>input_sequence_70916
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------------ATGGCGGCCAACGTGGGGGAGTCCACGAGCGGCAGCGGCAGCAGCGTGGCTGGCGACGGCGGGGGCAG
CTTCGAGTGCAACATATGCTTCGAGCTGCCGCAGGAGCCCATCGTCACGCTCTGCGGCCACCTCTTCTGCTGGCCCTGCC
TCTACAAGTGGCTGCACATCCACTCGCACTCGCCCGAGTGCCCCGTCTGCAAGGCCGTCGTCGAGGAGGACAAGCTCGTC
CCGCTCTACGGCCGCGGCAAGGACCGCGTCGACCCCAGGTCCAAGGGCGTGCCGGCCGGGGCCGAGATCCCCAACCGGCC
GACCGGGCAGCGGCCTGCCACGGCCCCGCAGGCAGATCCCAACAACCACTTCCCTAATGCGAACCCTAACCCCTGGTTCA
TGGGGGGAGGGGGCGTCCCTCTGGCCAACGCGCGGTGGGGGAACTACACCTTCTCGGCCGCGTTCGGCGGCCTGTTCCCG
CTGCTGAGCTTCCAGGTGCATGGATTCCCGGACGCGGCCGCGTACGGGCAGCCTGCCGGGTTTCCCTATGGGTACGGCCA
TGGCCATGGC------CACGGGCATGCTTTCCATGGCGGGCACGCCCACGCCGCCGCCCCCCGGCACGCGCCGCCCGGGC
AGCAGCAGCAGCAGCAGCAGGCGGACGTGTACCTCAAGGCGCTGCTCATCCTGGTTGGCTTTCTCGTGATCGCAAGCCTC
ATCACATTCTAG--------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G014800
TCAGAAACAATTAATAACTCGCATCGCAGGCAGCGAGAGGGAGAGGGAGCGACTAGTCGCCTATTCATATTCATACTCTC
CTTGTCATCTTCATCTTCCTTCCCCCACTTGTTCCCCGAAGCTTCTCGTCCGCTCCTCTCGCACC---------------
GCCGGAGGGAGGCGCCTCGCCGTCTCCTCGCCGCCGGTAAGCAGTCCCACCCTCTCCCCCTGATCCGCCCCCCGCGCCTC
CTCGCGGCCCTCGTCTCCGC----------GCCAGATCGCGGCCGCCTCGGCGTGCCTCCCGATTCGGATCTGCCCGGTT
CCTCGGCCTCGCTCGTCGCGGCTCGCCGGGCGCCTCCTTGCGCGGGGCCCGTCCCCGTCGCCGGGCT-------------
----------------CGGGGGACAGAGCTTCTGGCCCTAGTTCTCGCCCGCCTAGCCTGTCTGCCTGCCCGTGCCGCCG
CCGCCGCCGCTGACGGTTTAGTCTAGCCTAGT------------TTTCTCCCAA--------------------------
-----GTCCTGCCTGCGCG--TGCTGGCGGGTGGCCGAGCTCCAGATCTCGTAGCTGCCGTGTCCCTGCCCG--------
AAAGGGGAGGGTTGGGGTTG------TTTTTCTTTTCCCCCAATGCGTCGACTAGATTCAAGTTGCTACTTCT-------
-GCTAGTCGCTCTCATTCATTCCTTGTTTGAGCATCCTTATTATGACAAACCTGGTTGCTTATT-GCTGTCACGAATCTA
CACAGAAATCTGACTTGTAAACCTCTACCCGTGGATAGATTTGTTAGGGATTCCATCATTGCTTCACAAGATAGCTCCAC
ATCTGGCTAGCCTTACTTTGGTACA----------TACATAGATAGATTTGTCAGCGATTCGATCCTTGCTTGACAAGAT
AGCTGCACATCTGGCTAGTCTTACTTTTAATGTGCGTTTCGCCTTTGAGATGCGCTGCAATTTACAAGCTGTTTGGTTGC
TCTGTGTTGTTGAGTTGCTGATGATCATAGCCATTTGATCCGTTGCAGCTCGTCGAGGGTGGTTCCTGGCGAGCGACTGA
AGCCCAGCCAGCATGGCGGCCAACGTGGGGGAGTCCACGAGCGGCAGCGGCAGCAGCGTGGCTGGCGACGGCGGGGGCAG
CTTCGAGTGCAACATATGCTTCGAGCTGCCGCAGGAGCCCATCGTCACGCTCTGCGGCCACCTCTTCTGCTGGCCCTGCC
TCTACAAGTGGCTGCACATCCACTCGCACTCGCCCGAGTGCCCCGTCTGCAAGGCCGTCGTCGAGGAGGACAAGCTCGTC
CCGCTCTACGGCCGCGGCAAGGACCGCGTCGACCCCAGGTCCAAGGGCGTGCCGGCCGGGGCCGAGATCCCCAACCGGCC
GACCGGGCAGCGGCCTGCCACGGCCCCGCAGGCAGATCCCAACAACCACTTCCCTAATGCGAACCCTAACCCCTGGTTCA
TGGGGGGAGGGGGCGTCCCTCTGGCCAACGCGCGGTGGGGGAACTACACCTTCTCGGCCGCGTTCGGCGGCCTGTTCCCG
CTGCTGAGCTTCCAGGTGCATGGATTCCCGGACGCGGCCGCGTACGGGCAGCCTGCCGGGTTTCCCTATGGGTACGGCCA
TGGCCATGGC------CACGGGCATGCTTTCCATGGCGGGCACGCCCACGCCGCCGCCCCCCGGCACGCGCCGCCCGGGC
AGCAGCAGCAGCAGCAGCAGGCGGACGTGTACCTCAAGGCGCTGCTCATCCTGGTTGGCTTTCTCGTGATCGCAAGCCTC
ATCACATTCTAGGTTCGTCGGTTCCCACCATTGTCATTTGTCACCGTCATAATAAGAGAAACAACGATTGTCGTGATACT
TCTCAGATGTTGTGTGCATTACCTTGGCCCCCCCATAC-AAAGCCCCGGTCTAAATCCGAGTGGTGCGTTTTGAGCGAAA
GTGTTCATAGAACTCCTGTATATATGTGCTATTTAGACGCGGTCCTG-TGGGGGGGCGCATGTGTACCGTAGTAGTTTCG
CGCTGATTCGCGGATGATTTGGGAAACCTCTGTTTGGAGTGGATGTACCAGACCAATTATATATCATGTGTAATTTTGAT
TCGACTGTCCCAAGTGAGTGGGGTGTGTGTGCAGCTATTTGGAGTCCATGTCTTTTCTTCCTCTTCTGTACCCTA-TGTT
AACATGCTTTGCGACGATGGCTGTAACTCCGTCATGTCAGTGTTCATGTTAGAATACTGATGGATTCTTACCTTCTTTAT
CTATTTGGAGTATAATTTTGGTTTGACTGTCAAAATGAGTGGGGGTGTGCTGCCATTTAGAGTCAATCTATATAAGGTGA
TGTCAGTAACTTGCTAACTGCATCTTGTCTGGAAACCAACAACCATGTTGGTGCCCGTGTTAGAAGGAGAACTGGCACAT
TCTTCTCTCTCTGCTGATAAAGAGGTTTGATTTTACAGTCGATGGTTTATGATTCCGGGCCGAATCAGTCATGTTGACGC
GGTTCAGGTGCATCTTCCAGTAGTCTGAACATATGGGGATCTGTCGTCGATGTTGCGAGTCCTGTTGCATTGCCTGGGAG
GCCTGATAGATACTCAGTTAGCCTGCTCGGTGCCACTTGTATGATGTGAAGGTAGATGGTGTATACTGCAAGCCATGATG
CTTTGGAATTGGAAGGATAGGTTATCTGGTTCATGGTTGGGAGACCTCTGGAGTCTGGGCCAGCATCAGAAGGATCTGTT
CTTGTTTTCAGCCAGGAGCCAGCAACCTCCAGGACAAATTTGAAGTTCACGGAGT
>chr5A_70
---------------------------------------------------------------------TTCATACTCTC
CTTGTCATCTTCTTCCT-----CCCCACTTGTTCCCCGAAGCATCTCGTCCCCTCCCCTCTCCTTCTCTCGCACCGCCGG
GCCGGAGGGAGGCGCCTCGCCGTCTCCTCGCCGCCCGTAAGCAGTCCCACCCTC-CCCCCTGATCCGCCCCGCTCGCCTC
CCCGCGGCCCGGGTCTCCGCGCTTGGGCCGGCCAGAT--------------CGCGCCCCCCGATTCGGATCTGCCGCCCG
ATTC-------CTCGTCCCGGCTCGCCGAGCGCCTCCTTGCCCTAGGTCTTTCC--------------------------
--------------------------------------------------------------TGT--------------G
CCGCTGCCGCTGACGGTTTAGTCTAGCCTAGG------------TGTCTTCGTCGGAGTCGGTGCTC-----------CG
GTCCGGTCCTGCCTCCGCG--TGCTGGCGGGTGGCCGAGCTCCAGATCTCGTAGGTGGCGTGTCCCTGCCCAAAAGGGGT
AAAGGGGAGGGTTGGGGATG------TTTTTGTTTTCT-CCAATGCATCGAGTAGATTCAAGTTGCCATTTCTGCAGTTC
CGCTAGTCGCTCTCATTCATTCCTTGTTTGAGCAGCCTTATTGTGACATACCTGGTTGCTTATTTGCTGTCACGAATTTA
CACATAAATCTGACTTGTAAACCTCTACCTGCGGATAGATTTGTCAGGGATTCCATCCTTGCTTGAGAAGATAGCGCCGC
ATCTGCCTAGTCTTGCTTTGGTAATCCTGTGCCTGTACATTGATAGATTTGTCAGCGATTCGATCCTTGCTTGGGAATAT
AGCTGCACATCTGGCTAGTCTTGCTGTTACCGCACGTCTGGCCGTCGAAATACGCTGCAATTTTACAAGCTGTTGGTTGC
TCTGCGTTGTTGAGTTGCTGATGACCATAACCATTTGATCCGTTGCAGCTCGTCGTTGGTGGTTCCTGGCGCGTGAGTGA
CGCCCAGCCGGCATGGCGGCCAACGTGGGGGAGTCCACGAGCGGGA---GCAGCAGCGTGGCCGGCGACGGCGGGGGCAG
CTTCGAGTGCAACATATGCTTCGAGCTGCCGCAGGAGCCCATCGTCACGCTCTGCGGCCACCTCTTCTGCTGGCCCTGCC
TCTACAAGTGGCTGCACATCCACTCGCACTCCCCCGAGTGCCCCGTCTGCAAGGCCGTCGTCGAGGAGGACAAGCTCGTC
CCGCTCTATGGCCGCGGCAAGGACCGCGTCGACCCCAGGTCCAAGGGCGTGCCGTCCGGGGCCGAGATCCCCAACCGGCC
GACCGGGCAGCGGCCTGCCACCGCCCCGCAGGCCGACCCCAACAACCACTTCCCCAACGCCAACCCTAACCCCTGGTTCA
TGGGTGGAGGGGGCGTCCCTTTGGCCAACGCGCGGTGGGGGAACTACACCTTCTCGGCCGCGTTTGGCGGCCTGTTCCCG
CTGCTGAGCTTCCAGGTGCATGGATTCCCGGACGCGACCGCGTACGGGCAGCCTGCCGGGTTTCCCTATGGGTACGGACA
TGGCCACGGCCACGGCCACGGGCATGCTTTCCATGGTGGGAACGCCCACGCCGCCGGCCCCCGGCACGCGCCGCCCGGGC
AGCAGCAGCAGCAG------GCGGACGTGTACCTCAAGGCGCTGCTCATCCTGGTCGGCTTCCTCGTGATCGCAAGCCTC
ATCACATTCTAGGTTTGTCGGCTCCCACTATTGTCATTTGTCACCGTCATAATAAGAGAAAC---GATTGTCGTGATACT
TGTCAGATGTTGTGTGCATTACCTT-GGCCCCCCATAC-AAAGCCCTGGTCTAGATCTGAGTGGTGCGTTTTGAGCGAAA
GTGTTCATAGAACTCCTGTATATATGTGCTATTTAGACGCGGTCCTG-TGGGGGGCGCC-TGTGTACCGTAGTGGTTTCG
CGCTGATTCGCGAGTGATTT-GGAAACCTCTGTTTGGGGTGGATGTACCAGACCAATTATATATCATGTGTAATTTTGAT
TCGACTGTCC-AACTGAGTGGGGTGT------------------------------------------------------
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>chr5B_175
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-----------------------------GCCGCCGGTAAGCAGTCCCACCCTG-CCCCCTGATCCGCCCCCCGCGCCTC
CTCGCGGCCCTCGTCTCTGCGCTTGGGCCGGCCAGATCGCGGCCGGCTCGGCGCGCCTCCCGATTCGGATCCGCCCGATC
CCTCGGCCTCGGTCGTCGCGGCTCGCCGGGCGTCTGCTTGCGCGGGGCCCGTCCGCGCCGGATTCGGCCGCCGGGCTCGC
TCGGTGTGCGGGCTTGCGGGGAGAGGAGCTTCTCGCCCCAGGCGTCGCACGGGCTCGCCCGTTGT--------------G
CGGCTGCTGCTCACGATTTAGTCTAGCACTGCTGCTGCTGCCGCTGTCGTCGTCGGAGTCGCTGCGCTGTCGGTGCTGCG
GTCCCGTCTTGTGCGTTGCTTTGCTGGTGTGTGGCCGAGCTTCAGATCTCGTAG--------------------------
-----GGAGGGTTGGGGATGATTTTGTTTTTGTTTTTT-CCAATGCTTCTACTAGATTCGCGTTGCTCCTCCT-------
-GCTAGTCGCTCTCATTCATTCCTTGTTTGAGC----------------------TTGCTTATT-GCTGACACGA-----
----GAAATCTTACTC-TAATCCTGTACCTGTAGATAGATTTTTCAGGGATTCGATCCTTCCTTGAGAAGATA-------
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-GCTGCACATCTGGCTAGTCTTGCTGTTACCGCACGTCTGGCTGTCGAGATACGCTGCAATTTTACAAGCTGTTGGTTGC
TATGTGTTGTTGAGTTGCTGATGACCATAACCATTTGATCATTTGCAGCTCGTCGTGGGTGGTTGGTTCCGAGCGAGCGA
CGCCCAGCCAGCATGGCGGCAAATGTGGGGGAGTCCACGAGCGGCA---GCAGCAGCGTGGCCGGCGACGGCGGGGGCAG
CTTCGAGTGCAACATATGCTTTGAGCTGCCGCAGGAGCCCATCGTCACGCTCTGCGGCCACCTCTTCTGCTGGCCCTGCC
TCTACAAGTGGCTGCACATCCACTCGCACTCGCCCGAGTGCCCCGTCTGCAAGGCCGTCGTCGAGGAGGACAAGCTCGTC
CCGCTCTACGGCCGCGGCAAGGACCGCGTCGACCCCAGGTCCAAGGGGGTGCCGGCCGGGGCCGAGATCCCCAACCGGCC
GACCGGGCAGCGGCCCGCCACCGCCCCGCAGGCCGACCCCAACAACCACTTCCCCAACGCAAACCCTAACCCCTGGTTCA
TGGGGGGAGGGGGCGTCCCTTTGGCCAACGCGCGGTGGGGAAACTACACCTTCTCGGCCGCGTTTGGCGGCCTGTTCCCG
CTGCTGAGCTTCCAGGTGCATGGATTCCCGGACGCGACCGCGTACGGGCAGCCTGCCGGGTTTCCCTATGGCTACGGGCA
TGGCCAT------GGCCATGGGCATGCTTTCCATGGCGGGCACGCCCACGCCGCTGCCCCCCGGCACGCGCCGCCCGGGC
AGCAGCAGCAGCAG------GCGGACGTGTACCTCAAGGCGCTCCTCATCCTGGTTGGCTTTCTCGTGATCGCGAGCCTC
ATCACATTCTAGGTTCGTC-------ACCATTGTCATTTGTCACCGTCATAATAAGAGAAAC---GATTGTCATGATACT
TCTCAGATGTTGTGTGCATTACCTT-GCCCCCCCGTACGAAAGCCCCGGTCTAAATCTGAGTGGTGCGTTTTGAGCGAAA
GTGTTCATAGAACTCATGTATATATGTGCTATTTAGACGCGGTCTGAATGGGGGGTGCC-TGTGTACCGTAGTAGTTTCA
CACTGATTCGTGAATGATTT-GGAAACCTCTGTTTGGAGTGGATGTACCAGACCAAT--TATATCATGTGTAATTTTGTT
TCGACTGTCA-AAGTGAGTGGGGTGTC----CAGCTATTTGGAGTCCATGTCTTGTCTTCCTCTTCTGTACTGTATTGTT
AAGATGCTTTGCGATGATGGCTGTAACTCTCTCATGTCAGTGTTCATGTTAGAATACTGA---ATTCATATCTTCTTTTT
TCTC---------AATTTTGGTTTGACTGTAAAAATGAGTGC-GGTATGCAGTGATTTAGAATCCAT-------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
------------S--S-SSSSS--------------------S--------S----S---S-SSS---------------
------------------------------------------------------S-------------------------
---------------------------------------------S-------S-----------------------S-S
------------------------------------------------------S--S--SSSSSSS-------------
---------------------SSSS--------S----S--SSS----S--SSSSSS-SSSS--SSSSSSSSSSSSSSS-
----S--------------------------S-------------S---S-SSS--------------------------
------------------------------------------------------S--S-------------S--------
-----------------S-------------S-----SS-------S---------------------------------
----------------------------------S-------S-----S----------------------------S--
-----------------------------S--------------S------------S------S-S--------S--S-
-----S----S---S--------SS---------------S--------------------------------SS--S--
----------------------S--S---SS-SS---S-S---S-S-----S-----------SSS-SSSSS--------
------------------------S----S-------------------------S--------------------S---
S---------------------------------------------SSS-------------S-----------------
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---------------------S-----------S--S-----------------S--S--S-------------------
--------------------S-------------------------------------------S---------------
------------------------------------S----------------------------------------S--
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--------------SSSSSS------------------------------------------------------------
---------------------S----------------------------------------SSS---------------
-------------------------S-------------------------------S----------------------
-------------------------------------------------------SSS-S--------------------
------------S-------S-----------------------------------------------------------
----------S---------------SSSSS-----------------------S----------------SS-------
--S-----------S--------------SS-----------------------------SSS----S--S-------S-
SSSSSSSSSSSSS-----------------S----------SS---S---S-SS-------S--S--SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_615
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-----------------------------------CGAGCTCCAGATCTCGTAGC-------------------------
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>reverse_2544
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---------------------------------------------------------------ATCAGTCATGTTGACGC
GGT-----------------------------------------------------------------------------
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