>input_sequence_71022
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---------------ATGGAGCAGCTGCAGCACCAGCAGGAGCGGGCGCGAGAGGTGTACAGGGAGTGCCTGCGCAACCA
CGCGGCGAAGCTGGGCACCTACGCCTCCGACGGCTGCTGCGAGTACACCCCCGACGACAGCCAGCCCGCCGCGCTCCTCT
GCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGGAAGGCGTTCCTCGACGGCACGGCCTCTCCCGGCGCCGCCAGCCAG
CACGCGCCGCTAATGCTGCCCTCTCCCGGCGCCCCGCCGGGCTACATGCACCACCACCTGGCAATGGCCGGCCCCTCTGG
GCCTGGGGTCGCCATGGGCGGCGGCGACGGCGGCGG------------GTCGCACAGCGGCGGGGGCAGCAGGCGGCGGA
CGCGGACCAAGTTCACCGACGAGCAGAAGGCGCGGATGCTGCGGTTCGCGGAGCGGCTGGGGTGGCGGATGCCCAAGCGC
GAGCCCGGCCGCGCGCCCGGGGACGACGAGGTCGCGCGCTTCTGCCGGGAGATCGGGGTCACCAGGCAGGTCTTCAAGGT
CTGGATGCACAACCACAAGGCCGGTGTCGGCGGCAGCGGGGGCGCCGGCGCCCAGACGTCGTCGTCGACCACGCGTGGCG
GCGGAGGTGGAGGTGGAGGCGCGGGGGGCATGTCGCCGGCGATGGGTGGCGACGGTGAGGACGACGAGGAGGTGAGAGGC
AGCGAGATGTGCATGTAG--------------------------------------------------------------
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>chr4A_1_TraesCS4A01G264100
TTGAAGAATCGTGAAGGAATTGGAGATCACAAAAAATTCTGCTAACAATTATTTAACATATCCAATCATATGATAGAATC
GGGCGATCTGTTGTGTCTGCTGAATCGCGCTAGCGCAAGAGATTCAAGAAATGTACTTAGTCAGCTTATATATGCACATT
ACAGTTAGTTTTCAACACAATGCATTCGTGAAGTTACATTTGTTTATGTATCATGCTTTTGTGTATACAAAGTACTCCCT
CCGGTCCTTTTTAGTTCGCATATAAGATTTATCTGAAGTCAAGCCTCGTAAAGTTTGATCAATTTTATAGAAAAAAATAC
CAACATTCATAATGTGAAATCAATATCATCAGTAGATGCGGCATGAATTAAATTTTCACATTATATAACTTTAGCATGGT
AGATGTTGATATTTTTCCATACAAATATGGTCAAACTTTATGAAGATTGACTTTAGACAATTCTTATATGCAGAGTAAAA
AGGATCAAAGGGAGT-----------------------------------------------------------------
----------------ACATGCACATCCTAAATACGACATGGGAAGATACTC--CATGTGTAATCGTATCTTGAAAAGAT
TCTGGCTCAAAACATTGCACCTGCTACCCTCCAAGGGCAGCACAGAGGAAAGTCAAACAGTGCCC-TGTCTGTCCTCCTT
T-GCTTGCGGCAGCAAGAAGCAGTA-CCCCTACA-CCCAAAACGCCAGGATCACAAAATATATTGCAAGAATCAAGAACA
ACACGCGGCAAATCTACCATCTCGACGTGCACCGAACTGCCGAGCCACCACAACAAGCTTTGCACATCTCCA----CATT
ATGCTTGAGTACCAGCAGTACTTCTTCC---ACTACATACCCGGCACAAACTTACAGCTCCTCTCAAGCTCCCACGTAGC
ATGCACAGCTGCTGCTGAACGGGCCACATAGTAGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGC
AA----------------------------------AGGGGAAGAGGAAG----AAGAAGGCAAGAAAGAGGGAGGGAGG
GAG---AAGAGAGCAATGGAGCAGCTGCAGCACCAGCAGGAGCGGGCGCGAGAGGTGTACAGGGAGTGCCTGCGCAACCA
CGCGGCGAAGCTGGGCACCTACGCCTCCGACGGCTGCTGCGAGTACACCCCCGACGACAGCCAGCCCGCCGCGCTCCTCT
GCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGGAAGGCGTTCCTCGACGGCACGGCCTCTCCCGGCGCCGCCAGCCAG
CACGCGCCGCTAATGCTGCCCTCTCCCGGCGCCCCGCCGGGCTACATGCACCACCACCTGGCAATGGCCGGCCCCTCTGG
GCCTGGGGTCGCCATGGGCGGCGGCGACGGCGGCGG------------GTCGCACAGCGGCGGGGGCAGCAGGCGGCGGA
CGCGGACCAAGTTCACCGACGAGCAGAAGGCGCGGATGCTGCGGTTCGCGGAGCGGCTGGGGTGGCGGATGCCCAAGCGC
GAGCCCGGCCGCGCGCCCGGGGACGACGAGGTCGCGCGCTTCTGCCGGGAGATCGGGGTCACCAGGCAGGTCTTCAAGGT
CTGGATGCACAACCACAAGGCCGGTGTCGGCGGCAGCGGGGGCGCCGGCGCCCAGACGTCGTCGTCGACCACGCGTGGCG
GCGGAGGTGGAGGTGGAGGCGCGGGGGGCATGTCGCCGGCGATGGGTGGCGACGGTGAGGACGACGAGGAGGTGAGAGGC
AGCGAGATGTGCATGTAGCAGTTCTCTTCTTCCTACGTGTAGT----GGGATGGCATGGCTAGGCTGGGATAATTTAACT
CGTTCTTCTTCGCTGATTTCTTCGGCATTTTTTGCTTCGATCGGCCGGTTGATTCTTGACGTTGAGATTAATTGTGTTTA
ACAGTGATCGATCCTAATGATGTGTTATTTTGGTAATTAATCAATTGATTTTGTTGTTACCCTCAAAGGAGGCTCGTGTC
TTTACTTGGTATACTTGATTGTCCACTTGAA-------------------------------ATGCATATGGGCTAT---
--------GAACTAGTACAAATGAGCCATGCATGCTTAATTTCCCTTTGCACTTAGTTTAGCTTGATCTGGCAAGGACTC
ATTGAGTTTATTCATGAAAGATGGAGAG--TA---ATAAACTTGCTTGAGAAGGCTAGGTTGCCCCACTACACTCCTCTG
AATGGCGGGACTCGCAATAAAAATATACGTACTCCCTTTCGATCC-----------------------------------
------------------------------------------------------ATACATCCATTTGAGCGCCAAGTAAT
ATGGAGCGC---------------------------AGGGAGTATATGATTTTCCTTTCCTATGGAG---TATTTGGTTC
AGAACAATTGAACTTCCAAAATTCATTATTCTCCTACGTACTAATTCAGATTTTCTTTTACCAAGAGGTCAAACATCTTG
TAGAATTTTTGTGCTTCTTAGCGGTGCAATGAAACAACTTTATTGCC---TTTTTTTCGGTCCAAGATAGGAAGTACTAA
GCCATGGCAATTTATTCCTGTGTTCCAAAGACGCTGAGGGTTCATCATGTTTTAATCCATTCTGATGAGCCAACATATTC
CAAACAGCCTGATTTGTGCTGCATAAATGAGTGCAGTGTAATCTTTCAAACAGCCAGGGTTATCACTTCTCGAATATATT
TTCCAGACAGCCACATGGTCCTCTTTTGGTCTCCTATCTCATTCGATCGATAATATGCGGCACCTGCAATTTTTACTTAT
ATAGGTATCGCATACTAT-------------------------TGATCATAGTTTATGCATTTCTACTTGTAGTTTTGCA
TTAATAAAAATTAGTT---
>chr3A_230
AAGATA--------------------------------------------------------------------------
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--------------------------------------------------------------------------CTCCCT
CCCGTCCTTTTTAGTTCGCATATAAGATTTATCTAAAGTCAAGCCTCGTAAAGTTTGACCAACTTTATAGAAAAAAATAC
CAACATTCACAATGTGAAATCAGT---ATCAGTAGATGCGGCATGACTTAAGTTTTCATATTATATAACTTTAGCATGGT
AGATGTTGATATTTTTTCATACAAATATGGTCAAACTTTATGAAGTTTGACTTCAGACAATTCTTATATGCAGAGTAAAA
AGGTTATACTCCCTCCCGTCCTTTTTAGTTCGCATATAAGATTTATCTAAAGTCAAGCCTCGTAAAGTTTGACCAACTTT
ATAGAAAAAAATACCAACATTCACAATGTGAAATCAGTATCAGTAGATGCGG--CATGACTTAAGT--------------
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---------------------------------------------------------------------TTTCATATTAT
ATAACTTTAGCATGGTAGATGTTGATATTTTTTCATACAAATATGGTCAAACTTTATGAAGTTTGACTTCAGACAATTCT
TATATGCAGAGTAAAAAGG
>chr4B_493
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------------AGT-----------------------------------------------------------------
----------------GCATGCACATCCTAAATACGACATGGGAAGATACTC--CATGTGTGATCGTATCTTGAAAAGAT
TCTGGTTCAAAACATTGCACCTGCTACCCTCCAAGGGCAGCACAGAGGAAAGTCAAACAGTGCCC-TGTCTGTCCTCCTT
TTGCTTGCGGCAGCGAGAAGCAGTCCCCCCTACGCCCCAAAACACCAGGATGACAAAAAATATCGCAAGAATCAAGAACA
ACACACGGCAAATCTACCATCTCGACGTGCACCGAACTGCCGAGCCACAAACCCGGTTCC--CACATCTCCACATGCATT
ATGCTTGAGTACCAGCAGTACTTCTTCC---AC---ATACCCAGCACAAACTTACAGCTCCTCTCAAGCTCCCACGTAGC
ATGCACAGCTGCTGCTGAACGGGCCACATAGTAGAAGTAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGGTGG
GAGGGAGAAGGAGAGGAATAGTGAGAGAGGAGCGA-AGGGAAAGAGGAAG----AAGAAGGCAAGAAAGAGGGAGGGAGG
GAC---AAGAGAGCAATGGAGCAGCTGCAGCACCAGCAGGAGCGGGCGCGGGAGGTGTACAGGGAGTGCCTGCGCAACCA
CGCGGCGAAGCTGGGCACCTACGCCTCCGACGGCTGCTGCGAGTACACCCCCGACGACAGCCAGCCGGCCGCGCTCCTCT
GCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGCATTCCTCGACGGCGCGGCCTCTCCCGGCGCCGCCAGCCAG
CACGCGCCGCTAATGCTGCCCTCTCCCGGCGCCCCGCCGGGCTACATGCACCACCACCTGGCAATGGCCGGGCCCTCCGG
GCCTGGGGTCGCCATGGGCGGCGGCGACGGCGGCGG------------GTCGCACAGCGGCGGGGGCAGCAGGCGCCGGA
CGCGGACCAAGTTCACGGACGAGCAGAAGGCGCGGATGCTGCGGTTCGCGGAGCGGCTCGGGTGGCGGATGCCCAAGCGC
GAGCCCGGCCGCGCGCCCGGGGACGACGAGGTCGCGCGCTTCTGCCGGGAGATCGGGGTCACCAGGCAGGTGTTCAAGGT
CTGGATGCACAACCACAAGGCCGGCGTCGGCGGCAGCGGGGGCGCCGGAGCCCAGACGTCGTCGTCGACCACGCGTGGCG
GTGGAGGTGGAGGTGGAGGTGCGGGGGGCATGTCGCCGGCGATGGGTGGCGACGGTGAGGACGACGAGGAGGTGAGGGGC
AGCGAGATGTGCATGTAGTAGT--TCTTCCCCCTACGTGTAGTGGGAGGGATGGCATGGCTAGGCTGGGATAATTTAACT
CCTTCTTTTTCGCTAATTTCTTCGGCATTTTTTGCTTCGA----CCGGTTGATTCTTGACG---------ATTGTGTTTA
ACAGTGATC----CTAATGATGCGTTATTTTGATGATTAATTAATTGATTTTGTTGTTACCCTCAAAGGAGGCTCGTGTC
TTTACTTGT--TACT---------------------------ATCATGATAGCAGACTTGAAATGCATATGAAATAT---
--------GA---ACTACAAATGAGCCATGCATGCTTAATTTTCCTTTGCACTTAGTTTAACTTGATCTCGTAAGGACTC
AATTAGTTCATTCATGAAAGATGGAGAG--TACAGATAAACATGCTTGAGAAGGCTAGCTTGCTCCACTAGACTACTCTG
AACGGTGGGACTCAGCAAAAAAAAAAAATACTCTTTCCGGTCCATATTACTTGTCGCTCAACAGATGTACTTAGCATCGA
AATGCCTTACATACATACATTTGAGTAGTTCTACAAAAAACATACATTTGAATGATGCATCAGTTTGAGCGACAAGTAAT
ATGGATCGGAGCCCCCGCAAAAAAAAGTTGGATCGGAGGGAGTATATGATTTTCCTTTGCTGTGGAG---TTTTTGGTTT
AGAACAACTGAACTTCCAAAATTCATTGCTTTCCTATGTACTAATTCAGGTTTTCTTTTACCAAGAAGTCAAACATTTTG
GAGACTTTTTGTGCTTCTTAGCGGTGCAATGAAACAACTTTATTGCCTTAGTC----CGGTCCAAGATAGGAAGTACTGA
GTCATGTCATTTTATTCCTGTCTTCCAAAGAGGCTGAGGGTTCATTATGTTTTAGTCCTTTCTGATGAGCCAATATATTC
CACACAGCCTGATTTGTGCTGCATAAA-GAGTGCAGTGTAATCTTTCAAACAGCCAGGGATATCACTTCCTGAATATAAT
TTCAAGACAGCCACATGGTCCTCTTTTGGTCTCCTATCGCATTTGATTGATAA---------------------------
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>chrUn_493
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------------AGT-----------------------------------------------------------------
----------------ACGTGCACATCCTAAATACGACATGGGAAGATATACTACATGTGTGATCGTATCTTGAAAAGAT
TCTGGCTCAAAACATTGCACCTGCTACCCTCCAAGGGCAGCACAGAGGAAAGTCAAACAGTGCCCCTGTCTGTCCTCCAT
TTGCTTGCGGCAGCGAGAAGCAGTCCCCCCTACA-CCCAAAATGCCAGGATCACAAAATATATTGCAAGAATCAAGAACA
ACACACGGCAAATCTACCATCTCGACGTGCACCGAACTGCCGAGCCACAACCACAGTTCC--CACATCTCCACATGCATT
ATTCTTGAGTACCAGCAGTACTTCTTCCACTAC---ATACCCAGCACAAACTTACAGCTCCTCTCAAGCTCCCACGTAGC
ATGCACAGCTGCTGCTGAACGGGCCACATAGTAGAAGTAGAGAGAGAGAGGT-------GGGAGGGAGAGAGAGAGGTGG
GAGGGAGAGAGAGAGGG--AGGGAGAGAGGAGGGAGAGGGAAAGAAGAAGAAGAAAGAAGGCAAGAAAGAGGGAGGGAGG
GAGGAGAAGAGAGCAATGGAGCAGCTGCAGCACCAGCAGGAGCGGGCGAGGGAGGTGTACAGGGAGTGCCTGCGCAACCA
CGCGGCGAAGCTGGGCACCTACGCCTCCGATGGCTGCTGCGAGTACACCCCCGACGACAGCCAGCCCGCCGCGCTCCTCT
GCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGCATTCCTCGACGGCGCGGCCTCTCCCGGCGCCGCCAGCCAG
CACGCGCCGCTAATGCTGCCCTCTCCCGGCGCCCCGCCGGGCTACATGCACCACCACCTGGCAATGGCCGGCCCCTCC--
----GGGGTCGCCATGGGCGGCGGCGACGGCGGCGGCGACGGCGGCGGGTCGCACAGCGGCGGGGGCAGCAGGCGGCGGA
CGCGGACCAAGTTCACGGACGAGCAGAAGGCGCGGATGCTGCGCTTCGCCGAGCGGCTGGGGTGGCGGATGCCCAAGCGC
GAGCCCGGCCGCGCGCCCGGGGACGACGAGGTCGCGCGCTTCTGCCGGGAGATCGGGGTCACCAGGCAGGTCTTCAAGGT
CTGGATGCACAACCACAAGGCCGGTGTCGGCGGCAGCGGGGGCGCCGGCGCCCAGACGTCGTCATCGACCACGCGCGGCG
GC------GGAGGTGGAGGCGCGGGGGGCATGTCGCCGGCGATGGGTGGCGACGGTGAGGACGACGAGGAGGTGAGGGGC
AGCGAGATGTGCATGTAGTAGT--TCTTCCTCCTACGTGTAGTGGGAGGGATGGCATGGCTAGGCTGGGATAATTTAACT
CCTTCTTTTTCGCTAATTTCTTCGCCATTTTTTGCTTCGT----CCGGTTGATTCTTGACG---------ATTGTGTTTA
ACAGTGATC----CTAATGATGCGTTATTTTGATGATTAATTAATTGATTTTGTTGTTACCCTCAAAGGAGGCTCGTGTC
TTTACTTGT--TACTTGATTGTCCACTTTAATTACCATATCTATCATGATAGCTGACTTGAAATTGTCCACTTTACCATA
TCCATCTAGA---AGTACAAATGAGCAATGCATACTTAATTTTCATTTGCACTTAGTTTAACTTGATCTTGCAAGGCCTC
ATTGA-TTTATTCATGAAAGATGGAGAGAGTACAGATAAAATGGCCTGTGAAGGCTAGCTTGCTCCACTAGACTCCTCTG
AATGGAGGGACTCGCAAAAAAAT---------------------------------------------------------
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-----------------------------------------GTATATGATTTTCCTTTCCTGTGGAGAGATATTTGGTTC
AGAACAGCTGAACTTCCAAAATTCATTACTTTCCTACGTGCTAATTTAGATTTTATTTTACCAAGAGGTTGAACATTCTG
GAGAATTTTTGTGCTTCTTAGCGGTGCAATGAAACAACTTTAGTGCCTTTTTTTTCTCGGTCCACGATAGGAAGTACTAA
GTCATGGCATTTTATTCCTGTGTTCCAAACAGGCTGAGGGTTCATTACGTTTAAATCCATTATGATGAGCCAATATATTC
CAAACAGCCTGATTTGTGCTGCATAAATGAGTGCAATGTAATATTTCAAACAGATAGGGATACCACTTCTTGAATATATT
TTCCAGACAACCACATGGTCCTCTTTCGGTTTCCTATCGCATTTGGTCGATAGTATGTGATATCTGCAATTTTTACTTAT
AGATATCGCATATA-TAT-------------------------CGCTCAGAGTTTATACATTTTCACTTGTAGCTTTGCA
TTAATAAAGATTAGTT---
>SNPs
SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--S-------------------------------S-----------------------S---S-----------------
---------S------------S-SSS-------------------S----S------S---------------------
----------------S----------------------------S-------S--------------------------
---S-SS-SSSS--------------------------------------------------------------------
-------------------------------------------------------------S------------------
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--------------S---------S-------------------------------------------------------
----S-------------------------------------------S--S---SSSSSSS------------------
---------------------------------SSS------S-------------------------------------
-------------------------------------S--------------------------S------------S-S
S---------------------------------------S---------------------------------------
--------------------------------------------------S-----------------------------
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----------------------------------S-----S------------S--------------------------
-----------------------------------------------------------------------------S--
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----------------S---------------------------------------------------------------
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----------------------------------------------------------------------------S---
------------------S---SS-----S--------------------------------------------------
-S-----S------S-------------------------SSSS-----------------SSSSSSSSS----------
---------SSSS---------S---------S-S------S--------------------------------------
--------SSS-----------------S------------------------------------------SSS------
----------SSS-----------------------------S-----------------S--------S----------
----------------------------------------------------------S----S------S---------
-----S-----------S-----S-S-SSSSSSSSSSSSSSSSSS-----------------------------------
--------------------------------------------------------S----SS--------S--------
-----S--S----------------------------------------------------S------------------
-------S--------------------S-S---------------------------------------------S---
S------------------------------------------------------S------------------------
-S-------S---------------------S-------------S---------------------------S------
-----------------------------------------------------------S----------S---------
--------------------------------------S----S-------------S-SS-S-----------------
---SS-S-------S------------------------------S---S-------------SS--------S------
--------S----------
>forward_96
----------------------------------------------------------------------------AATC
GGGCGATCTGTTGTGT----------------------------------------------------------------
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>reverse_1961
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----------------------------------------TCGGCCGGTTGATTCTTGAC--------------------
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