>input_sequence_71032
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-----------------------------ATGTGTCCGATCAAGAAGGAGATGAGCGGGGAGTCCGGC------TCGCCG
TGCAGCGGGGAGAACTTCTACTCGCCCTCCACGTCGCGGGAGCATCAGCAGGCGAAGCAGGCGGCGTGGACGTCGGCGCC
GGCGAAGCGGCCGGCGGGGCGGACCAAGTTCAGGGAGACGCGGCACCCGGTATACCGCGGCGTGCGGCGCAGGGGCAATG
CCGGGCGGTGGGTGTGCGAGGTGCGCGTGCCCGGCAGGCGCGGGAGCAGGCTCTGGCTCGGCACCTTCGACACCGCCGAG
GCCGCCGCGCGCGCCAACGACGCCGCCATGATCGCGCTCTCCGCCGGGGGCGCGGGCTGCCTCAACTTCGCCGACTCCGC
CGAGCTGCTCGCCGTGCCGGCGGCCTCCTCGTACCGCAGCCTCGACGAGGTCCGCCACGCCGTCGTGGAGGCCGTCGAGG
ACTTCCTGCGGCGGGAGGCGATCGCCGAGGAGGACGCGCTCTCGGGCACCTCGTCGTCCGCGCCCTCCTCCCTCACCGAC
GACGAGTCGTCCTCTTCCCCGCCC------GAGGACTCGCCGTTCGAGCTGGATGTCCTGAGCGACATGGGCTGGGACCT
GTACTACGCGAGCCTGGCGCAGGCGATGCTGATGGCGCCGCCTTCTTCCATGGCCGCGGCGCTCGGCGATTACGGCGAGG
T---------CGATGTGCCACTCTGGAGCTACCAGAGCTAG---------------------------------------
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>chr5B_1_TraesCS5B01G313000
CAGTCCGGGTGTTTGAGACTCGTTTGAGGCGTCGGTCTGGGTCATATTTTTGTGACCGGTCAATGACCATACGTGCCACC
CGGACGTCTGAGGCTGATTTAGAGGGCTCGGCTGTAGATGCTCTAAGACCATACATAAATTACCCCTTTCTCCAAGAAAA
GGACTGCAGGCGAGGTGAAAAAAACGTTTAAACTGGA------GTACAAAAGACAACAC-CGGCGATAGGGGCTCCGTGG
TTTGCGTCTGCTCATCCACGTCAGAAATGACAATTGAAGTCGGTCACCACAACCCCCACCCCACGTGCGTCACCTAGGAG
CAAGAACTCCGCTTCCACTCTTGGTCTCCAACAT-CGAATGCGAATTCTGATTTTTGGTCCG--------CAGCCCCGAT
GGCGAAGAGATGATGAGCTTCGACGTTAAGAATTGGACGTCAAACAGCACTGACCATCTAGACCCCATCCAAAAAG----
------------------GAATCGTACCACACTGGCACCAGATACCCTCGGCTAAACCAAAACCCGAATTTGCAAACTGC
GGCTCAAAAAAAAAACCATTAACAACGACGAGGAGGTA------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AAGTAAAACGGCCGCAGGACAGGGCGCAAGGCCGCAAGTGAGC
AGGAGCTAGGCGGAAAACGATAACAGGGGCGAAGCGAAAGCAGGAAGGTAGTACTGGTCGAAGCTGTATTATAATAAC-A
AAGAAAAGAAATCTTGGGGTCACTCTCGAAGTCTCTCACTTTGCCCCCCACTTGCGTGCGCCTTCGTACGGTGCATCCCC
CCTTCGCCGGCCGTATCCAGCCTGTGTCCTCTGTCCTCTCCTCTCAGCCGCTGGCTCACTCGCCGCGCTTTGCCCCCTGC
CTCCCGCCGCGAGCCACCGCCACCTATAAGTACGC-GCTCCCGAAACCACCCCGCTCAAATTTCTCATCGCAGACCAAAA
CCACTTCACACTCGATCAACCC---AAG---------AGCACCCAGGACCTCCAAGCCGGCCAAGGAACAGAGCATCGAA
GGAA------------------GAAGAAGATGTGTCCGATCAAGAAGGAGATGAGCGGGGAGTCCGGC------TCGCCG
TGCAGCGGGGAGAACTTCTACTCGCCCTCCACGTCGCGGGAGCATCAGCAGGCGAAGCAGGCGGCGTGGACGTCGGCGCC
GGCGAAGCGGCCGGCGGGGCGGACCAAGTTCAGGGAGACGCGGCACCCGGTATACCGCGGCGTGCGGCGCAGGGGCAATG
CCGGGCGGTGGGTGTGCGAGGTGCGCGTGCCCGGCAGGCGCGGGAGCAGGCTCTGGCTCGGCACCTTCGACACCGCCGAG
GCCGCCGCGCGCGCCAACGACGCCGCCATGATCGCGCTCTCCGCCGGGGGCGCGGGCTGCCTCAACTTCGCCGACTCCGC
CGAGCTGCTCGCCGTGCCGGCGGCCTCCTCGTACCGCAGCCTCGACGAGGTCCGCCACGCCGTCGTGGAGGCCGTCGAGG
ACTTCCTGCGGCGGGAGGCGATCGCCGAGGAGGACGCGCTCTCGGGCACCTCGTCGTCCGCGCCCTCCTCCCTCACCGAC
GACGAGTCGTCCTCTTCCCCGCCC------GAGGACTCGCCGTTCGAGCTGGATGTCCTGAGCGACATGGGCTGGGACCT
GTACTACGCGAGCCTGGCGCAGGCGATGCTGATGGCGCCGCCTTCTTCCATGGCCGCGGCGCTCGGCGATTACGGCGAGG
T---------CGATGTGCCACTCTGGAGCTACCAGAGCTAGCTAGCTAGTTCGCGCCAGTTCGAATATTTTACCTTTCTT
TTCTGTCCGTCGTCTTGGCTTCCGATCGATGCCAAAAATTTGGTGCCGCTGTAGGGTCACTGCTTGCAGTTTCTGGTAAT
GTGATGGTGCGAATTGGGGAAACAGAGCATGGCTTATTGGTTTTTGACTCTTGACTTTCCACAATCAGCGATTTCACGCT
GTATAGAACACAGCCTGAGC-----ACCGGGGAATCTTTGGGCATCAGCTCAACTAACGTGAAAAAAAAACCCTGAAAAC
TGCGTATGGCTTTGGTCGAGAAATGCTTTGGC-------CAATCGGCGGCGCACGTGACAATCCTTGCCCCC-ACCAAAA
TTCTGTGAGCCGTTGGATGGGTATGTGACGGTGTAGATCAAACTCCATCGTTAGTGCCGCAAACGGGGAACTGTTTTTGT
ACCCAGCAATGCTACCCACCCCGCAAAAAATGAGTTGGCAGTTTGTATTATAATACTAAGGGCATGTACAATGGTTCTAT
CTTAAACGTGTCTTCTCTTATCTAAGAGAAGCTTTCCTGCTTGGAAATAGGGGCCCCTCTGTGTCTGTATGAATCTTTGA
CCGCACAAAATCCCCATAGCCATTTTTTCAAATTGGATTCTGAAATCAGAGGCAGCTTTTGGTACTAATCAAACAATCCA
AGAACTTCCATAACATTGGCGTGATTCAGTTTGAGCAACAGATCGTGACGTAATACATCTTCGTAATGAAAATGGAGTGA
AAACATCATGGCTTCTCCGCTTTTTGAGAATGAGCACTGTGAACTATCCGCTTCAAAAAGGATAGTTGATCGAACCGAAA
CCAACGTCAAGTACGAGTTATTAAGCTCCGAATCAAAAAAGTGTACTTCCTTTACGCTTGATGTAGGATTTACCTATTAA
TATGAAGTTCACTCTTTTGCTAACTTGAGTCCAGAAGGGAAGCGACTGATTTCCAATTCTTCTTTGCTAGCGATCGACTC
CCGTGGAATTCCAT
>chr5A_126
AGAGCC--------------------------------------------------------------------------
--------------------------------------------------ATACACAAACTAGCCCTTTCTCAAAGGAAA
ATACTGCAGGCGAAGTGAAAAACCCGTCTAAAACCCGAGTACTGTACGAAACAAAGGAGATGGTGACACTGATTCCAGG-
-TCGCATCTGCTCATCCACGTCAGAAATGACAATTGAAGTCGGTCACCACGAGCCCCAGCCCACGTGCGTCACCGAGGAG
CAAGAACTCCGCTTCCACTCTTGGTCTCCAACGAAGGAATGCGAATTCTGATTTTTGCTCTGCAGCGCGCCAGCCCCGAT
GGCGAAAAAATGATCAGCTTCGACGTTAAGACCCGGACGTCAAGCAGCACTGACCATCTAGACCCCATCCAAAAAGGAAT
CGTACTACACAGGCACCAGA----------------------TGCCCTCAGCTAAACCAAAACCCGAACTCGCAAACTGC
GGCTCC--AAAGAAACCATTAACAAGGACGAGGC---AAAGTAAAACCAGTAGTGCTATACACACGACAAGATTGGACGA
TCTTTGGACGATGCAGCACATCCGACCGTACGTACGCAGAGCAAAAACTGGATGCACCGTCAATCATCCGTCGTCCTTAG
TTCGTGCGGGCAAACTGTCGTCCGCACAGTAGTTTCGAAGTAAAACGGCCGCAAGACGGGGCGCAAGGGCGCAAGTGAGC
AGGAGCAAGGCGGAAAACGATAA---GGGCAAAGCGAAAGCAGGAAGGTAA-------------------------AATA
AAGAAAATATATCCTGGGGTCACTCTCGAAGTCTGTCAG-TTGCCCCCCACTTGCGCGCGGCTTCGTACGGTGCATCCCC
CCTTCGCCTGCCGTATCCAGCCTGTGTCCTGC-------CCTCTCG------------CTCGCCGCGCTTTGCCCCCTGG
TTTCAGCCGCGAGCCACCGCCACCTATAAGTACGCCGCTCCCGAGACCACCCTGCTCAAATTTCTCATCGCAGAGCGAAA
CCACCTCACACTCGAGCAACCC---AAAAGCATCCTCAGCAACAAGAACCTCCTAGCCGGCCAAGAAACAGAGCTTCCGT
TGGACAGC------------------AAGATGTGTCCGATCAAGAGGGAGATGAGCGGGGAGTCGGGCTCGCCGTCGCCG
TGCAGCGGGGAGAACTTCTGCTCGCCCTCGGCGTCGCCGGAGCGCCAGCAGGCGAGGCAGGCGGGGTGGACGTCGGCGCC
GGCGAAGCGGCCGGCGGGGCGGACCAAGTTCAGGGAGACGCGGCACCCGGTGTACCGCGGCGTGCGGCGCAGGGGCAATG
CCGGGCGGTGGGTGTGCGAGGTGCGCGTGCCCGGCAGGCGCGGGAGCAGGCTCTGGCTCGGCACCTTCGACACCGCCGAG
GCCGCCGCGCGCGCCAACGACGCCGTCATGCTCATGCTCGCCGCCGGAGGCGCCGCCTGCCTCAACTTCGCCGACTCGGC
CGAGCTGCTCTCCGTGCCGGTGGCCTCCTCCTACCGCAGCCTGGACGAGGTCCGCCACGCCGTCGTGGAGGCCGTGGAGG
ACTTGCTGCGGCGCGAGGCGCTCGCCGAGGAGGACGCGCTCTCGGGCACCTCCTCGTCCGCGCCCTCCCCCCTCACCGAC
GACGAGTCGTCCTCTTCGCCGCTGCCCGAGGAGGACTCGCCGTTCGAGCAGGACGTGCTGAGCGAGATGGGCTGGGACCT
GTACTACGCGAGCCTGGCGCAGGCGATGCTCATGGCGCCGCCCGCCGC---GGCTGCGGCGCTCGGCGATTACGGGGAGG
CTCACCTCGCCGACGTGCCACTCTGGAGCTACCAGAGCTAGCCGGCTAGTTCGCGCTGCTTCGAG--TTTTAGCTTTCCT
TTCTGT-CGTCGTCTTGGCTTCCGATCGATGCCAAAATTTTGGTGCTGCTGTAGGGTCACTGCTTGCGGTTTCTGGTAAT
GTGATGGTGCGAATTGGGGAAACAGAGCATGGCTT--------TTGACTCTTGACTTTCCACAACCAGCGATTTCGCGCT
GTATAGAAC-----------------------------------------------------------------------
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>chr5D_129
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------------------------------------------------CCATACATAAACTAGCCCTTTCTCAAAGAAAA
ATACCGCAGGCAAAGTGAAAAAACGTCTAAAC--GGA------GTACAAAACAAATCAC-TGGTGACACTGATTCCAGG-
-TTGCATCTGCTCATCCACGTCACAAATGACAATTGAAGTCGGTCACCACAACCCCCACCCCACGTGCGTCGCCTAGGAG
CAATAACTCCGCTTCCACTCTTGGTCTCCGACGAACGAATGCGAATTCTGATTTTTGGTCCG--------CAGCCCCGAT
GGCGAAGAAACGATCAGCTTCGTCGTTAAGAATCGAACGTCAAGCAGCACTGACCATCTAGACCCCATCCAAAAAG----
------------------GA----------------------TACCCTCGGCTAAACCAAAACCCGAATTTGCAAACTGC
GGCTCC--AAAGAAACCATTAACAACGACGAGGC---A------------------------------------------
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-------------------------------------AAGTAAAACGGCCGCAGGACAGGGCGCAAGGCCGCAAGTGAGC
AGGAGCTAGGCGGAAAACGATAACAGGGGCAAAGCGAAAGCACGAAGGCACTGGTCGTCTAGTTGCAACCCCTAATAATA
AAGAAAAGAAATGTTGGGGTCACTCTCGAAGTCTCTCAC-TTGCCCCCCACTTGCGCGCGGCTTCGTACGGTGCATCCCC
CCTTGGCCGGCCGTATCCAGCCTGTGTCCTCT-------CCTCTCAGCCGCTGGCTCACTCGCCCCGCTTTGCCCCCTGG
TTTCCGCCGCGAGCCACCGCCACCTATAAGTACGC-GCTCCCGAAACCACCCCGCTCAAATTTCTCATCGCAGACCAAAA
CCACTTCACACTCGAGCAACACCCCAAG---------AGCACCCAGGACCTCCAAGCCGGCCAAGAAACAGAGCATCCGA
GCAAAACCTCTCTGAATTCAAGGAAGAAGATGTGTCCGATCAAGAGGGAGATGAGCGGGGAGTCCGGC------TCGCCG
TGCAGCGGGGAGAGCTTCTACTCGCCCTCCACGTCGCCGGAGAACCAGCAGGCGAGGCAGGCGGCGTGGACGTCGGCGCC
GGCGAAGCGGCCGGCGGGGCGGACCAAGTTCAGGGAGACGCGGCACCCGGTGTACCGCGGCGTGCGGCGCAGGGGCAATG
CCGGGCGGTGGGTGTGCGAGGTGCGCGTGCCCGGCAGGCGCGGGAGCAGGCTCTGGCTCGGCACCTTCGACACCGCCGAG
GCCGCCGCGCGCGCCAACGACGCCGCCATGATCGCGCTCTCCGCCGGGGGCGCGGGCTGCCTCAACTTCGCCGACTCGGC
CGAGCTGCTCGCCGTGCCGGCAGCCTCCTCCTACCGCAGCCTCGACGAGGTCCGCCACGCCGTCGTGGAGGCCGTCGAGG
ACTTGCTGCGGCGCGAGGCGATCGCCGAGGACGACGCGCTCTCCGGCACCTCCTCGTCCGCGCCCTCCTCCCTCACCGAC
GACGGGTCGTCCTCCTCGCCGCTGCCCGAGGAGGACTCGCCGTTCGAGCTGGACGTGCTGAGCGACATGGGCTGGGACCT
GTACTACGCGAGCCTGGCGCAGGCGATGCTCATGGCGCCGCCTTCTTCCATGGCCGCGGCGCTCGGCGATTACGGCGAGG
T---------CGATGTGCCACTCTGGAGCTACCAGAGCTAGCAA--TAGTTCGCGCCAGTTAGAATATTTTACCTTTCTT
TTCTGTCCGTCGTCTTGGCTTCCGATCGATGCCAAAATTTTGGTGCTGCTGTAGGGTCACCGCTTGCAGTTTCTAGTAAT
GTGATGGTGCGAATTGGGGAAACAGAGCATGGCTT--------TTGACTCTCGACTTTCCACAATCAGCGATGCGCATTG
TATTGAACGACCTGAGCTTACGGCGACCGGGGAATCTTTGCGCGTCAGCTCAACTACA-TGAAAGAAAAACTGAG-AAAC
TGCTTTTGGCTTCCGTCCAGAAATGCTTTAGCCTTTAGGCAATCGGCGGCGCACGTGACAATCCTTGCCCCCCACCAAAA
CTCTATGGGCCCTTGGATGGGCATCTAACGGTGTAGATCAAAATCCATCCTTAG--------------------------
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>SNPs
SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--S---------S-------
SS-----------S---------S--------SS-----------------S-S-S----S--S--S-SS-SS---SS-S
S----S--------------------------------------------------------------------------
--------------------------------SS----------------------------------------------
--------S-----S------------------S---------S------------------------------------
--------------------SSSSSSSSSSSSSSSSSSSSSS--------------------------------------
-----SSS---S---------------------SSSS-------------------------------------------
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------------------------------S-------------------S-SS-S---S-SSSSSS-SSSSS-SS-S--
---------------------------------------S----------------S---S-------------------
--------------------------------SSSSSSS----------------------------------------S
S-S-----------------------------------------------------------------------------
---------------S-------------------------------------------------S-----------SS-
---------------------------------------------S----------------------------------
-------------------------------------S------S----------S------------------------
---------------------------------------------------S----------------------------
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-----------------------------------------------------------------------------S--
------------------------------S-------------------------------------------------
----S--------S--------------------------------------S---------------------------
-----------------S----SS-----------------------------S--S-----------------------
------------------------------S-------------------------------------------------
------------------------------------------S-------------------------------------
-------------------------------------S--------S---------------------------------
-----------------------------------SSSSSSSS--------------------------------S----
-----------SSSSSSSSS--------------------S--S------------SSS-----S------SSS-S----
---S-S------SS---S-----------S--------------------------------------------------
S---S--S---S---------S--S-S---------------S------S----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_517
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-----------------GGAATCGTACCACACTGGCA-------------------------------------------
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>reverse_2175
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--------------CTGAGCACCGGGGAATCTTT----------------------------------------------
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