>input_sequence_71059
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------------------------------------------------ATGGTTTTCCTTCAGACAGAGATGTGCTGGAA
TGTACTGATCTCAGCTGGTCAGCTGAGCCCCAAGGGTCTGCTGCTCCGCAAGTCTATCATTGTGCGTCTTCTGGAGGACG
TAACCAACAGGAAGGCCTCCAAGGAGCATGGCTACTACATTGCTGTCAATGGGCTGAAGGAGATATCTGACGGGAAAATT
CGTGAGCTGACCGGAGATGTTCTTTTCCCGGTCACATTCACCTGCATCACTCAGAGGCCTATGAAGGGCGATATCTTGGT
CGGCTCCGTGGAGAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGGCCGATGGAAAACATCTTCATGCCGGCGAAGT
CAATGAGCGACTACAAGTACATGGGCGGTGAGAACCCCATGTTCATGAAGGACTACTCGAAGCTGGAGAAGCACACCATC
GTGCGCTTCAAGGTCATGGGGTTCTGCTGGATGGAAGCAGATCGCCAGTTCCGGCTCCTCGCGACGATGGCTGGTGATTT
CCTTGGGCCGCTGTGATCAGCTTCGACAGGT-TAAC----CATGGTCCCTGATTTATATTTTGTTATCCTGGTGGGTGAT
TGGATGGGTCTGCGATGTGTTACGTCTAATCTAATTTGCTGTCTGTACTTCGTTGTCGTGATGACTGATGGCACATAGTT
GTTTTAACTTGTCGAGTTGATGCGAGCTCTAGCTGTGATGCCA-------------------------------------
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>chr1A_1_TraesCS1A01G106800
CCATTGGTCCCGGTTCTGGACTGAACCGGGACTAATGGGCTGACCCGGCCTAGACCAAAGCCCTGTTTTCTACTAGTGAG
TGCTAATAGTTGGGATCTTGGTAGTTGGGATGGTAGACCACAGCAAGAGATGTCCTCTCTAGTGTTGACTTAAGCATAGG
CAAATGAACTAGCCGGGA---TCTTGTGTATGCAATAACGCTACAGACCACACACGGTCCAATACACCGGTGCCTGCGTG
TGCATGTCAATTGCGCATAGAGGTGTTTGATTGCTGAGCTGTAGCCGCGTTGGTTAAATGGGAATCACCTTATTGTTTTG
GATTTTCTTATTTTCCTTAACTATAGTTTGTATTGAGGTTGGTGCGAAATTTTCATACAAGAATGCTTCAGCACTATTCT
TTTGGTAAA-TTTGTATAATTTGGCAAAGAGTTCCCTCTTTAGAATAATTGTGTATGTTATACAGCAAATAGGTTTAAAT
TCCTGAGAGTGTATAATTCACAGCAAATAAAAACCATGAATGTGAGCTTTCACTATAGCATGCGTAGTATATTATTTTGT
TTTCTATAAAAAGTAGAAACACCATGGCTCTGTGTTCATCTGTAGGAAATCTCAAGTAGAAACACTTTGTCCTTTACATT
TCCCCCTCTTTACTACTACCTCCGATCC--------------------------------------TAATAAGTGTCGCA
GTTTTGAACTAACTCCAGTTCAAAACTGTGAAACTTATTTTGGATCGTAGGGAGTACTCATTCTGTAAAGAAATATAAGA
GCGTCTAGATCACTACTTTT---------------------------------------ACGGAGGGAGTAGTATTTTCT
TTATTGCTGATAGTTTGATTTGATGTTTGTTTATGGACAGTAAATTTGCAATGGGTTGCCCTATATAATAGAAGGAAATC
TCGTTTTTGTTTTTCTGCCCTGTAAT-CCTAAAGCACGAAGC---ATACTATTCAGTGAAGAATTGTTGCACCACTTGAA
GGCCTATG---TTCATGTTTAAATTTGACTTTTGGCAGGTAGTCAACCATGGTTTTCCTTCAGACAGAGATGTGCTGGAA
TGTACTGATCTCAGCTGGTCAGCTGAGCCCCAAGGGTCTGCTGCTCCGCAAGTCTATCATTGTGCGTCTTCTGGAGGACG
TAACCAACAGGAAGGCCTCCAAGGAGCATGGCTACTACATTGCTGTCAATGGGCTGAAGGAGATATCTGACGGGAAAATT
CGTGAGCTGACCGGAGATGTTCTTTTCCCGGTCACATTCACCTGCATCACTCAGAGGCCTATGAAGGGCGATATCTTGGT
CGGCTCCGTGGAGAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGGCCGATGGAAAACATCTTCATGCCGGCGAAGT
CAATGAGCGACTACAAGTACATGGGCGGTGAGAACCCCATGTTCATGAAGGACTACTCGAAGCTGGAGAAGCACACCATC
GTGCGCTTCAAGGTCATGGGGTTCTGCTGGATGGAAGCAGATCGCCAGTTCCGGCTCCTCGCGACGATGGCTGGTGATTT
CCTTGGGCCGCTGTGATCAGCTTCGACAGGT-TAAC----CATGGTCCCTGATTTATATTTTGTTATCCTGGTGGGTGAT
TGGATGGGTCTGCGATGTGTTACGTCTAATCTAATTTGCTGTCTGTACTTCGTTGTCGTGATGACTGATGGCACATAGTT
GTTTTAACTTGTCGAGTTGATGCGAGCTCTAGCTGTGATGCCAACGATATCTCGCTCCATATTTCAACACATCGGTGCGC
GGGCGTGGGTGTGTGTGGTTTGAATTTACTAGGATC----ATGTGCATCGGAATTTCTATCCCAGGCAAAAATGCATAAT
CCATTTACTCGGACTTTAGAAACTCTATAATAAACATACTCATGCAGGAAGCAACAGCATGGCAAGTCCACAAGCAGGCG
ACTTCGAGCGCCAGGTTCCCGAGTAAATCACAATTGACATGACTGGGGGAACCTTAAACCTTGTAAAAAGAATACGAAAC
TACTATACGGGATGACGTTTCCTTAGCCGATTTGATGATGATAGTAAATCTGCGGCTGGGCTGCAATTTCTACTATGCAT
GGACGGTTCTAACCATAGCGTCATGCAAACATCGGCTGGTGCCTGGTTCTGATGCACAAGACTCCTGAACCTCGTGTACA
GGTGGAGGTGGGGCGATACAAGGACCCGTCAGCAATACTTGAATGATGACACTTACGATGGTGGGTAACAACACTTCTGG
TGCAAAATCTGTTTGAGTTCAGAGGAGGATATGATGCATGCATTACTGAACTGTACCCATGCGAGAAGGTTTTGGAACGA
AGCCCCGCAGTGACTGCATGTTAAACGACCAGACCTACACCCTCTTACTTGGGTTAAGGATGTCTTGTGTGAGTCTCTGT
TTTCAGATTCTGATAGAGCAAAACTTGTGTCTATTATGTGGGCTATTTGGACTTCACGCAACAACATCACACATGACAAA
GGAGAGTTTGATCCTGTTCGGTCCATGAAGCACATACAGGAAGCTTTAGCGATTTTAGAGTTACCTCAAGATCATGCTCG
GATCTTGCCTGGTCATGGTTGGAGGCCGCCGGATGATGGGTGGATAAAAATCAATGTTGACGGTAGCATTGCCATGGAGT
CCCGCCGAGGAGGGGTTGGAGGGGTAGCACGTTCTCCGTCTGCTTTCAAGGCTGCATGGTGTAAGCCATACTATGGAATC
ACAGACC
>chr1D_83
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--CTAGTAGTTGGAATCTTGGGAGTTGGAATGGTAGACCACAGCAAGAGATGTCCTCTCTAGTGTTGACTTAAGCACAGG
CAAATGAACTAGCCGGGACGATCTTGTGTATGCAATAACGCTACAGACCACACACGGTCCAAAACACTGGTGCCTGCGTG
TGCATGTCAATTGCGTATAGAGGTGTTTGATTGCTGAGCTGTAGCTGCGTTGGTTAAATGGGAATCACCTTATTGTTTTG
GATTT-CTTATTTTCCTTAACTATAGTTTGTATTGAGGTTGGTGCGAAATTGTCATACAAGAATGCTTCAGCACTATTCT
TTTGGTAAA-TTTGTATAATTTGGCAAAGAGCTCCCTCTTTAGAACAATTGTGTATGTTATACAGCAAATAGGTTTAAAT
TCCTTAGAGTGTATAATTCACAGCAAATAAAA-CCATGAATGTGAGCTTTCACTGTAGCATGCGTAGTATATTATTTTGT
TTTCTATAAAAAGTAGAAGCACCATGGCTCTGTGTTCATCTGTAGGAAATGTCAAGTAGAAACACTTTGTCCTTTACATT
TCCCCCTCTTTACTACCACCTCCGATCC--------------------------------------TAATAAGTGTTGCA
GTTTTGAACTAACTCCAGTTCAAAACTGTGAAACTTATTTTGGATCGTAGGGAGTACTCACTCTGTAAAGAAATATAAGA
GCATTTAGATCACTACTTTT---------------------------------------AGGGAGGGAGTAGTATTTTAT
TTGTTGCTGATAGTTTGATTTGTTGTTTGTTTATGGACAGTAAATTTGCAATGGGTTGCCCTATATAACAGAAGGAAATC
TCGTTTTTGTTTTTCTGCCCTGTAAT-CCTTAAGAACGAAGC---ATAATATTCATTGAAGGATTGTTGCACCACTTGAA
GGCTGATG---TTCATGTTTAAATTTGACTTTTGGCAGGTAGTCAACCATGGTTTTCCTTCTGGCAGAGATGTGCTGGAA
TGTACTGATCTCAGCTGGTCAGCTGAGCCCCAAGGGTCTGCTGCTCCGCAAGTCTATCATTGTGCGTCTTCTGGAGGACG
TAACCAACAGGAAGGCCTCCAAGGAGCATGGCTACTACATTGCTGTCAATGGGCTGAAGGAGATATCTGATGGGAAAATT
CGTGAGCTGACCGGAGGTGTTCTTTTCCCGGTCACATTCACCTGCATCACTCAGAGGCCTATGAAGGGTGAGATCATGGT
CGGCTCCGTGGAGAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGGCCAATGGAAAACATCTTCATGTCGGCGAAGT
CAATGAGCGACTACAAGTACATGGCCGGCGAGAACCCCATGTTCATGAAGGACTACTCGAAGCTGGAGAAGTACACCATC
GTGCGCTTCAAGGTCATGGGGTTCTGCTGGATGGAAGCAGATCGCCAGTTCCGGCTCCTCGCGACGATGGCTGGTGATTT
CCTTGGGCCGCTGTGATCAGCTTCGACAGGT-TAAACATGCATGGTCCCTGCTTTATATTGTGTTATCCTGGTGGATGAT
TGGATGGGTCTGAGATGTGTTACGTGTTACTTGCA-----GTCTGAACTTCGTTGTCGTGATGACTGATGGCACATAGTT
GCTTTAACTTGTGGAGTTGATGCGAGCTCTAGCTGTGATGCCAACGACACTTCGCTCTATATTTCAACACATCTGTGCGC
AGGCGTGGGTGTGCGTGGTTTGAATTTACTAGGATCTGCAATGTGCATCGGAGTTTCTATCCCAGGCAAAAATGCATAAT
CCATTTACTTGGACTTTAGAAACTCTAATAA-------------------------------------------------
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>chr1B_310
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------------------------------------------------------------------------TTGTTTTG
GATTTACTTGTTTTCAGTAACTATTGTTTGTATTGAGGTTGGTGCGAGCTTTTCATATAAGAATGCTTCAGCACTATTCT
TTTGGTAAAATTTTTATAATTTGGCAAATTGATCCCTTTTTAGAATCGTTGTGTACGTTATACAGCAAATAGGTCTAAAT
TCCTGAGAATATATTATTCACAGCAAATAAAAACCATGAATATGAGCTTTCATTGTAGCATGCCTAGTATATTATTCTGT
TTTCTAGAAAAAGTAGAAACACCATGGTTC--TGTTCATCTGTAGGAAATCTCAAGTAGAAACACTCTGGCCAGCAT-TT
TCCCCCTCTTTACTACTACCTCCGATCCATAATAAGTGTCGCATACTCTTGCGTATTCTACAAAAATTATAAGTGTCGCA
GTTTGAA-----------TTCAAAACTGCGACACTTATTATGGATCGGAGGTAGTACTCCCTCCGTCCCAAAATAAGTGT
CTCAACTTTGTACTAGCTCTAATACAAATTTGTGCTAAGCTCAAGACAGTTATTTTGAGACGGAGGAAGTAGTATTTTAT
TTGTTGCTCATAGTTTGATTTAATGGTTGTTTTTGGACGGTAAATTTGCAATGGGTTGCG-TATATAACAGAA-GAAATC
TCGTTTTTGTTTTTCTGCCCTGTAAT-CCTTAAGCACGAAGC---ATAATATTCAGTGAAGGATTGTTGCACCACTTGAA
GGCCTATG---TTCATGTATAAATTTGACTTTTGGCAGGTAGTCAACCATGGTTTTCCTTCAGGCAGAGATGTGCTGGAA
TGTACTGATCTCAGCTGGTCAGCTGAGCCCCAAGGGTCTGCTGCTCCGCAAGTCTATCATTGTGCGTCTTCTGGAGGACG
TAACCAACAGGAAGGCCTCCAAGGAGCATGGCTACTACATTGCTGTCAATGGGTTGAAGGAGATATCTGATGGGAAAATT
CGTGAGCTGACCGGAGACGTTCTTTTCCCGGTCACATTCACCTGCATCACTCAGAGGCCTATGAAGGGTGAGATCTTGGT
CGGCTCCGTGGAGAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGGCCAATTGAAAACATCTTCATGTCGGAGAAGT
CAATGAGCGACTACAAGTACATGGGTGGCGAGAACCCCATGTTCATGAAGGACTACTCGAAGCTGGAGAAGTACACCATC
GTGCGCTTCAAGGTCATGGGGTTCTGCTGGATGGAAGCAGATCGCCAGTTCCGGCTTCTCGCGACGATGGCTGGTGATTA
CCTTGGGCCGCTGTGATCAGCTTCGACAGGT-TAAACATGCATGGTCCCTGCTTTGTATTTTGTTATCCTGGTGGATGAT
TGGATGGGTCTGCAATGT--------------------------------------------------------------
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>chr1A_830
TTATG---------------------------------------------------------------------------
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------------------------------------ACAGTATATTTGCAATTGTATGTTCTCTATAACAGAAGAAATGC
GTTTTAAATTTTTCCTGCC-TATAATAGCTTAAACATGTTTCTCTATGGTATTCAGTGAAGGATTGTTGCACCACCTGAA
GGCTGATATTATTCATGTATAAATTTGACTTTTGGCAGGTTGTCAACCATGGTTTTCCTTCAGGAGGAGATGTCTTGGAA
CGTGCTGATCTCACCGGACCAGCTGAGCCCCAAGGGCCTGCTGCTCCGCAAGTCCATCATCGTGCGTCTTCTGGAGGACG
TCACCAACAGGAAGGCCTCCAAGGAGCATGGCTACTACATTGCTGTCAATGAGCTGAAGACAATATCTGAAGGGAAGGTT
CGTGAGCTGACCGGAGATGTTCTTTTCCCGGTCACATTCACCTGCATCACTCAGAGGCCTATGAAGGGGGAGATCTTGGT
CGGCTCCGTGGAGAAGATCCTCAAGCACGGCGTCTTCCTCAAATCTGGGCCAATCGAAAGCATCTTCCTGTCGGAGAAGT
CGATGAGCGACTACAAGTACATGGGCGGCGAGAACCCCTTGTTCATGAACGACCACTCGAAGCTGGAGAGGGACACCGCC
GTGCGCTTCAAGGTCATGGGGTTCCGCTGGATGGAGGCAGACCGCCAGTTCCAGCTCCTTGCGTCGCTGGCTGGTGATTT
CCTCGGGCCGCTGTGAGCTGCTTCGGAGATGCTAAA----CCTGGTCCCTGCTGTACATTTTGGTATCCTGGTGGTGGTG
GATG----------------------------------------------------------------------------
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>chr1D_830
TTATG---------------------------------------------------------------------------
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------------------------------------ACAGTATATTTGCAATAATATGTTCTCTATAGCAGAAGAAATGC
GCTTTAAATTTTCCCTGCCCTGTAAAACCTTAAGCATGTTTCCCTATCATATTCAGTGAAGAATTGCTGCACCACTTGAA
GGCTGATAT---TCATGTACAATTTTGACTTTTGGCAGGTCGTCAACCATGGTTTTCCTTCAGGAAGAGATGTCTTGGAA
CGTGCTGATCTCACCGGACCAGCTGAGCCCCAAGGGCCTGCTGCTCCGCAAGTCCATCATCGTGCGTCTTCTGGAGGACG
TCACCAACAGGAAGGCCTCCAAGGAGCATGGCTACTACATTGCTGTAAACGAGCTGAAGACAATCTCTGAAGGGAAGGTT
CGTGAGCTGACCGGAGACGTTCTTTTCCCGGTCACATTCACCTGCATCACCCAGAGGCCTATGAAGGGGGAGATCTTGGT
CGGCTCCGTGGAGAAGATCCTCAAGCACGGTGTCTTCCTCAAATCGGGGCCGATTGAAAGCATCTTCCTGTCGGAGAAAT
CGATGAGCGACTACAAGTACATGGGCGGCGAGAACCCCATGTTCATGAATGACCACTCGAAGCTGGAGAGGGACACCGCT
GTGCGCTTCAAGGTCATGGGGTTCCGCTGGATGGAGGCAGACCGCCAGTTCCAGCTCCTTGCGTCGCTGGCTGGTGATTT
CCTCGGGCCGCTGTGAGCTGCTCCGGAGATGCTAAA----CCTGGCCCCTGCTGTACATTTTGTTATCCTGGTGGTGGTG
GATG----------------------------------------------------------------------------
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>chr1B_830
TTATG---------------------------------------------------------------------------
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------------------------------------ACAGTATATTTGCAACTGTGTGTTCTCTATAGCAGAAGAAATGC
GTTTTAAATTCTTGCCTGCCTGTAAAACCTTAAGCATGTTTCCTTATGATATTCAGTGAAGAATTGCTGCACCACTTGAA
GGCTGATAT---TCATGTACAATTTTGACTTTTGGCAGGTAGTCAACCATGGTTTTCCTTCAGGAGGAGATGTCTTGGAA
CGTGCTGATCTCACCAGACCAGCTGAGCCCCAAGGGCCTGCTGCTCCGCAAGTCCATCATCGTGCGTCTTCTGGAGGACG
TCACCAACAGGAAGGCCTCCAAGGAGCATGGCTACTACATTGCTGTAAACGAGCTGAAGACGATCTCTGAAGGGAAGGTT
CGTGAGCTGACCGGAGACGTTCTTTTCCCGGTCACATTCACCTGCATCACCCAGAGGCCTATGAAGGGGGAGATCTTGGT
CGGCTCCGTGGAGAAGATCCTGAAGCACGGCGTCTTCCTCAAATCTGGGCCGATCGAAAGCATCTTCCTATCAGAGAAGT
CGATGAGCGACTACAAGTACATGGGCGGCGAGAACCCCATGTTCATGAACGACCACTCGAAGCTGGAGAGGGACACCGCC
GTGCGCTTCAAGGTCATGGGGTTCCGCTGGATGGAGGCTGACCGCCAGTTCCAGCTCCTTGCGTCGCTGGCTGGTGATTT
CCTCGGGCCGCTGTGAGCTGCTTCGGAGATGCTAAA----CCTGGCCCCTGCTGTACATTTTGTTATCCTGGTGGTGGTG
GATG----------------------------------------------------------------------------
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>SNPs
SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS---S-------S-------S------S-----------------------------------------------S---
--------------------------------------------------------------S----S------------
---------------S-----------------------------S----------------------------------
-----S--------------------------------------------------------------------------
-------------------------------S------------------------------------------------
------------------------------------------------------S-------------------------
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------------------------------------------------------------S-------------------
--S-S-------------------------------------------------------------------------S-
--S-----------------------------------------------------------------S-----------
------------------------------S-----------------S-------------------------------
---------------------------------------------------------------S----------------
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----------------------------------------------------------------------S---------
--------------------------------------------------------------------S--S--------
----------------------------------------------------------------------S---------
----------------------------S------------------------------------------S--------
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-----------------------------------S---------------S-----------------------S----
-------------------------S-S-SS-SSSSSSSS-----S----------------------------------
-S----------S----------------------------------S-SS------S---------------S------
S------------S--------------------------------------S---------------------------
---------S-----------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_67
-----------------------------------------------GCCTAGACCAAAGCCCTGTT-------------
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>reverse_1676
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---------------------------------------------------------------------------GTGAT
TGGATGGGTCTGCGA-----------------------------------------------------------------
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>forward_228
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------------------------------------------------CACACACGGTCCAATACACC------------
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>reverse_2200
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---------------------------------------TGCCTGGTTCTGATGCACAA---------------------
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