGGGAGCGACACTTGAGCGTCGCCATCACCGGATCCAACCACAAAGGCTAGAATCTAGATTTTCACCCTGAAAAA
TCAGTCTGAGCATTCCGAACAATGCCTTCAACAAGGTAACGACATAAAAATGTCGCCATTGCCAGGTATACCCAACTCGG
GGCAGACCTAGGCTTCTGCCCCGGCACTC-GAGACCGGATGCTCAAGTAGCACCACCATCAAAGTCACTGACATGTTGTC
GCCACCACTTTTCCACGATACCAGCAGCTACCAGTGATGTGACCGCC------GCCGCCGCACAACCATCCTTCTGCATC
AAGA-------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------
--S-SS-SSSSSSS-S-----------S----------------------------SSSSS-------------------
--------------------------------------------S-----------------------------------
---------S-------------S---------------------------------------------------S----
--------------------------------S-----------------------------------------------
----------SSSS-----------------SS-----------------------------------------------
---------------------------S----------------S-----------------------------------
----------------------S-------------------------------------------S-------------
--------------------------------------S---------------S--------------------S----
--------------S--------S---S-S-SSSSSSSS-------S---------------------S-----------
--------------------------------------------------------------------------------
------------------------------SS-S-SSS------S-----------------------------------
----------------------------S---------------------------------------------------
-------S----------------------------------------------------S---S---------------
----------------------------------------------------S--------S------------------
-----S--S--------------------------S--------------------------------------------
---S-----S--------------------------------------------S-------------------------
-S-------------------------------------------------S----------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S------------------S------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
----------------S------------SSS--------------------------------------S--------S
-------------------S--------S-S-S-SSSSS--------------S--------------------------
------------S----SSSSSSSSSSSS---------------S-------------------------------S---
--------------------------------------------------------------------------------
-------------------S-----------------------S------------------------------------
------------------------------------------------S------------S------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
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---------------------------------------------S--S-------------------------------
------------------------------S----------------
>forward_917
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-----------------CGCGACATCAGATACGAGCT-------------------------------------------
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>reverse_2484
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---AAAGGGAGCGACACTTGAGC---------------------------------------------------------
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-----------------------------------------------
