>input_sequence_71024
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---------------------------------------------------------------ATGGAGCAGCTGCAGCA
CCAGCAGGAGCGGGCGCGGGAGGTGTACAGGGAGTGCCTGCGCAACCACGCGGCGAAGCTGGGCACCTACGCCTCCGACG
GCTGCTGCGAGTACACCCCCGACGACAGCCAGCCGGCCGCGCTCCTCTGCGCCGCCTGCGGCTGCCACCGCAACTTCCAC
CGCAAGGCATTCCTCGACGGCGCGGCCTCTCCCGGCGCCGCCAGCCAGCACGCGCCGCTAATGCTGCCCTCTCCCGGCGC
CCCGCCGGGCTACATGCACCACCACCTGGCAATGGCCGGGCCCTCCGGGCCTGGGGTCGCCATGGGCGGCGGCGACGGCG
GCGG------------GTCGCACAGCGGCGGGGGCAGCAGGCGCCGGACGCGGACCAAGTTCACGGACGAGCAGAAGGCG
CGGATGCTGCGGTTCGCGGAGCGGCTCGGGTGGCGGATGCCCAAGCGCGAGCCCGGCCGCGCGCCCGGGGACGACGAGGT
CGCGCGCTTCTGCCGGGAGATCGGGGTCACCAGGCAGGTGTTCAAGGTCTGGATGCACAACCACAAGGCCGGCGTCGGCG
GCAGCGGGGGCGCCGGAGCCCAGACGTCGTCGTCGACCACGCGTGGCGGTGGAGGTGGAGGTGG------AGGTGCGGGG
GGCATGTCGCCGGCGATGGGTGGCGACGGTGAGGACGACGAGGAGGTGAGGGGCAGCGAGATGTGCATGTAG--------
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>chr4B_1_TraesCS4B01G050800
TCTTAATCGCATAAAATGTACATGCATGCACATTAGAGTTAGTTTCCAAAGCAA-------GCGAAGTTACAATTTTAGG
GCCTCTTTGGATTGAAGGATTTTCATAGGAATATTGGAGGATTCCAATCCATTGGATTTTTTCCTAAAGAAGCCCTTTGG
ATCAAAGGAACCACACCTCCAAAATTCCTATGGATGCATTCCTACACCTCAATCCTATAAGAATTTCAACATCCACTATA
ACCTCTTTTTTACACTGATTCGCGTAGGATCGAGGCACTTTTCCTGTGTTTTTCCTATGTTCCATCCAAATGACCATTCT
TGTAGTTTTCCTCTATTTTGTAATCCTCTGTTCTGCACCTACAATCCCGTCAAATTCCTGTGTTTTTTGAATTCCTTTGT
TTTCTAATCCTGTGATCCAAAGAAGCCCTTATTGTTTATGGATCATATACACTTCTGTATGCAAAGTGCATGCACATCCT
AAATACGACATGGGAAGATACTC--CATGTGTGATCGTATCTTGAAAAGATTCTGGTTCAAAACATTGCACCTGCTACCC
TCCAAGGGCAGCACAGAGGAAAGTCAAACAGTGCCC-TGTCTGTCCTCCTTTTGCTTGCGGCAGCGAGAAGCAGTCCCCC
CTACGCCCCAAAACACCAGGATGACAAAAAATATCGCAAGAATCAAGAACAACACACGGCAAATCTACCATCTCGACGTG
CACCGAACTGCCGAGCCACAAACCCGGTTCC--CACATCTCCACATGCATTATGCTTGAGTACCAGCAGTACTTCTTCC-
--ACATACCCAGCACAAACTTACAGCTCCTCTCAAGCTCCCACGTAGCATGCACAGCTGCTGCTGAACGGGCCACATAGT
AGAAGTAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGGTGGGAGGGAGAAGGAGAGGAATAGTGAGAGAGGAG
CGA-AGGGAAAGAGGAAG----AAGAAGGCAAGAAAGAGGGAGGGAGGGAC---AAGAGAGCAATGGAGCAGCTGCAGCA
CCAGCAGGAGCGGGCGCGGGAGGTGTACAGGGAGTGCCTGCGCAACCACGCGGCGAAGCTGGGCACCTACGCCTCCGACG
GCTGCTGCGAGTACACCCCCGACGACAGCCAGCCGGCCGCGCTCCTCTGCGCCGCCTGCGGCTGCCACCGCAACTTCCAC
CGCAAGGCATTCCTCGACGGCGCGGCCTCTCCCGGCGCCGCCAGCCAGCACGCGCCGCTAATGCTGCCCTCTCCCGGCGC
CCCGCCGGGCTACATGCACCACCACCTGGCAATGGCCGGGCCCTCCGGGCCTGGGGTCGCCATGGGCGGCGGCGACGGCG
GCGG------------GTCGCACAGCGGCGGGGGCAGCAGGCGCCGGACGCGGACCAAGTTCACGGACGAGCAGAAGGCG
CGGATGCTGCGGTTCGCGGAGCGGCTCGGGTGGCGGATGCCCAAGCGCGAGCCCGGCCGCGCGCCCGGGGACGACGAGGT
CGCGCGCTTCTGCCGGGAGATCGGGGTCACCAGGCAGGTGTTCAAGGTCTGGATGCACAACCACAAGGCCGGCGTCGGCG
GCAGCGGGGGCGCCGGAGCCCAGACGTCGTCGTCGACCACGCGTGGCGGTGGAGGTGGAGGTGG------AGGTGCGGGG
GGCATGTCGCCGGCGATGGGTGGCGACGGTGAGGACGACGAGGAGGTGAGGGGCAGCGAGATGTGCATGTAGTAGT--TC
TTCCCCCTACGTGTAGTGGGAGGGATGGCATGGCTAGGCTGGGATAATTTAACTCCTTCTTTTTCGCTAATTTCTTCGGC
ATTTTTTGCTTCGA----CCGGTTGATTCTTGACG---------ATTGTGTTTAACAGTGATC----CTAATGATGCGTT
ATTTTGATGATTAATTAATTGATTTTGTTGTTACCCTCAAAGGAGGCTCGTGTCTTTACTTGT--TACT-----------
----------------ATCATGATAGCAGACTTGAAATGCATATGAAATAT-----------GA---ACTACAAATGAGC
CATGCATGCTTAATTTTCCTTTGCACTTAGTTTAACTTGATCTCGTAAGGACTCAATTAGTTCATTCATGAAAGATGGAG
AG--TACAGATAAACATGCTTGAGAAGGCTAGCTTGCTCCACTAGACTACTCTGAACGGTGGGACTCAGCAAAAAAAAAA
AATACTCTTTCCGGTCCATATTACTTGTCGCTCAACAGATGTACTTAGCATCGAAATGCCTTACATACATACATTTGAGT
AGTTCTACAAAAAACATACATTTGAATGATGCATCAGTTTGAGCGACAAGTAATATGGATCGGAGCCCCCGCAAAAAAAA
GTTGGATCGGAGGGAGTATATGATTTTCCTTTGCTGTGGAG---TTTTTGGTTTAGAACAACTGAACTTCCAAAATTCAT
TGCTTTCCTATGTACTAATTCAGGTTTTCTTTTACCAAGAAGTCAAACATTTTGGAGACTTTTTGTGCTTCTTAGCGGTG
CAATGAAACAACTTTATTGCCTTAGTC----CGGTCCAAGATAGGAAGTACTGAGTCATGTCATTTTATTCCTGTCTTCC
AAAGAGGCTGAGGGTTCATTATGTTTTAGTCCTTTCTGATGAGCCAATATATTCCACACAGCCTGATTTGTGCTGCAT-A
AAGAGTGCAGTGTAATCTTTCAAACAGCCAGGGATATCACTTCCTGAATATAATTTCAAGACAGCCACATGGTCCTCTTT
TGGTCTCCTATCGCATTTGATTGA
>chrUn_1
TCTCAATCGCATA-AATGTACATGCATGCACATTAGAGTTAGTTTTCAAAACAATGCATTTGCGAAGTTACATTT-----
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----------------------------TTATTGTTTATGGATGATATACACTTCTGTATGCAAAGTACGTGCACATCCT
AAATACGACATGGGAAGATATACTACATGTGTGATCGTATCTTGAAAAGATTCTGGCTCAAAACATTGCACCTGCTACCC
TCCAAGGGCAGCACAGAGGAAAGTCAAACAGTGCCCCTGTCTGTCCTCCATTTGCTTGCGGCAGCGAGAAGCAGTCCCCC
CTACA-CCCAAAATGCCAGGATCACAAAATATATTGCAAGAATCAAGAACAACACACGGCAAATCTACCATCTCGACGTG
CACCGAACTGCCGAGCCACAACCACAGTTCC--CACATCTCCACATGCATTATTCTTGAGTACCAGCAGTACTTCTTCCA
CTACATACCCAGCACAAACTTACAGCTCCTCTCAAGCTCCCACGTAGCATGCACAGCTGCTGCTGAACGGGCCACATAGT
AGAAGTAGAGAGAGAGAGGT-------GGGAGGGAGAGAGAGAGGTGGGAGGGAGAGAGAGAGGG--AGGGAGAGAGGAG
GGAGAGGGAAAGAAGAAGAAGAAAGAAGGCAAGAAAGAGGGAGGGAGGGAGGAGAAGAGAGCAATGGAGCAGCTGCAGCA
CCAGCAGGAGCGGGCGAGGGAGGTGTACAGGGAGTGCCTGCGCAACCACGCGGCGAAGCTGGGCACCTACGCCTCCGATG
GCTGCTGCGAGTACACCCCCGACGACAGCCAGCCCGCCGCGCTCCTCTGCGCCGCCTGCGGCTGCCACCGCAACTTCCAC
CGCAAGGCATTCCTCGACGGCGCGGCCTCTCCCGGCGCCGCCAGCCAGCACGCGCCGCTAATGCTGCCCTCTCCCGGCGC
CCCGCCGGGCTACATGCACCACCACCTGGCAATGGCCGGCCCCTCC------GGGGTCGCCATGGGCGGCGGCGACGGCG
GCGGCGACGGCGGCGGGTCGCACAGCGGCGGGGGCAGCAGGCGGCGGACGCGGACCAAGTTCACGGACGAGCAGAAGGCG
CGGATGCTGCGCTTCGCCGAGCGGCTGGGGTGGCGGATGCCCAAGCGCGAGCCCGGCCGCGCGCCCGGGGACGACGAGGT
CGCGCGCTTCTGCCGGGAGATCGGGGTCACCAGGCAGGTCTTCAAGGTCTGGATGCACAACCACAAGGCCGGTGTCGGCG
GCAGCGGGGGCGCCGGCGCCCAGACGTCGTCATCGACCACGCGCGGCGGC------GGAGGTGG------AGGCGCGGGG
GGCATGTCGCCGGCGATGGGTGGCGACGGTGAGGACGACGAGGAGGTGAGGGGCAGCGAGATGTGCATGTAGTAGT--TC
TTCCTCCTACGTGTAGTGGGAGGGATGGCATGGCTAGGCTGGGATAATTTAACTCCTTCTTTTTCGCTAATTTCTTCGCC
ATTTTTTGCTTCGT----CCGGTTGATTCTTGACG---------ATTGTGTTTAACAGTGATC----CTAATGATGCGTT
ATTTTGATGATTAATTAATTGATTTTGTTGTTACCCTCAAAGGAGGCTCGTGTCTTTACTTGT--TACTTGATTGTCCAC
TTTAATTACCATATCTATCATGATAGCTGACTTGAAATTGTCCACTTTACCATATCCATCTAGA---AGTACAAATGAGC
AATGCATACTTAATTTTCATTTGCACTTAGTTTAACTTGATCTTGCAAGGCCTCATTGA-TTTATTCATGAAAGATGGAG
AGAGTACAGATAAAATGGCCTGTGAAGGCTAGCTTGCTCCACTAGACTCCTCTGAATGGAGGGACTCGCAAAAAAAT---
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---------------GTATATGATTTTCCTTTCCTGTGGAGAGATATTTGGTTCAGAACAGCTGAACTTCCAAAATTCAT
TACTTTCCTACGTGCTAATTTAGATTTTATTTTACCAAGAGGTTGAACATTCTGGAGAATTTTTGTGCTTCTTAGCGGTG
CAATGAAACAACTTTAGTGCCTTTTTTTTCTCGGTCCACGATAGGAAGTACTAAGTCATGGCATTTTATTCCTGTGTTCC
AAACAGGCTGAGGGTTCATTACGTTTAAATCCATTATGATGAGCCAATATATTCCAAACAGCCTGATTTGTGCTGCATAA
ATGAGTGCAATGTAATATTTCAAACAGATAGGGATACCACTTCTTGAATATATTTTCCAGACAACCACATGGTCCTCTTT
CGGTTTCCTATCGCATTTG-----
>chr4A_458
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----------------------------------------------------------------AGTACATGCACATCCT
AAATACGACATGGGAAGATACTC--CATGTGTAATCGTATCTTGAAAAGATTCTGGCTCAAAACATTGCACCTGCTACCC
TCCAAGGGCAGCACAGAGGAAAGTCAAACAGTGCCC-TGTCTGTCCTCCTTT-GCTTGCGGCAGCAAGAAGCAGTA-CCC
CTACA-CCCAAAACGCCAGGATCACAAAATATATTGCAAGAATCAAGAACAACACGCGGCAAATCTACCATCTCGACGTG
CACCGAACTGCCGAGCCACCACAACAAGCTTTGCACATCTCCACAT----TATGCTTGAGTACCAGCAGTACTTCTTCCA
CTACATACCCGGCACAAACTTACAGCTCCTCTCAAGCTCCCACGTAGCATGCACAGCTGCTGCTGAACGGGCCACATAGT
AGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGCAA------------------------------
----AGGGGAAGAGGAAG----AAGAAGGCAAGAAAGAGGGAGGGAGGGAG---AAGAGAGCAATGGAGCAGCTGCAGCA
CCAGCAGGAGCGGGCGCGAGAGGTGTACAGGGAGTGCCTGCGCAACCACGCGGCGAAGCTGGGCACCTACGCCTCCGACG
GCTGCTGCGAGTACACCCCCGACGACAGCCAGCCCGCCGCGCTCCTCTGCGCCGCCTGCGGCTGCCACCGCAACTTCCAC
CGGAAGGCGTTCCTCGACGGCACGGCCTCTCCCGGCGCCGCCAGCCAGCACGCGCCGCTAATGCTGCCCTCTCCCGGCGC
CCCGCCGGGCTACATGCACCACCACCTGGCAATGGCCGGCCCCTCTGGGCCTGGGGTCGCCATGGGCGGCGGCGACGGCG
GCGG------------GTCGCACAGCGGCGGGGGCAGCAGGCGGCGGACGCGGACCAAGTTCACCGACGAGCAGAAGGCG
CGGATGCTGCGGTTCGCGGAGCGGCTGGGGTGGCGGATGCCCAAGCGCGAGCCCGGCCGCGCGCCCGGGGACGACGAGGT
CGCGCGCTTCTGCCGGGAGATCGGGGTCACCAGGCAGGTCTTCAAGGTCTGGATGCACAACCACAAGGCCGGTGTCGGCG
GCAGCGGGGGCGCCGGCGCCCAGACGTCGTCGTCGACCACGCGTGGCGGC------GGAGGTGGAGGTGGAGGCGCGGGG
GGCATGTCGCCGGCGATGGGTGGCGACGGTGAGGACGACGAGGAGGTGAGAGGCAGCGAGATGTGCATGTAGCAGTTCTC
TTCTTCCTACGTGTAGT----GGGATGGCATGGCTAGGCTGGGATAATTTAACTCGTTCTTCTTCGCTGATTTCTTCGGC
ATTTTTTGCTTCGATCGGCCGGTTGATTCTTGACGTTGAGATTAATTGTGTTTAACAGTGATCGATCCTAATGATGTGTT
ATTTTGGTAATTAATCAATTGATTTTGTTGTTACCCTCAAAGGAGGCTCGTGTCTTTACTTGGTATACTTGATTGTCCAC
TTGAA-------------------------------ATGCATATGGGCTAT-----------GAACTAGTACAAATGAGC
CATGCATGCTTAATTTCCCTTTGCACTTAGTTTAGCTTGATCTGGCAAGGACTCATTGAGTTTATTCATGAAAGATGGAG
AG--TA---ATAAACTTGCTTGAGAAGGCTAGGTTGCCCCACTACACTCCTCTGAATGGCGGGACTCGCAATAAAAATAT
ACGTACTCCCTTTCGATCC-------------------------------------------------------------
----------------------------ATACATCCATTTGAGCGCCAAGTAATATGGAGCGC-----------------
----------AGGGAGTATATGATTTTCCTTTCCTATGGAG---TATTTGGTTCAGAACAATTGAACTTCCAAAATTCAT
TATTCTCCTACGTACTAATTCAGATTTTCTTTTACCAAGAGGTCAAACATCTTGTAGAATTTTTGTGCTTCTTAGCGGTG
CAATGAAACAACTTTATTGCC---TTTTTTTCGGTCCAAGATAGGAAGTACTAAGCCATGGCAATTTATTCCTGTGTTCC
AAAGACGCTGAGGGTTCATCATGTTTTAATCCATTCTGATGAGCCAACATATTCCAAACAGCCTGATTTGTGCTGCATAA
ATGAGTGCAGTGTAATCTTTCAAACAGCCAGGGTTATCACTTCTCGAATATATTTTCCAGACAGCCACATGGTCCTCTTT
TGGTCTCCTATCTCATTCGATCGA
>SNPs
---S---------S-------------------------------S----S---------------------S--SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-----------------------S------------
--------------------------------------------------------S-----------------------
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----SS--------S-------S------S----S---------------------------------------------
---------------------S-S-S------------------------------------------------------
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--------------------------------------------------------SS------SSS--S----------
S-------------------------------------------------S-----------------------------
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----------------------------------S---------------------------------------------
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---------------------------------------S----------------------------------------
-------------------------------------------S------------------------------------
--------------------------S-----------------------------------------------------
---------------------------------------S--------------------------------S-------
----------------S--------------------------------SSSSSSS-----------------S------
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----S---------------------------------------------------------------------------
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---------------------------S-----------------SSS--------------------S-----------
-------------------------------------------S-S---------S-S----S-----------------
---------------S--------------------------------S-------S--S-------SSS-------S-S
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----SS--------S-------------S--SSSSSSSSSSSSSSSSSS
SSSSSSSSSS----------------------S------------S-------S--------------------------
-S--------S------------S----------------S-----------------S---------------------
-----------------------SS-S-------------------------S-------S--------------S----
----------------------------S---S-----------------------S-----------------------
-S-----------------------------------------S--------S----S----------------------
---------------------S--
>forward_1011
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-------------------------------AGAAAGAGGGAGGGAGGGAC-----------------------------
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>reverse_2778
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---------------------------------------------------------AAGACAGCCACATGGTCCTC---
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