>input_sequence_70981
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---------------------------------------------------ATGGAGAAGCAAGCCGACAAGGCCGCGGC
GCCGGCCGACGACGGCATCCACGAGGAGTCGCCGGCCTCCGCCCAGAACGGGAGGCCCGGATCCGAGCCGGCGGCCGCAC
CCGAGGTGGAGGTGCAGCTCTTCCGGCGGGGCCGGGGGCCAGTGGCCGTGTTCCGGTCGCCCCTGGGCGGGTACACGCAG
GACCAGCTGGAGGTGGGGGACATCCTGGAGAAGCACGGCCTCAAGTGCGTCTTCGCCTTCGACGCCGCCTCCCGCGCGCG
CGGCGTCGCCATCCGATTCAACCCCCGCAACGGCCGCTCCCTCCTCCCCTACGCCGCCGACTCCACCATCTTCCTTGACG
GCGAGCCAAAGGTAGTCGCAA--ACCCAGTCCCCCGTGAAATTTCGCTCAGTTATGTTTACCCTGACGTCTGCCAGGTCT
ACTGTTCTACTCATAGTTAGCAAGTCTTCATATGACGTGTTTGCCTCTTTGGTGATTTAGGATCCTTTGCTGAAGCCCAT
CACGAAGGTGATGCTCACTGTCTGCACCATGACAGTGGTAGTTGCGGTGTTACTCAAGGAGGGGAAGATGCCCGAGTGGC
TTAAGGGAACTAAGCTGGGCAACCTGAAATTCCCACCGTGGGTGCTGGCTTGCATGGTCATTGTCTTCATGAGGCTCCGG
AAGAGAACCAGGGATGTCATGAAGAAGATTGGCTGGTCCTCGTGA-----------------------------------
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>chr3D_1_TraesCS3D01G247500
GATAGTGTTCAAAGTCAAGATTCATATGAATAGTACTACTAAGTTAAATAGCGTACACATGATATACATTTGTCTTTTCT
GTAGAGTTCACAAGATGTTATATCTTGTAATGAGTTTTTGCAGGTGCAAATTATATAGCATAACTTATATCCATAATATT
TCAGGATTTGTGAGAACTCCAAAAATAAAAAA-GAGGGAGAATATGGGGTGCACGGGGACGTGGTGTTTCTCGGCTCGAG
TGAACATTGGCAAAAGTTTCCAGTGCTCACCAAATTTCATCATGGAATGATATTTTTGGATTTCATGGCAAAAAAAAAAA
CTATGCTCCAAAAGTGGTATTTTCGAAAGCATTTTGGAGTGCTGATTTT--TTTTTTGCCACGACTCCCACAAATGTCAT
TTCATGATGAAATTTTGCAGGCACTCAAAAGATTTGTCAACGTTGGCCACAAAAAAAAATATCAGATTTTGTTGTAATTT
ATTTCAATATTTTTGGATTTTACTGTTCATCACGAGCTCAATGAGCTTGCGAGTAGAAGATGACTTTCGGTTCATGGGCA
ACTATTTGCCAAACGTTTCCCGCAAAAAAAAACTATTTGCCAAATTTACTTTCCGGTGTTTCCATCTCCTACTCTCCATA
TAATTCCACCCTTTTAGCACGTGTGCTCCATTCAAAATACCTTTCTGTACGGTACAGAATATTTTT-TACATCACCTTAC
TTCTCCAACAATATGAAATGACACTCCTCTTGATTTGATTGCGGTACTCTTTGTTTCATGAGTGTTGGCCTTCTAATTCT
AAAAAAAAAAC-------CCGAGTGTTGGCCTTCCTTTTTCTGGCCTGGCCCGGTGCCCCGGCAAAGAGATTTTTGCCTA
GAACTTGCCTATTTTTGTTTTTGGTAACCGTAGATTTGTCTCCTATAAGCAGCCCAATTCCCGGCCACAGCGCGAGGCAC
AGATTGGCAGATTCCCTTTTCGCCTTCCCCTGAACCCGATCGAGCAAGCCAATGGAGAAGCAAGCCGACAAGGCCGCGGC
GCCGGCCGACGACGGCATCCACGAGGAGTCGCCGGCCTCCGCCCAGAACGGGAGGCCCGGATCCGAGCCGGCGGCCGCAC
CCGAGGTGGAGGTGCAGCTCTTCCGGCGGGGCCGGGGGCCAGTGGCCGTGTTCCGGTCGCCCCTGGGCGGGTACACGCAG
GACCAGCTGGAGGTGGGGGACATCCTGGAGAAGCACGGCCTCAAGTGCGTCTTCGCCTTCGACGCCGCCTCCCGCGCGCG
CGGCGTCGCCATCCGATTCAACCCCCGCAACGGCCGCTCCCTCCTCCCCTACGCCGCCGACTCCACCATCTTCCTTGACG
GCGAGCCAAAGGTAGTCGCAA--ACCCAGTCCCCCGTGAAATTTCGCTCAGTTATGTTTACCCTGACGTCTGCCAGGTCT
ACTGTTCTACTCATAGTTAGCAAGTCTTCATATGACGTGTTTGCCTCTTTGGTGATTTAGGATCCTTTGCTGAAGCCCAT
CACGAAGGTGATGCTCACTGTCTGCACCATGACAGTGGTAGTTGCGGTGTTACTCAAGGAGGGGAAGATGCCCGAGTGGC
TTAAGGGAACTAAGCTGGGCAACCTGAAATTCCCACCGTGGGTGCTGGCTTGCATGGTCATTGTCTTCATGAGGCTCCGG
AAGAGAACCAGGGATGTCATGAAGAAGATTGGCTGGTCCTCGTGAGCAGGTAGCAACAGTTTTACTAGTTGGTCCTCTCT
TTTATGGTTGAAACGATTCCTGGTGTTGGTTTGAATGCTGCCGTGAAATCTTATGAGTATAATGTGAGACACACTAGGTT
ACTGTCAAAGCTTCATGCTACCAGTACATAGGAAGTGAGTTGTAATA------GG-------------------------
-----TATCGGCCATAGAATGCAAATTATGCTTTAGGGTTTTGCTTTAAATTATCAGCCATAGTTATGAACTATGGTGTT
GTGCCTGTGCAGTTTGAGATCTGGTACAAAGCAAACATACTC-GATGCTTCCAATTAAAACGAAAAATGAACTGTCCATC
CTTAGTTACCCCTAATTACTACTCATTTCATCCGAAAAGGTAAGGCGTGCACATATTCCAAGATTCAGTTACATCTGACC
ATTAGACCAACGACACGTGTATTTATATATGACA--AAAACACGAAGTGATCCTAGCTCTTGTTTTTTCTTTGACAACAA
GGAAGTGATCCTAGCTCACTTTGCTGGGGTAGTGGAGTCGAGAGCTCCTATGGTAGTATAATTT-TGTCTAATTATTGGT
CC----------------GACTTAACCTCAAATTGAATGTGCGCCTTATATTTGGGGTGGAAGGAGTACTAAGAAACTGA
CAGCTTCATGT---------------------------------GTATTTCTGCTACAAAATTTATGTCGTTCCTTGACT
AACTATGGCATGCTATG--CTTCAACAGTT-CGACTTCGTATTTTCATATTTGGTTATCTGAAATTAGGTTTGTCTTGGT
TCTTCCACGGAATTTTAACCTAGCCGCACTTCAATTTTTGACAGGTTACTAGTGGCAAGCACACTTTTGGCGACTCCTTC
CAGTTTGCCGTCAATGTTGGAGATGTACTGGGCAGTGACATACTACATGTAAATGTTCAGAACAAATGCATC---TTATA
GATCACTTATATTTGACCTTATGTTTAGCATATACACGACGCGGTTTGCCAGTGTGGCATTTTTGCTCGTAGCAAGTGTG
CATGAATAAATATAGCCGAA
>chr3A_11
----------AAAGTCAAGATTCATATGAATAGTACTACTAAGTTAAATAGCATACACATGATATACATTTGTCTTTTCT
GTAGAGTTCACAAGATGTTATATCTCGTAATGAGTTTTTGCAGGTGCAAGTTATATAGCATAACTTATATCCATAATATT
TCAGGATTTGTGAGAACTCCAAAAATAAAAAAAGAGGGAGAATATGGGGTGCACGGGGACGTGGTGTTTCTCGGCTCGAG
TGAACATTGGCAAAAGTTTCCAGTGCTCACCAAATTTCATCATGGAATGATATTTTTGGAAGTCATGGCAAAAAACAAAA
G-ATGCTCCAAAAGTGGTATTTTCGAAAGCTTTTTGGAGTGCTGATTTTGGTTTTTTGCCATGACTCCCACAAATGTCAT
TTCATGATGAAATTTTGCAGGCACTCAAAAGATCTGTCAAAGTTGG-------AAAAAGAATCAGATTTTTTTATATTTT
ATTTCAATATTTTTGTATTTTACTGTTCATCAC---------GAGCTTGCGAGTAGAAGATGACTTTCGGTTCATGGGCA
AC-------------------------------TATTTGCCAAATTTACTTTCCGGTGTTTCCATCTCCTACTCTCCATA
TAATTCCACCCTTTTAGCACGTGTACTCCATTCAAAATACCTTTCTGTACGGTACAGAATATTTTTGTACATCACCTTAC
TTCTCCAACAATATGAAATGACACTCCTCTTGATTTGATTGCGGTACTCTTTGTTTCATGAGTGTTGGCCTTCTAATTCT
AAAAAAACAACAAAAAAACCGAGTGTTGGCCTTCCTTTTT-TGGCCTGGCCCGGTGCCC-GGCAAAGAGA--TTTGCCTA
GAACTTGCCTATTTTTGTTTTTGGTAACCGTAGATTTGCCTCCTATAAGCAGCCCAATTCCCGGCTACAGCGCGAGGCAC
AGATTGGCAGATTCCCTTTTCGCCTTCCCCTGAACCCGATCGAGCAAACCAATGGAAAAGCAAGCCGACAAGGCCGCGGC
GCCGGCCGACGACGGCATCCACGAGGAGTTGCCGGCCTCCGCCCAGAACGGGAGGCCCGGATCTGAGCCGGCGGCCGCAC
CCGAGGTGGAGGTGCAGCTCTTCCGGCGGGGCCGGGGGCCGGTGGCCGTGTTCCGGTCGCCCCTGGGCGGGTACACGCAG
GACCAGCTGGAGGTGGGGGACATCCTGGAGAAGCACGGCCTCAAGTGCGTCTTCGCCTTCGACGCCGCCTCCCGCGCGCG
CGGCGTCGCCATCCGATTCAACCCCCGCAACGGCCGCTCCCTCCTCCCCTACGCCGCCGACTCCACCATCTTCCTTGACG
GCGAGCCCAAGGTAAGTCGCGATACCCAGTCCCCTGTGAAATTTCGCGCAGTT-TGTCTGCTGTGATGTCCGCCAGG---
-----TCTACTCATAGTTAGTAAGTCTTCATGTGCCGTGTTTGCCTCTTTGGTGATTTAGGATCCTTTGCTGAAGCCCAT
CACGAAGGTGATGCTCACTGTCTGCGCCATGACAGTGGTAGTTGCGGTGTTACTGAAGGAGGGGAAGATGCCCGAGTGGC
TTAAGGGAACTAAGCTGGGCAACCTGAAATTCCCACCGTGGGTGCTGGCTTGCATGGTCATTGTCTTCATGAGGCTCCGG
AAGAGAACCAGGGATGTCATGAAGAAGATTGGCTGGTCCTCGTGAGCAGGTAGCAACAGTTTTACTAGTTGGTCCTCTCT
TTTATGGTTGAAACAATTCCTGGTGTTGGTTTGAACGCTGCCGTGAAATCTTATGAGTATAATGTGAGACATACTAGGTT
ACTGTCAAAGCTTCATGC------TACATAGGAAGTGAGTTGTAATACTAATAGG-------------------------
-----TATCGGCCATCGAATGCAAATTATGCTTTAGGGTTTTTCTTTAAATTATCAGTCATAGTTATGAACTATGGTGTT
GTGCCTGTGCAGTTTGAGATCTTGTACAAAGCAAAGATACTC-AATGCTTCCGATTAAAACGAAAAATGAACTGTCCATC
CTTAGTTACCCCTAATTACTACTCATTTCATCCGAAAAGGTAAGGCGTGCACATATTCCAAGATTCAGTTACATCTGACC
ATTAGACCAACGACACGTGC--TTTTATATGACA--AAAACACGAAGTGATCCTAGCTCTTGTTTTTTCTTTGACAACAA
GGAAGTGATCCTAGCTCACTTTGTTGGGGTAGTGGAGTCGAGAGCTCCTATGGCAGTATAATTTTTGTCTAATTATTCGT
CCGATTTAACCTCAAATTGACTTAACCTCAAATTGAATGTGCGCCTTATATTTGGGGTGGAAGGAGTACTAAGAAACTGA
CAGCTTCATGTTGACAATAGCCTGGGCATCATTCATGATTTTGTGTATTTATGCTACAAAATTTATGTCGTTCCTTGACT
AACTATGGCATGCTATG--CTTCAACTGTTCCAACTTCGTATTTTCATATTTGGTTATCTGAAATTAAGTTTGTCTTGGT
TCTTCCGCTGAATTTTAACCTAGCCTCACTTCAATTTTTGACAGGTTACTAATGGCAAGCACACTTTTCGCCACTCCTTC
CAGTTTGCCGTCAATGTTGGAGATGTACTGGGCAGTGACATACTACATGTAAATGTTCAGAACAAATACATCTTATTATA
GATCACTTATATTTGACCTTATGTTTAGCATATACACTACGCGGTTTGCCAGTGTGGCATTTTTGCTTGTAGCAAGTGTG
CATGAATAAATATAGCCGAA
>chr3B_809
CGAGTGTTG-----------------------------------------------------------------------
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---------------------------GGCCTTCCTTTCTGGGGCCTGGCCCGGTGCCCCGGTGAAGAGA--TTTGCCTA
GAACTTGCCTATTTTTGTTTTTGGTAACCGTAGATTCGCCTCCTATAAGCAGCCCAATTCCCGGCTACAGCGCGAGGCAC
AGATTGGCAGATTCCCTTTTCGCCTTCCCCTGAGCCCGATCGAGCAAGCCAATGGAGAAGCAAGCCGACAAGGCCGCGGC
GCCGGTCGACGACGGCATCCACGAGGAGTCGCCGGCCTCCGCCCAGAACGGGAGGCCCGGATCCGAGCCGGCGGCCGCAC
CCGAGGTGGAGGTGCAGCTCTTCCGGCGGGGCCGGGGGCCGGTGGCCGTGTTCCGGTCACCCCTGGGCGGGTACACGCAG
GACCAGCTGGAGGTGGGGGACATCCTGGAGAAGCACGGCCTCAAGTGCGTCTTCGCCTTCGACGCCGCCTCCCGCGCACG
CGGCGTCGCCATCCGATTCAACCCCCGCAACGGCCGCTCCCTCCTCCCCTACGCCGCCGACTCCACCATCTTCCTCGACG
GCGAGCCCAAGGTAAGTCGCGATTCCCAGTCCCCTGTGAAATTTCGCGCAGTT-TGTCTGCTGTGATGTCCGCCAGG---
-----TCTACTCATAGTTAGCAAGTCTTCATGTGCCGTGTTTGTCTCTTTGGTGATTTAGGATCCTTTGCTGAAGCCCAT
CACCAAGGTGATGCTCACTGTCTGCGCCATGACAGTGGTAGCTGCGGTGATACTGAAGGAGGCGAAGATGCCCGAGTGGC
TTAAGGGAACCAAGCTAGGCAACCTGAAATTCCCACCGTGGGTGCTGGCTTGCATGGTCATTGTGTTCATGAGGCTCCGG
AAGAGAACCAGGGATGTCATGAAGAAGATTGGCTGGTCCTCCTGAGAAGGTAGCAACAGTTTCACTCTTTGGTCCTCTGT
TT-----------------------------------------------------------------------------T
ACTGTCAAAACTG-ATGC------TACTCAGTAAATGAATTGTAATA------GGTATAACATGTAGGCCGATAGACAGT
GACAATATCGGCCATAGAATGCAA-TTATGCTTTAGAGTTCTGCCCTAGATTATCAGTGATAGTATCAACTAGA--TGTT
GTGCCTGTGCAGTTTGAGATCTGGTACAAAGCAAAAATACTCAAATGCTTCTGATTAAAAAGAAAAATGAAGTATCCATC
CTTAGTTACCCCTAATTACCACTCATTTCATGCCAAAATGTAAGGCATGCACACATTCCAAGATATAGGTTACACTGACC
ATTGGACCAACGACACATGG--TTTTATATGACACAAAAACAGGAAGTCACCCTAGCTCTTCTTTTTTCTTTGACAACAA
GGAAGTGA-CCTAGCTCAATTGGTTGGGGTAGTGGAGTCGAGAGTCCTA----------------TGTCTAATTATTGGT
CC----------------GCCTTAACCTCAAATTGCGTGTGCACCTTATATTTTGGGGTGGAACGCTAAGAAAA-----A
CAGCTTCATGTTGAGAATAGCCTGGGCATCATTCATGATTCTGTGTATTTCTGCTACAAAATTGATGTCGTTCCTTGACT
AACTATGGGATGCTATGTGCTTCAACAGTT-CAACTTCGTATTTTCATATTTGGTTATCTGAAATTAAGTTTGTCTTGGT
TCTTCCATGGAATTTTAACCTAGACGCAC--------TTGACAGGTTACTAATGGCAAGCACACTTTTGGCCCCTCCTTC
CAGTTTGCCGTCAATGTTGGAGATGTACTGGGCAGTGACATACTACATGTAAATGTTCAGAACAAATGCATCT---TATA
GATCACTTATATTTGACCTTATGTTTAGCATATACACGACGCGGTTTGCCAGTGTGGCATTTTTGCTTGTAGCAAGTGTG
CATGAATAAATGTAGCCGAA
>SNPs
SSSSSSS-SS------------------------------------------S---------------------------
-------------------------S-----------------------S------------------------------
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------------------------------------------------------------SS-------------S----
SS----------------------------S------------------------------S------------------
---------------------------------S------S-----SSSSSSS-----SS----------S--S--S---
---------------S-----------------SSSSSSSSS--------------------------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
------------------------S-------------------------------------------------------
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-------S--------------------------------S-----------------------------SS--------
--------------------------------------S--------------------------S--------------
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----------------------------------------S---------------------------------------
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-------S------SSSSSSS-------------S------------S-----S---S-S-SS---S---S------SSS
SSSSS--------------------------S--S---------------------------------------------
-------------------------S----------------------------S-------------------------
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--------------S--------------------S-----------------------------------S--------
------------------SSSSSS--------------------------------------------------------
---------------------------------------------------------S----------------------
-----------------------------------S-------S--------S---------------------------
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-------------------SSS--S-------------------------------------------------------
-----------------------S-----------------------------S--------------------------
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--------------------------------S----------------------------------S------------
---------------------------------------------------S-------------------S--------
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>forward_665
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-----CCACCCTTTTAGCACGTGTG-------------------------------------------------------
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>reverse_2264
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-----------------------CTGGGGTAGTGGAGTCGAGA-------------------------------------
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