>input_sequence_70973
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--------------------------------AAAGACAAAACGTCTGACACAACCACCACTAAAACCAGCGCAAAGATG
ATGAGGCATTCCCAAGCTCTCTCGCAGCTCGCCGTCCTCCTCCTCCTCTTCCTCCTCGTCTCATCCAGCGCCGCTTCCAC
TCTAGACGACACCTGCAAGTCCGTCAGCGCGAGCAACAGGGACCTCGGCTACGACTACTGCGTCAAGTTCTTCAAGGCGT
GCAAGGACAGCGCCACCGCGGACAAGCGCGGCCTGGCCGTCATCGCCACGAAGATCATCCGAGCGGCAGCCGTGAACACC
GGCAGGCGCATCGCCACCATCAAGGCCTCGCACGGGGACGACAGGAGGATCCAGGGCCCGCTCGCCGACTGCGACGAGCT
GTACTCGAGCGCCGTGGACCAGCTCGACGCGGCGGCGAGGGGCATCTCGTCGGGGAAGTTCCAGGACGCCCTGACGAACC
TCAGCGCCGCTGCGGACGCGCCACAGACCTGCGAGGAAGGGTTTCGCGAGCTGGGCGTGAGTTCGCCGCTGGCCGACGAG
GACTCCAAGTTCAGTAAGGAGTGCTCCATCGCTCTCGCTGTAACGAACACGTTGTAAGCGACAAAGTCTATTAGTCATTT
GGATCAATATAAATAATCCTGGAATACAATTTTAGACCAGATAAACTCCGCAATCACGTTTGGCCGCACTTTCCTTTGTT
GTTCTATAAATTATACTCCCTCTG--------------------------------------------------------
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>chr2A_1_TraesCS2A01G452700
TAACGGCGCAACGCGTAAGGATCGACCTGCACGGCAGCGGCGCCAACGCTCAGGCAATGAGGCAAGTCAGTCTGC-GAGT
GCGATCGGGATTGGGGCATGACCGTGACACGCCATCTCGTCACGAATTCACCATCAGGTTTTCCCTC--AAAAAAT-CAC
CATCACGTATACACCCTAACAGAACACCAAGCCCATTTAATTTACTCCATTTTCCTTTAACGGATACATACGCATGTCGA
TGATTATGAACGTGCATCTATTAATTTTGTTCTT----GTCATCTTTCATGTACTCCCTCCGTTCCTAAATATTTGTTTT
TATAGAGGTTTTAAATGGTGACTACATATGGAGTAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTA
TGTAGTGACCATTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGCACATCAATACGTGTGCATTATCGTTC
AACTTTTGCATACTTCCAACCCACGTCTTCTGCATACCGGCCGGGTTAGACGATAATCCTGATCATCGAAATCAGAAGTT
GCAAAAGAGACAAAGATAA-------------------------------------------------------------
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-------------------TATAGGTTTTAACTCAATTTCAGAA--------CAAGCTAGGTAGTGGTTTATATTATAAA
ACAACCGTAAGTTCCGTCTAATAACCAGATATTGCACGTGATGTTAATGTTGCAGTTAAGATTTTGAAGACATTTACACG
TTCAAGCAACAGGTACAGTACTTGGTCCAT-CCTGTTATAATTACAGTACAGTTACATTGTTATTACTCTTAGCGCTTAA
ATTTGAGCTTT---GTCCAGAGATTTGCTTCGTCCTCCTCCATCTAAT--------CAGATACCTACACGACTGGTCCA-
----------------GCCGGAGTCGCAGTCACTGAGCTCCACGATGAGGTCCACGCCCCCGGCGTCTACAGTTAATCAT
ACCCGAATTTCCCATCGAGCGGACGCCACCTGAATTTC-----CTAGCAGGATCTTCCGTCCC--------TATAT----
----------ATATCGGCTCCCTCCACATCCAAAAGACAAAACGTCTGACACAACCACCACTAAAACCAGCGCAAAGATG
ATGAGGCATTCCCAAGCTCTCTCGCAGCTCGCCGTCCTCCTCCTCCTCTTCCTCCTCGTCTCATCCAGCGCCGCTTCCAC
TCTAGACGACACCTGCAAGTCCGTCAGCGCGAGCAACAGGGACCTCGGCTACGACTACTGCGTCAAGTTCTTCAAGGCGT
GCAAGGACAGCGCCACCGCGGACAAGCGCGGCCTGGCCGTCATCGCCACGAAGATCATCCGAGCGGCAGCCGTGAACACC
GGCAGGCGCATCGCCACCATCAAGGCCTCGCACGGGGACGACAGGAGGATCCAGGGCCCGCTCGCCGACTGCGACGAGCT
GTACTCGAGCGCCGTGGACCAGCTCGACGCGGCGGCGAGGGGCATCTCGTCGGGGAAGTTCCAGGACGCCCTGACGAACC
TCAGCGCCGCTGCGGACGCGCCACAGACCTGCGAGGAAGGGTTTCGCGAGCTGGGCGTGAGTTCGCCGCTGGCCGACGAG
GACTCCAAGTTCAGTAAGGAGTGCTCCATCGCTCTCGCTGTAACGAACACGTTGTAAGCGACAAAGTCTATTAGTCATTT
GGATCAATATAAATAATCCTGGAATACAATTTTAGACCAGATAAACTCCGCAATCACGTTTGGCCGCACTTTCCTTTGTT
GTTCTATAAATTATACTCCCTCTGTAAACAACTTCAGTGGATTTTTATTGTTCTTAAGTAGTGATCTAAACGCTCTTATA
TTAATTTATGAAAAGTGTGAAAGTAAGTAACAAGGTCAGTGGATTTTTGGCCTCATGGCTCGCGGATGCTGTCCGATGCC
TAGATCTCCGCATATGTGATGATGGTGAAGTTTCTCAAAAAAAAATATGATCATGGTGAAATAGCAGTCACTAAGAAAAC
GGCACACAATTTGCGGACG--ATCGTGGCCATCAAAGCGAATGCATG----AACATCCATCGAGCATCAATGTTTGTCAA
TGTTCAGGAGATCTGGCGGCATGGGATGAGATGCCCACGCGCGGCACGCTACCGAATTTTGTACGCAAGAGATGCTTGCC
AGACAAGTGCAAGATTATATTATTGTTGGCAATC-------------------AAATACGCCCACACGTATTAGTTGCCA
CATACATCAAAATAGCGGATGCCGGTATCCTTTTGTTTAGTCATATCATTTTAAGTGTTT-----TACAGCGAAACGTCA
CAACGAATGGTTGCAGAACGAATCTGATACTGATACCGGTAGCACATGATGGATGCATGGGTCATGCTGTGTCCGGC---
-------------------GGCGCCGGCCTCACCGCGGGTAAGGTCCAGCCACGAAGGTCATGTCCAGTCAGGCAGTCAG
CGTCGTCGCGCGCGGATGGAGGCGGCAAACCAGCGT----GCGCGAACGTTTCGAGCCGAAGGTGCAAACTTCG------
-----------------------------GGAAAATTGGCC-----------------ACGATAATCCTAAATTTTACTG
TGTGGGCATCATGATTTCCAACCAAATGTTACCATGCACTTCCACTTCTTTTCTTTTCTTTTTTCTTTGAAATCATGTAC
TTCCTTTTTAAAGAAATATAAGATGTTTTAGATCCCTAGCAATGATTTGAAACATTATATTTCTTTCTCGCCGGAGTCGG
ACAAACCTTGTTGTAGTAGACAATCGGAAAGTCGTCGTGCTAATGCTCCACATGACCGGCACACCAGAACAGCAACCACC
GTCGATGATGAG
>chr2D_17
----------------AAGGATCGACTTGCACGGCAGCGGCGCCAACGCTCAAGCAATGACGCATGTCAGGC--C-GAGT
GCGATCGGGATTGGGGCATGACCTTGACACGCCATCTCGTCACGAATTCACCATCAGGTTTTTCCCTCAAAAATTT-TAC
CATCACGTAT-------------ACACCAAGCCCATTTAATTTAGTCCATTTTCTCTATCGGATACGTGTT-----TCGA
TGATTATGAAAGTGCATCTATTAATTTTGTTCTT----GTCATC-TTCATGT----------------------------
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------------------------------------------------------ACATCAGTACATGTGCATTATAGTTC
AACTTTTGCATACTCCCAACCCACGTCTTCTGCATACCGGCCGGGTTAGACGATAATCCTGATCATCGAAATCAGAAGTT
GCAAAAGAGACAAATATAATATAGGTTTGAGGTGTCTAGGCACCCCCTTATCAAAACCATACGTTCAGAATTCACCGCAT
AGAGATTTGTGCCATGTACTGTACCGTAATTTGATTAGCAAACGGAGTGGCTGTTAAGCGCGGGAGGTTGCTGTCCGTGA
CATGCGGCCAGAGTACATCAACAGTGGCCCTCGCAATGTTCATCTGACATAGATTCCATTTCTCTACCAGCTGAGAGAAA
CAACATGACAATTCTCTCCGTTTTTTTAGTGTAGTACACTGTTGAGTGAGAGAACGCTGCTGCATCAGACTTTTTGGAGA
AGTGACAGAAATAATGGAGAGAGAGAGAGAGCGCGCCTATGAGAGAGAACTTCACTTTCTTCTGAAGAAGTGACACAGAA
AAAATGGAGAGAGGGAGAGAAAGCTTGTGACAGATAAACGTTGGAGTTTACATGACAGAGAACAAAGAAATAAAAAAAAG
TAGTATGACGCGCCAGAAGGAGGAAAAAGGAAGAAGTAAGTGAAGGAAAGTAGTATGAGGCTGATGTGATGTTCCTGGGG
TCCATGCACAAACGCCGCATGCACCGCAGACGCCACATGCAAAAGCCCATGACCTGTCCTTTCAACTCCGGCCAGGCCTA
CCACCGTGCACGGTTTTACCTCTGCAAAAGCCTACTCTGCCTCACACAACCTACCTGCTTAATTAAACCTGCCACCGCTA
ATAACCTGCTGCGGCCTGCAACACTGCACGAATCTTAAAAAGGCTGGACGCGCCAGATAAGAGGGTGCCGGGGAACCCGG
GTGCCATCACACCTTTTCGTATAGGTTTTAACTCAATTTCAGAA--------AAAGCTAGGTAGTAGTTTATATTATAAA
ACAACCATAAGTTCCGTCTAATAATCAGATATTGCACTTGATGTTAATGTTGCAGTTAAGATTTTGGAGACATTTACACG
TTCAAGCAACAGGTACAGTACTTAGTCCAT-CCTGTTATAATTACAGTACAGTTACATTGTTATTACTCTTAGCACTTAA
ATTTGAGCTTT---GTCCAGAGATTTGCTTCGTCCTCCTCCATCTAAC--------CAGTTACCTACACGACTAGTCCAG
CCGGCGTAGCAGCAGCGCCGGAGTCGCAGTCACTGAACTCCACAACGAGGTCCACGCCCCCGGCGTCTACAGTTAATCAT
ACCCGAATTTCCCATCGAGCAGACGCCACCTGAATTTCATTGCCTAGCAGGATCCCCCCTACGTCTCTCTATATAT----
----------ATATCGTCTCCCTCCACATCCAAAAGACAAAACGTCTGACACAACCACCACTAAAACCAGCGCAAAGATG
ACGAGGCCTTCGCAAGTTCTCCCGCAGCTCGCCG---TCCTCCTCCTCTTCCTCCTCGTCTCGTCCAGCGCCGCTTCCAC
TCTAGACGACACCTGCAAGTCCGTCAGCGCGAGCAACAAGGACCTCGCCTACGACTACTGCGTCAAGTTCTTCCAGGCGT
GCAAGGGCAGCGCCACCGCGGACAAGCGCGGCCTCGCCGTCATCGCCACGAAGATCATCCGAGCGGCGGCCGTGAGCACC
GGCAGGCGCATCGCCACCATCAAGGCATCGCAAGGGGACGACAGGAGGATCCAGGGCCCGCTCGCCGACTGCGACGAGCT
GTACTCGAGCGCCGTGGACCAGCTCGACGCGGCGGCGAGGGGCATCTCGTCGGGGAAGTTCCAGGACGCCCTGACGAACC
TCAGCGCCGCTGCGGACGCGCCGCAGACCTGCGAGGAAGGGTTCCGCGAGCTGGGCGTGAGTTCGCCGCTGGCCGACGAG
GACTCCAAGTTCAGTAAGGAGTGTTCCATCGCTCTCGCTGTAACGAACACGTTGTAAGCGACAAAAGTCTATAATCATTT
GGATCAATATAA----TCCTGGAATATAATCCTGTATGGATCGTGGTGAAC-----------------------------
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--------------------------------------------------------TGACATAGCAGTCATTAAGAACAC
GGCACACAATTTG-GGACG--ATCGTGGCCATCAAAGCGAATGCATG----AGCATCCATCGTGCATCAATGTTTGCCAA
TGTTCAGGAGATCTGACGGCATGGGATGAGATGCCCATGCGCGGCACGCTAACGAATTTTGTACGCAAGAGATGCTTGCC
AGGCAAGTGCAAGATTATATTATTGTTGCCATTTGTTGATTAGCAAGGCAATCGAATACGCCCACACGTATTAGTTGCCA
CATACATCAAAATAGCGGATGCCGGTATCCTTTTGTTTAGTCATATCATTTTCAAGTGTTTTACGTACAGCGAAACGTCA
CAACGA-TGGTTGCAGAACAAATCTGATA------CCGGTAGCACATGATGGATGCATGGGTCATGCTGTGTCCGA---C
GGCGCCGCAGCCTGCAGGTGGCGCCAGCCTCACCGCGGGTAAGGTCCAGCCACGAAGGCCATGTCCGGTCAGGCAGTCAG
CGTCGTCGCGCGCGGATGGAGGCGGCAAACCAGCGT----GCGCGAACGTTTCGAGTCGAAGATGCAAACTTATTTTTAT
TTTTTTTGCGGGGGAAAGATGCAGACTTCGGAAAATTGGCCACGATGATTCTAAGCTTACGATAATCCTAAATTTTACTG
TGTGGGCCTCATGATTTCCAACCAAATGTTACCATGTACTTCC-------------------------------------
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>chr2B_18
-----------------AGGATCGACTTGCACGGCAGCGGCGCCAACGCTCAGGCAATGAGGCAAGTCAAGCTGCTGAGT
GCGATCGGGATTGGGGCATGACCGTGACACGCCATCTCGTCACGAATTTACCATCAGGTTTTTCCTC--AAAAAATTCAC
TATCAGGTATACACCCTAACAGAACACCAAACCCATTTAATTTAGTCCATTTTCTCTATCAAATACGTATT-----TGGA
TGATTATGAAAGTGCATCTACTAATTTTGTTCTCGTACGTCATCTTTCATGT----------------------------
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------------------------------------------------------ACATCAGTACATGTGCATTATAGTTC
AACTTTTGCATACTTCCAACCCACGTCATCTGCAGACCGGCCGGGTTAGACGGTAATCCTGATCATCGAAATCAGAAGCT
GCAAAAGAGATAAAGATA--------------------------------------------------------------
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--------------------ATAGGTTTTAACTCAATTTCAGAAGGAAAAAAAAAGCTAGGTAGTGGTTTATATTATAAA
ACAACCATAATTTCCGTCTAATAATCAGATATTGCACTTGATGTTAATGTTGCAGTTAAGATTTTGAAGACATT-ACCCG
TTCAAGCAACAGGTACAGTACTCAGTCCATCCCTGTTATAATTACAGTACAGTTACATTGTTATTACTCTTAGCACTTAA
ATTTGAGCTTTGTCGTCCAGAGATTTGCTTCGTCCTCCTCCATCTAATCAGTTATTCAGTTACCTACACGACTAGCCCAG
CCGGCGTAGCAGCAGCGCCGGAGTCGCAGTCACCGAGCTCCACGATGAGGTCCACGCCCCCGGCGTCTACAGTTAATCAT
ACCCGAATTTCCCATCCAGCAGACGCCACCTGAATTTCATTTCCTAG-AGGATCCTCCCTACGTCTCTCTCTCTATATAT
ATATATCGTGATGTCGTCTCCCTCCACGTTCAAAAGACAAAACGTCTGACACAACCACCACTAAAACCAGCGCAAAGATG
ATGAGGCCTTGGCAAGCTCTCTCCCAGCTCGCCG---TCCTCCTCCTCTTCCTCCTCGTCTCGTCCAGCGCCGTCTCCAC
TCTGGACGACACCTGCAAGTCGGTCAGCGCGAGTAACAAGGACGTCGGCTACGACTACTGCGTCAAGTTCTTCCAGGCGT
GCAAGGGCAGCGCCACCGCGGACAAGCGCGGCCTGGCCGTCATCGCCACGAAGATCATCCGAGCGGCGGCCGTGAGCACC
GGCAGGCGCATCGCGACCATCAAGGCATCGAAAGGGGACGACAAGAGGATCCAGGGGCCGCTCGCCGACTGCGACGAGCT
GTACTCGAGCGCCGTGGACCAGCTCGACGCGGCGGCGAGGGGCATCTCGTCGGGGAAGTTGCAGGACGCCCTGACGAACC
TCAGCGCCGCTGCGGACGCGCCACAGACCTGCGAGGAAGGGTTTCGCGAGCTGGGCGTGAGTTCGCCGCTGGCCGACGAG
GACTCCAAGTTCAGTAAGGAGTGCTCCATCGCTCTCGCTGTAACGAACACGTTGTAAGCGACAAAGTCTAT-AATCATTT
GGATCA----------------AATATAATCCTGTATGGATCGTGGTGAAC-----------------------------
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--------------------------------------------------------TGACATAGCTGTCATTAAGAAAAC
GGCACACAATTTGCGGACGATATCATGGCCATCAAAGCGAATGCATGCATGAACAACCATCGTGCATCAATGTTTGTCAA
TGTCCAGGAGATCTGACGGCATGGGATGAGATGCCCATGCGCGGCACGCTAACGAATTTTGTACGCAAGAGGTGCTTGCC
AGATAAGTGCAAGATTATATTATTGTTGCCATTTGTTGATTAGCAAGGCAATAAAATACGCCCACACGTATTAGTTGCCA
CATACATCAAAATAGCGGAGGTCGGTATCCTTTTGTTTAGTCATATCATTTTCAAGTGTTTTATGTACAGCGAAACGTCA
T---GA-TGGATGCAGAACAAATCTGATAGTGATACCGGTAGCACATGATGGATGCATGGGTCATGCTGTGTCCGGCGGC
GGCGCCGAAGCCTGCAGGTGGCGCCAGCCTCACCGCGGGTAAGGTCCAGCCACGAAGGTCATGTCCAGTCAGGCAGTCAG
CGTCGTCGTGAGCGGATTGAGGCGTCAAACCAGCATGCGCGCGCGAACGTTTCGAGTCGAAGGTGCAAACTTCA------
-----------------------------CAAAAATTGGCT---ATAATTTTAAGCTTACGATAATCCTAAATTATACTG
TGTGGGCCTCATGATTTTTAACCAAATGTTACCGTGTACT----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSS----------S-------------------------------------------S---------
--------------------------------------------------------------S-----------------
--------------------------------------------S---------SS-SSSS-SSSSSSSSSSSSSS----
----------S-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---S----------S----
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----------------------------------------------------S---------------------------
------S-----------------S------------S------------------------------------------
-----------------------S--------------------------------------------------S-----
-----------------------------------------------------------S-------------S------
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--------------------S---------------------------------S---S-S-S-----------------
----------------S---------------------------------------------------------------
-------S---S----------------------SSS-------------------------S-----------------
--------------------------------------S----------------------------------S------
------S------------------------------------------------------------S-------S----
--------------------------S-----S-----------------------------------------------
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-------------------------------------------------------------------------S------
------------SSSS----------S---SS-SS-SSSSSSSSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S---------
--------------------------------------------------------------S-----------------
---------------S---------------------S-------------S----------------------------
----------------------------S--S-S----------------------------------------------
----------------------------------------------------S-SSSS----------------------
------S------------S---------S--------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------S----------------S------
--------------------------------------------------------------------------------
-------S----------------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_461
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-----------------------------------------GAACGGAGGGAGCACATCAA-------------------
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>reverse_2543
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--------------------------------------------------------------GCCGCACTTTCCTTTGTT
GT------------------------------------------------------------------------------
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>forward_2087
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-------------------------------------------------------------------TTCTTCAAGGCGT
GCAAGGA-------------------------------------------------------------------------
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>reverse_3622
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---------------------AATCGGAAAGTCGTCGTGCT---------------------------------------
------------
