>input_sequence_70999
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-----------------------------------------------------------------------ATGGACGAG
TACCGGCCGCGCCGGTCGCCGGCTACCGAGCGGTTCGTCGGGTTGTTCTCGTCGCCCTCCTCGTCGCCGACGGAGTCGTC
GTTCGTCGCTGGGGATGAGTTCCACGAGGACGACTTCATGTTCTCATCCGC------------CTCGGACGCGCGGCCCG
ACGGGCCAGGGAGCCCCACCCGGGTTCCGCATAGCCACCTCGGTCTCCTCGCCGCGCTGCACGAGGGGGACAAAAGGCTC
CTTGTTCGCCGCGCCGGGGTCGGGAGCGGGGCAGCGGCGTCGGCTGTCGCGGCCACCCCGGCCACGCTGCTCCGGCGCAA
GGCCACCATCGCGGCTGCCACTTCGGCATCTGGTGGTTCGCTGTCGCCCACCCAGTCCCCTGCCTCCGCCGCGTGGGCTA
TCCCGGCGAACCCGAGGCCCAAGAACCGCGCACCGGCCCCGCAGTATCACCAGTCGGCTCCAGTTAAGGTTCCCGTCCGC
CCGCCCCCGAAGCCGGCCATGGACAAGTGGGACGAACTGGACGACGATGACGAGCTCCGACACGGGGATGCCGCCATGCT
GCCCCCGCACGAGATGGTCGCGCGTGCGTCTGCTGGTGGCGCCGGGCCGGCCGCCCCCTTCTCGATGCTGGAGGGCGCCG
GTCGCACGCTCAAGGGCCGAGATCTTCGACGGGTACGGGACGCTGTGCTCCGGCAAACCGGATGGCTCGACTGA------
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>chr2B_1_TraesCS2B01G312200
TAATCACTATAAAATAATTTTGACCTGTTCTCTCTCGAGTGAAGACTAATATTCACTCCATCTCTAATTGCTTTTCTTAG
ATTTCTCTAGACAGGAATAGTGTCTAGCAAGAGATCATGGATGAACTAGCAAGAGAAAAAAAGAAACAAAGGTGTGTCTG
CCCTTAAACTTTGGTGAGAATAACCGGATATTTAATACTCCCTCCGTTCCAAATGAGTTGAATTAGATTTGTCTAGATAC
CAATGTATCTAGACACATTTTAGTGTTAGATACATCCGTATCTAGACAAATCTAGATACTGATGTATCTAGACACGTTTT
AGTGTTAGATACGTCCATATCTAGACAAATCTAAGGCAACTAATTTGACATCGAAATAATATATGCCTAACCACATATCA
TACTGAAGGTAAATTTTCTCTGCGCTTATTTAAACTTCATGTTTGAAAATAGGTAAAATGTTGAATTAAACTTCATGTTT
GAAAGCTGGTAAAATGGAGAAAAATCATACACGACATATATGATAGTAAGTTATCACATTTCTTTTTAACTCATATGAAG
ATTATTAATATAATTATATGATATCAACCCATCGAACTA-AAATCGAGTGAGCCAGCGTTGGCTCAAAATCAGCTAATTT
CTCAATCGACCTGAATAAAATGTTCATACTTTAATTTTG-TTTTGAGTCAATCTC-AAATCGAACCAAAATAC-------
AACGTCTGAGCCTGGAGCTT-TCGTTGCAGCCTATC-----------GCGCCCCATACATAACCGAGCCGAGCAACAAAA
CCGGGCGGGGTGACCCTTCCGGTGGGTCGCAGCCGCGCCCATAAAAACTGAAACCCACCAA-------ACCTCCTTGCCT
TCTCC--CCCCCTTCCCCATCCCCATCACGTCGCCCGGCCGCCCACCGCTGGGACCCCGAGCCCACGGGGCCTTCAACCC
CCACCCGCACGCGCGCGCGCGCCTCCCCTCTGAGCCCTGACCCCCTCGCCGGAGCGGCCGAGCGCGCGCCCATGGACGAG
TACCGGCCGCGCCGGTCGCCGGCTACCGAGCGGTTCGTCGGGTTGTTCTCGTCGCCCTCCTCGTCGCCGACGGAGTCGTC
GTTCGTCGCTGGGGATGAGTTCCACGAGGACGACTTCATGTTCTCATCCGC------------CTCGGACGCGCGGCCCG
ACGGGCCAGGGAGCCCCACCCGGGTTCCGCATAGCCACCTCGGTCTCCTCGCCGCGCTGCACGAGGGGGACAAAAGGCTC
CTTGTTCGCCGCGCCGGGGTCGGGAGCGGGGCAGCGGCGTCGGCTGTCGCGGCCACCCCGGCCACGCTGCTCCGGCGCAA
GGCCACCATCGCGGCTGCCACTTCGGCATCTGGTGGTTCGCTGTCGCCCACCCAGTCCCCTGCCTCCGCCGCGTGGGCTA
TCCCGGCGAACCCGAGGCCCAAGAACCGCGCACCGGCCCCGCAGTATCACCAGTCGGCTCCAGTTAAGGTTCCCGTCCGC
CCGCCCCCGAAGCCGGCCATGGACAAGTGGGACGAACTGGACGACGATGACGAGCTCCGACACGGGGATGCCGCCATGCT
GCCCCCGCACGAGATGGTCGCGCGTGCGTCTGCTGGTGGCGCCGGGCCGGCCGCCCCCTTCTCGATGCTGGAGGGCGCCG
GTCGCACGCTCAAGGGCCGAGATCTTCGACGGGTACGGGACGCTGTGCTCCGGCAAACCGGATGGCTCGACTGAATCCGG
CGAGGTGATGTGGCTCTGGACTTGTATTCAGCTTAGAGTCATAGATTGGTTACATTAGGATATAATTCTTGTGGCGTTGT
AGATCGGAAGGGAAGATGAGAAAGTAAGGTAACAGGTTGAGTTTTTTTGTGTGCAAGTGCTTGCAATTTTGATCTCAGTG
AATTGGAAGGATGTGTCTGTTATTACTGAAGTTTCAACAGTAATAAGAACTTGTGTCATGTATTCGTAAATTGGGAGTTT
TCTGTAATTCAGGAGGAAGGGCAATTTTGTCAACGCTGTTGAGTTTATCTCGACAATTCTCAAGGTTTATTTTTGTCCAC
TCGAATCGAAATGGTATTTCGGTTTTGTTTCTTTATCACGTGATATCACACAATTGCATTTTGTCGTGGTATAAGGTTAA
TTTTTCATGTATGTTCCTTGCCGTATGTGCATTCTCTAATCGTAATTGATATGCTGTTCATCCATGTCTGCCTACTTCCT
AGAGAATTTCAGAGTTCATTGTGTTAACAGTATGATCCCACGCAGAATCTGCTTATGCTTTCGAA-TTCAGAGTTCATTA
TGTCATA----TGCAAGCAATGTATCAAACTCATCAACCAATTATTCTTTGTTGGAAAGCATTGCCGCTTATGTCGTCGG
AAGAACTTTGGTTGGTGCCTTGGTGGCTGTTGCCAGTGTTATCCAGTCATAAGGTATTCTAGTGTATG-GTCTTATTAGG
TGAACTTTTCTT--------------------------------------------------------------------
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------------------AGTATTACTTCTCTACACTTGAATTTATACATCTTATA----AACGATTTACTAGTTTGGAT
TGGTGGCACAATGACTGATTGCTACGCCCATTCTTTTCAAAACGAAACTGATTGCTATGTTTAGGTGTAGTATTCTAGTG
GCAACCATCTGGTCTTATCCAGCAAAATAGATAAACACCACCAACTTCTTTGAACCATTCAATGATGTTTTTCTCTTTAT
GTGTCGATACTTATTCTTGGCTGTGGCATACACTGCTGAAAACTGTAGTT
>chr2D_464
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---------------------------------------------------------------AATTAAACTTCATGTTT
GAAAGTAGCTAAAATGAAGAAAAACTATACATGACATATATGATAGTAAGTTATCACGTTTCTTTTTATCTTATGTGAAG
ATTATTAATATAATTATATGATATCAAC--ATATCAAGCTAAAATGAGTGAGCCAATATCGGCTTAAAATCAGCTCGTTT
CTCGATCAATCTAAATAAAATGTTCATACTCTAATTTCT-TTTTGAGTC-------------------------------
--------------GAACCT-TTGTTGCAGCCTATCAATCACGTCTCGCGCCCCAT--ATAACCGAGCCGAGCAACAAAG
CCGGGCGGGGTGACCCTTCCGGTGGGTCGCAGCCGCGCCCATAAAAAGTGAAACCCACCAGTCACCAGACCTCCTTACCT
TCTCC--CCCCCTTCCCCATCCCCATCACGTCGCCCGGCCGCCCACCGCTGGGACCCCGAGCCCACGGGGCCCTCAACCC
CCACCCGCA--CGCGCGCGCGCCTCCCCTCTGAGCCCTGACCCCCTCGCCGGAGCGGCCGAGCGCGCGCCCATGGACGAG
TACCGGCCGCGCCGGTCGCCGGCTACCGAGCGGTTCGTCGGGTTGTTCTCGTCGCCCTCCTCGTCGCCGACGGAGTCGTC
GTTCGTCGCTGGGGATGAGTTCCACGAGGACGACTTCATGTTCTCATCCGCCCCAGTCGCCGCCTCGGACGCGCGGCCCG
ACGGGCCAGAGAGCCCGACCCGGGTTCCGCATAGCCACCTCGGTCTCCTCGCCGCGCTGCACGAGGGGGACAAAAGGCTC
CTTGTTCGCCGCGCCGGGGGCGGGAGCGGGGCAGCGGCGTCGGCTGTCGCGGCCACCCCGGCCACGCTGCTCCGGCGCAA
GGCCACCATCGCGGCTGCCACTTCGGCATCTGGTGGTTCGCTGTCGCCCACCCAGTCCCCTGCCTCCGCCGCGTGGGCTA
TCCCGGCGAACCCGAGGCCCAAGAACCGCGCACCGGCCCCGCAGTATCACCAGTCGGCTCCAGTTAAGGTTCCCGTCCGC
CCGCCCCAGAAGCCGGCAATGGACAAGTGGGACGAACTGGACGACGATGACGAGCTCCGGCACGGGGATGCCGCCATGCT
GCCCCCGCACGAGATGGTCGCGCGCGCGTCTGCTGGTGGCGCCGGGCCGGCCGCCCCCTTCTCGATGCTGGAGGGCGCCG
GTCGCACGCTCAAGGGCCGAGATCTTCGACGGGTACGCGACGCTGTGCTTCGGCAAACCGGATGGCTCGACTGAATCCGG
CGAGGTGATGTGGCTCTAGACTTCTATTCAGCTTAGAGTCATAGATTGGTTACATTAGCATATAATTCTTGTGGCGTTGT
AGATCGGGAGGGAAGATGAGAAAGTAAGGTAACAGGTTGAGTTTTTTTGTGTGCAACTGCTTGCAATTTTGATCTCAGTG
AATTGGAAGGATGTGTCTGTTATTACTGAAGTTTCAACAGTAATAAGAACTTGTGTCATGTA-TCGTAAATTGGGAGTTT
TCTGTAATTCAGGAGGAAGGGCAATTTTGTCAACGCTGTTGAGTTTATCTCGACAATTCTCAAGGTTTATTTTTGTCCAC
TCGAATCCAAATGGTATTTCGGTTTTGTTTCTTTATCTCGTGATATCACACAATTGCATTTTGTTGTGG--TAAGGTTAT
TTTTTCATGTTTGTTTCTTGCCGTATGTGCATTCTCTAATCGTAATTGATATGCTGTTCAACCATCTCTGCCTACTTCCT
AGAGAATTTCAGAGTTCATTGTGTCAACAGTATGATCCCACGCAGAATCTACTTATGCTTTCGAATTTCAGAGTTCATTA
TGTCTATGAACTGCAAGCAATGTATCAAACTCATCAACCAATTATGCTTTGTTGGAAAGCAATGCCGCTTATGTCGTGAG
AAGAACTTTGGTTGGTGCCTTGGTGGCTGTTGCCAGTGTTCTCCAGTCATAAGGTATTCTAGTTTATG-GTCTTATTAGG
TGAGCTTTTCTT--------------------------------------------------------------------
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------------------AG---TACTTCTCTACACTTGAATTTATACATCTTATATATAAAAGATTTGCTAGTTTGGAT
TGGTGGCACAATGACTGATTGCTACGCCCATTCTTTTCAAAACGAAACTGATTGCTATGTTTAGGTGTAGTATTCTAGTG
GCAGCCATCTGGTCTTATCCA-----------------------------------------------------------
--------------------------------------------------
>chr2A_553
ATATA---------------------------------------------------------------------------
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------------------------------------------------------------------------------AG
ATTGTTAATATAATTATACAATATCAATCTATATCGAGCTAAATTAAGGGAGCCAGTGTTGGCTTAAAATCGTCTCGTTT
CTCAATCAACCTAAATAAAATGATCATATTCTGATTTTTTTTCTTAGTCAATCTGTAAGTCGAACCAAAATACGGAGTAC
AACGTCTGAACCTCGAACTTCTTGTTGCAGCCTGTCC-----------------------AACCGAGCCGGGCAACAAAG
CCGGGCGGGGTGACCCTTCCGGTGGATCGCAGCCGCGCCCATAAAAAGTGAAACCCACCA-------GAACTCCTTACCT
TCTCTCTCCCCCTTCCCCATCCCCATCACGTCGCCCGGCCTCCCATCGCTGGGACCCCGAGCCCACGGGGCCCTCAACCC
CCACCCGCACGCGCGCGCGCGCCTCCCCTCTGAGCCCTGACCCCCTCGCCGGAGCGGCCGAGCGCGCGCCCATGGACGAG
TACCGGCCGCGCCGGTCGCCGGCTACCGAGCGGTTCGTCGGGTTGTTCTCG------------TCGCCGACGGAGTCGTC
GTTCGTCGCCGGGGATGAGTTCCACGAGGACGACTTCATGTTCTCTTCTGCCCCAGTCGCCGCCTCGGACGCGCGGCCCG
ACGGGCCAGGGAGCCCGACCCGGGTTCCGCATAGCCACCTCGGTCTCCTCGCCGCGCTGCACGAGGGGGACAAAAGGCTC
CTTGTTCGCCGCGCCGGGGGCGGGAGCGGGGCAGCGGCGTCGGCTGTCGCGGCCACCCCGGCCACGCTGCTCCGGCGCAA
GGCCACCATCGCGGCTGCCACTTCGGCATCTGGTGGTTCGCTGTCGCCCACCCAGTCCCCTGCCTCCGCCGCGTGGGCTA
TCCCGGCGAACCCGAGGCCCAAGAACCGCGCACCGGCCCTGCAGTATCACCAGTCGGCTCCAGTTAAGGTTCCCGTCCGC
CCGCCCCCGAAGCCGGCAATGGACAAGTGGGACGAACTGGACGACGATGACGAGCTCCGGCACGGGGAGGCCGCCATGCT
GCCCCCGCACGAGATGGTCGCGCGCGCGTCTGCTGGTGGCGCCGGGCCGACCGCCCCCTTCTCGATGCTGGAGGGCGCCG
GTCGCACGCTCAAGGGCCGAGATCTTCGACGGGTACGCGACGCTGTGCTCCGGCAAACAGGATGGCTCGACTGAATCGGG
CGAGGTGATGTGGCTCTGGCCTTCTATTCAGATTAGAGTCATAGATTGGTTATATTAGGATATAATTCTTGTGGCGTTGT
AGATCGGGAGGGAAGATGCGAAAGTAAGGTAACAGGTTGAGTTTTTTCGTGTGCAACTGCTTGCAATTTTGATCTCAGTG
AATTGGAAGGATGTGTCTGTTATTACTGAAGTTTCAACAGTAATAAGAACTTGTGTCATGTATTCGTAAATTGGGAGTTT
TCTGTAATTCAGGGGGAAGGGCAATTTTGTCAACGCTGTTGAGTTTATCTCGACAATTCTCAAGGTTTA-TTTTGTCCAC
TCCTATCCAAATGGTATTTCGGTTTTATTTCTTTATCTAGTGATATCACACAATTGCATTTTGTTGTGG--TAAGGTTAA
TTTTTCATGTTTGTTTCTTGCCGTATGTGCATTCTCTAATCGTGATTGATATGCTGTTCAACCATGCCTGCCTACTTCCT
AGAGAATTTCAGAAGTCATTGTGTCAACAGTATGATCCCACATAC-----------------------------------
-------GAACTGCAAGCAATGTACCAAACTCATCAACCAATTATGC-TTGTTGGAAAGCATTGCCGCATATGCCGTGGT
AAGAACTTTGGTTGGTGCCTTGGTGGCTGTTGCCAGTGTTCTCCAGTCATAAGGTATTCTAGTGTATAAGTCTTATTAGG
TGAGCTTTTCTTAGTACTCCCTCTGTTGCTAGTGTTCAACGGATGTATATAGACATATTTTAGAATGTAGATCCACTCAT
TTTGCTCCGTATGTAGTCCGCATTTGAATCTCCAAAAAGACTTATACTCCCTCAATAGTTGTCATCAAAATGGATGAAAA
GGGATGTATCTAGAACTAAAATACGTCTAGATACATCTCCTTTAATCCATTTTGATGACAAGTATTTCCGGACGGAGGGA
GTATTTAGAAACGGAGGGAG---TACTTCTCTACACTTGAATTTATACATCTTATA----AAAGATTTACTAGTTTAGAT
TGGTGGCACAATGACTGATTGCTACGCCCATTCTTTTCAAAACTAAACTGATTGCTATGTTTAGGTGTAGTATTTTAGTG
GCAACCATCTGGTCTTATCCAGCAAAATAGATAAACAGCACCAACTTCTTTGAACCATTCGATGATG-TTTTCTCTTTCT
GTGTCGATACTCATGCTTTGCTGTGGCATACACTGCTGAAAACTCTAG--
>SNPs
SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
-----SS-S-------S-------SS-----S-------------------------S----------S--S--S-----
-----------------------------S--SSS-SSS-----S-----------S-------S----------SS---
-------S----S-----------------S-------S---------------S---S---------------------
---------S---S--S-----S---------------------------------SS---------------------S
-----------------------------------------------S------------S---------------S---
------------------------------------------------------------------------S-------
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----------------S---------------------------------------------------------------
-------------------S------------------------------------------------------------
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-----------------S-----------------------------------------S--------------------
------------------------S-------------------------------------------------------
-------------------------------------S------------------------------------------
-----------------------S--------------------------------------------------------
-------S------------------------------------------------S-----------------------
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-------S-----------------------------S--------------------------S----SS---------
----------S----S--------------------------------------------S-------------------
------------------------S-------------------------S-----------------------------
----SSS--------------------------------------S-------------------------------S--
----------------------------------------S---------------------------------------
---S----------------------------------------------------------------------------
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--------------------SSS---------------------------------------S-----------------
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-------------------------------------S----------------------S------S----------S-
-----------S--S---S-------------------------S---SS
>forward_164
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----------------------------------------------------------------AACAAAGGTGTGTCTG
CCCT----------------------------------------------------------------------------
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>reverse_2171
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----------ATGTTCCTTGCCGTATGTGC--------------------------------------------------
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