>input_sequence_71014
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----------------------------------------------------------------ATGGCCGCCAGAAGGC
ACGCCGGGAGCAGCTCCGGTTCCACTTCGGCGAACCTAAGCATGAAGCTGCTGGTGGAGGTGGACAGACGCGGCACGCCC
AGGCGCGTGGTGTACGCCGAGGCTGGCAAGGACGTCGTCGACTTCCTCCTCACCTTCCTCACCTTGCCGATCGGCACGGT
CGTCAAGCTGCTCCGGAGGAACTCCATGCCCATGGTAGGCTGCGTCGGCAACCTGTACGGCAGCGTCGAGAAGCTCCCCG
ACGACTTCATCTGCCACAGGGACGCTAGGGCCGCCAAGGACACGCTGCTCAGGCCCGCCGGCGGCAGGCTTCCCCTGCTC
ACCAACGCGGGGTC------GTCCAGCACCGGCGGCTTTGTGAGGGCGGGCGTGACCTACACGGTCATGGACGACCTCGA
GGTTGCTCCCAGGTCTAACGTCGATTTCATCACCAGCCTCAACAAATATGGTATCAGGGACATCAGCTGTCTCCACGGGA
AGGATGTCCAAGTTGGCCACACCGAGGTAATTCACGAAGAAACT----ATACTCTTTTTTTT---------AAGTTGAAC
TAATTTGATGGAGGTGAATTATTGGATGTGGTTTGTGGGTTTGCAGGGTCTCCAGATACTGAGGGCGTCACTCAAGTCGA
AGACGGTCCTCACCGACGTCTTCCTTCGGACGAACACTCCGAGTCCGAGTCCGAGGGCCTTAACCGCAGGGTGA------
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>chr3D_1_TraesCS3D01G131500
CCGCACCCCCTTCCTCATGGATCCGGCTCTGGGGAAACCCCAGATCATGTGCGACGGGGCGATAGCGATGCCTTGGCGTT
TGATGAGCCACAAGTATAAATGATTAATTGTAGGCTTTTCGATAAGTAAGAGTGTCCAATCCAATGAGGAGCAGAAAAAA
TTGATACGCGGTTTTCCGCAAGGTTTTCTCTGCAAATGTTGTAAAATAGTTTGGGTAGGTAGTGTGATAGCAAGATAATT
GATGACAAGTAGCAAGTAAAGACATTTCCAACGTTGGCCCGTAAATTGGCTTCGACATCCATCAGTAGGCATTGGCAGGA
CCAGTCCGCGGACACTGAAGTGGGCGTATAGGGCACCGAATTAGCTTATCTGTGGTTGTAGATGCTCTTATACCTCAATC
TCTCCTCTCACACTCTCTTTACCTGACAAAAGCTGGAACTTAGTGTGCCATGTCGTGCACGTATTGCTGTGTGTTCATTT
GACAAATTAATTGTCATCTTGAGGTTGAGAGGAACGACAGATTCTTGCACAGCCAAGCGGCACTGAT-------------
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-GAGCTCTGCACTGCGCATGCTGGTGGTTGTGCCGGCGCCGGCGAGGGAGCCGTGCGATGCCTGCGAGGAAAAAACGCCC
GGCGCCCGCTTTGGCTCGCGTTTCTTCCTTGTGCACGATCGGGACCTGCAACGACTCGACGCGTGATGTAACATCGGA--
-AGGCCACGCGAAGCTTCTCCAAAAGCTGCCGTTTGTGTCGCTACTCGCTGCTGCCACTCTCAGTAATGACTTTGGGAGA
GGCAGGCGCCGCCCG-CGTCAAGTGGCTGATTCATCTT--CGCTGGGTGATCTACGTCCAACGGATGCACGTACCCCTAG
TCTTCTTTTCCCATTGCTCGCGCTCGCACGCCGGCGTCGCGCGAAGCCCAGTGCTCGTCTATAAGACTATAAATACACTC
TTGTCTAAGCTCAATTCGTACTGGATC----CCCCCGGCAGACCACCTGACCCGTGCGAGCGAGATGGCCGCCAGAAGGC
ACGCCGGGAGCAGCTCCGGTTCCACTTCGGCGAACCTAAGCATGAAGCTGCTGGTGGAGGTGGACAGACGCGGCACGCCC
AGGCGCGTGGTGTACGCCGAGGCTGGCAAGGACGTCGTCGACTTCCTCCTCACCTTCCTCACCTTGCCGATCGGCACGGT
CGTCAAGCTGCTCCGGAGGAACTCCATGCCCATGGTAGGCTGCGTCGGCAACCTGTACGGCAGCGTCGAGAAGCTCCCCG
ACGACTTCATCTGCCACAGGGACGCTAGGGCCGCCAAGGACACGCTGCTCAGGCCCGCCGGCGGCAGGCTTCCCCTGCTC
ACCAACGCGGGGTC------GTCCAGCACCGGCGGCTTTGTGAGGGCGGGCGTGACCTACACGGTCATGGACGACCTCGA
GGTTGCTCCCAGGTCTAACGTCGATTTCATCACCAGCCTCAACAAATATGGTATCAGGGACATCAGCTGTCTCCACGGGA
AGGATGTCCAAGTTGGCCACACCGAGGTAATTCACGAAGAAACT----ATACTCTTTTTTTT---------AAGTTGAAC
TAATTTGATGGAGGTGAATTATTGGATGTGGTTTGTGGGTTTGCAGGGTCTCCAGATACTGAGGGCGTCACTCAAGTCGA
AGACGGTCCTCACCGACGTCTTCCTTCGGACGAACACTCCGAGTCCGAGTCCGAGGGCCTTAACCGCAGGGTGAAGTGTC
CTCGCCGTGTCATCCTTGTGGTGCGTGCATGTGTGTCTTTTGGTCATATGGTTCGTGGCCTTCGGCATCCTTGACTGAAG
CTCACTTCTTGAACCCACGAAACCTGTGTTGGTCACTGGTTCACGGCTCACATACTATGAATAAAGGCAAGGAGTTATAT
CATCAGGTGTCTCTTCATTAATTAGATGATTTTT-AACAAGTCTCAATCGCACCAACTAT------CCTTCTCTCCAGGT
CACACCATATAGTAGTGCAATTAATTATAGTAC-----------------------------------------------
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--TTGGTAATAAAGGATGCCTTTGAGATTTGTTTTTGAAAGAACTAGTGACAGCAAAACGACACTCTCCGGGAACAGGAT
CCGGCCTTGTATCACATTGTATGCGATACGAATGATACTTTTACACAAGTACTCAACTCCTTTCCCGCCGGATACATCCT
TTGCGCAGCAGTTGGTCGGCCC-TTTCTTGTGTCATGACAATGTTTT--CTATCTCGTTTGGATTAAATTAACCTAACAT
AAGGACGAGATGTGTTTCGCCGGAATCTAACTGCAAACCAATTGTAACATTTATGACAATATAAGCAGTCATATGGACCT
TTCACTTGAATGTTTGATGAAATTTATGGAGGTAAAGGCATAAAACATTGCAATTGCCTAGATCAATTATAACGTATATG
GCTATTCAGCACACTTTGGAAAAAATAAAACGAAGAAAATAATTGCACATGTACTACCGTGACACCCATTCGTTTTATTT
TCCTTTGCTTTCTCTTTGTTTCCTTTTCTGTCTTCGTTGGTTTCATGTGTTTTTCTTTGTTTCCCTTTGTTGTTTTTCTT
TATTTTCCTGCGTTTTTCTTTGTTTCCTGCGTTACCGTTTTAAAAAATATTTTTCCTATACACATTTAACATTTTTCAAA
TGCTTTATTATGCTTGATTAAGATATTTTAGAGATATGATCAACTTCTTTCAAACACATTGTATATTTGAAAAAAAATGA
GGTGTGCGAACAT
>chr3A_380
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-----------------------------------------------------------AGATGCTCTTGTACCTCAGTC
TCTCCTCTCACACTCTCTTTACCCGACAAAAGCTGGAACTTAGTGTGCCATGTCATGCACGTATTGCTGTGTATTCATTT
GACAAATTAATTGTCATCTTGAGGTTGAGACGAACGACAGATTCTTGTACAGCCAAGCGGCACTGATCTGCACTAGTAAG
CAGTGCTGGCGTAGCCGCGGCGCCATGCCGCGCAGACCACACGCGTCTCGGCTCCCTTACGCACGGCACGGGACGGCACG
ATCGACGGATCGAGTATGCGTCGCGTAGCGCGTGCTTTACACGGCCACGCACGTTACGAAATAGTACGTACTAGCTAGGA
AGAGCTCTGCACTGCGCATGCTGGTGGTTGTGCCGGCGCCGGCGAGGGAGCC-----------GCGAGGAAAAAACGCCC
GGCGCCCGCTTTGGCTCGCGTTTCTTCCTTGTGCACGATCGGGACCTGCAACGACTCGACGCGTGATGTAACATCGGAAG
AAGGCCACGCGAAGCTTCTCCAAAAGCTGCCGTTTGTGTCGCTACTCGCTGCTGCCA--CTCAGTAATGACTTTGGGAGA
GGCAGGCGCCGCCCGGCGTCAAGTGGCCGATTCATCTTCGCGCTGGGTGATCTACGTCCAACGGACGCACGTACCACTAG
TCTTCTTTTCCCACATTGCTCGCA----------------------CCTAGTGCTCGTCTATAAATACACTCA-------
TTGTCTAAGCTCAATTCGTGCTAGATCACTGCCCCCGGCAGACCACCTGACCCGGCCGCTCGAGATGGCCGCCAGAAGGC
ACGCCGGGAGCAGCTCCGGTCCCACTTCGGCCAACCTAAGCATGAAGCTGCTGGTGGAGGTGGACAGGCGCGGCACGCCC
AGGCGCGTGGTGTACGCCGAGGCCGGCAAGGACGTCGTCGACTTCCTCCTCACCTTCCTCACCTTGCCGATCGGCACGGT
CGTCAAGCTGCTCAGGAGGAACTCCATGCCCATGGTAGGCTGCGTCGGCAACCTGTACGGCAGCGTCGAGGAGCTCCCCG
ACGACTTCATCTGCCACAGGGACGCCAGGGCCGCCAAGGACACCCTGCTCAGGCCCGCCGGCGGCAGGCTTCCCCTGCTC
ACGAACGCGGGGTCGTCGTCGTCCAGCACCGGCGGCTTTGTGAGGGCGGGCGTGACCTACGAGGTCATGGACGACCTCGA
GATTGCTCCCAGGTCTAACGTCGATTTCATCACCAACCTCAACAGATATGGTATCAGGGACATCGGCTGTCTCCAGAGGA
AGACTGTCCGAGTTGGCGACACCGAGGTAATTCACGAAGAAACTATCTATACTCCTTTTGTACAAGAAAAAAAGTTGAAC
TAATCTGATGGAGGTGAATTATTGGGTGTGGTTTGTGGGTTTGCAGGGTCTCCAGATACTGAGGGCGTCACTCAAGTCGA
AGACGGTCCTCACCGACGTCTTCCTTCGGACGAACACTCCGAGTCCGAGTCCGAGGGCCTTAACTGCAGGGTGAAGTGTC
CTTGCCGTGTCATCCTTGTGGTGCGTGCATGTGTTTC-TTTGGTCATATCGTTCGTG-----------------------
----------------------------TTGGTCACTGGTTCACGGCTCACATACTATGAATAAAGGCAAGGAAT--TAT
CATGAGGTGTCTCTTCATTAATTAGATGATTTTTTAACAAATCTCAATCACACCAACTATGTCTATCCTTCTCTCCGGGT
CACACCATATAGTAGTGCAATTGATTATAGTACTAGCAAGATGCTCGTATATTGCACAGAACATCAAGATGCATTTTTTT
ACAAAACATCTATTGTGACTGACCCATGCAGAAGTAATGCCATGTGTAAAAACTAATTATATCTTGAGAATTTTATTGGA
AAAATGATATCTCGACCATTTCAACAAAAAATAAAAGATGAGAGATAAGGTGAGGAGGAGTGGGGCGTGGTGATGACTGG
TGATCGGACTGGGCGGAGGTATGGGGATGGACGGCGCCGGCAGGCGGCAGCGGCCACCATGCTAGATTGTTCCAGAGACA
TCCTTTTTTAATTGCTCAACAATGAGGTTGTGGAAGATAAGAATGAACGAGGCAAGGCCTTATGTGTAAATGTGAAGAGA
GGTGTGGGTATTTTTTGTAAAATTGTTATAGTTTGCTTTCTATCCGTCAGATATAGATCGGACGGTCTATATTACAAGAT
GACAGATACATCATCGTCACCAACTCAATCTTTTATAAGAGTAGAGATTATGCAATTTTAGTGTAAGATCTCAATCAGAT
CATTGGTAATAAAGGATGCCTTTGAGATTTGTTTTTGAAAGAACGAGTGGCAGGAAAATGACACTCTCCGGGAAC---AT
CCGGCCTTGTATCACATTGTACGTGATAGGAATAATACTTTTACGCAAATACTCAACTCCTTTCCCGCCGGATACATCCT
TTACGTGGCCGTTGGTCGGCCCTTTTCTTATGTCATGACAATATTTTTTCTATCTTGTTTGGATTAGATTAATCTGACAT
AAAGACGAGATGTGTTTCATCGAAATCTAACTACAGACCAATTATAACACTTAT--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-------S--
-----------------------S------------------------------S-----------------S-------
------------------------------S----------------S--------------------------------
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----------------------------------------------------SSSSSSSSSSS-----------------
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---------------------------------------------------------SS---------------------
---------------------------S-------------------------------------S---------S----
-------------SSSSS-S---SSSSSSSSSSSSSSSSSSSSSSS--S---------------SSSS-SSS-SSSSSSS
-------------------S--S-------------------------------SS--SS--------------------
--------------------S----------S-----------------------------------S------------
-----------------------S--------------------------------------------------------
-------------S--------------------------------------------------------S---------
-------------------------S-----------------S------------------------------------
--S---------------------------------------------------------SS------------------
-S---------------------------------S--------S-------------------S----------SS---
--SS-----S-------S------------------------------------S----S-S------------------
----S--------------------S------------------------------------------------------
----------------------------------------------------------------S---------------
--S-------------------------------S--S-----------S-------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------S-SS---
---S------------------------------------S--------S--------------------------S---
----------------------S---------------------------------------------------------
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--------------------------------------------S----S---S----S----------------SSS--
---------------------S-S----S----S----------S---S-------------------------------
--S--SS--S-------------------S------------S------------S----------S-----S--S----
--S---------------SS--S---------S--S-------S-----S----SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_29
---------CTTCCTCATGGATCCGGCTC---------------------------------------------------
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>reverse_1221
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--------------------TCCACTTCGGCGAACCTAAG----------------------------------------
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>forward_296
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------------------------------------GCCCGTAAATTGGCTTCGAC------------------------
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>reverse_2774
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-----------------------------------------------------CAAAACGACACTCTCCGGGA-------
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