>input_sequence_70911
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---------------------------------ATGGCGATTCTTGAAGCCACGCTCGTT---CTCCTCCTCCTCCTGGT
AGCACCGGCGGCCGGCTCCGACGACGCGCTCGCCGCGTCCTGCTCCGGCGCGCGCAGCTTCGCCGCCGACAGCCCCTTCG
CCAGCAGCCTGCGCCAGCTGATGTCGCTCCTCGAGACCAAGGCCCCGGCCATCGGGTTCGACATCGGCAGCTCCGGCGGC
GTGCACGGCCTGGCGCTCTGCCGCGGGGACGTCGCCAGGGCGACATGCGCCGAGTGCATCCGCTCCGCGGGCGCCCAGGC
CCAGCGCCTCTGCTCGTCCAAGAAGGACGCCGTCGTCTGGCTCGACGCCTGCATGCTCCGCTACTCCGACGGGCACTTCT
TCGGCGAGGTCGACGCCGACCACAGCGCCGTCGTGCCGGGCGGCGTCCTGGGCGCGGCGAGGTCGGCCGAGTTCGACAAC
GAGGTCGCCGGCATGATGAAGAGGCTCACCAGGACGGCGTACCTCTCGCCGCTGCTGTTCGCCGCCGGGGCGGCCGAGGC
GGTCGCCGGGACGCGGAGACTGCACGGGCTCGCCCAGTGCACCAAGGACCTGTCCGGTGGGGACTGCAAGCTGTGCCTAG
AGGCCGCCATTGGTAAGCTGCTGGCGAGAGGGTGCGCCAAGGAGGGAGGGATGGTGTTAGGCGGAAGCTGCAGTTTGAGA
TACGATCTGTATCCCATTTTTGATTCCTAG--------------------------------------------------
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---------
>chr4D_1_TraesCS4D01G349300
TCACCTCTGTGGTATCTTTCTCGCATCCTCAACTTGTCAAGTACCCCCGTGATGTGCTCGGTAGTGCCGGAATCTACATA
CCAATTTGTGTCAATGCCATAGGAGTCAATGCCACATGAAGAAGTGAGACAGATACAAAGAGGGGTGATCAACATTGATC
CATCAGGACCACATGACACTTGGACGTGCATTTGGGGAGATGCCAAATTTAAAACCATAAAATATTATAAATTCTACTTC
AGAGATATAGTTGCTCATGATGCCTTCAACTGGTTATGGAAATCCAAAAGTATGCTCAACATCAAAGTTTTTGGCTGGTT
CTTACTGGCTGACCGACTCAATATCAGGAACATGCTCAGAAGAAGACACTACAATACTGGAAACAATCTAGACTACCTGC
TATGTGGATACACTGGCCTTTCCTACCTTTTCCATTGTCGAAAAAAGATTACATGAAGAATATTTCTCAAACTCTATTAC
AGAGGAGCAGAGTTGTGCTCTCCCCGCGACTGTCGCGTGCTCGGATGGCCGGAGCCAAGCTCGAGGTTTGCTAGGCGGAT
GTCCAGACTCCGTCAAAGCCTCCAGGTTTGCTATCACTTT----------------------------------------
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---------------------GCCGGTTCGAACGTCTGAAAGCGTCCACGAAACGGTTGAGGATAGCACTCAATTGGAAA
GAA---AAAATGTCTAGACTCCCGAAAACATGACATACACCAGTCTCTGTCCGGCCGGGTCAGCGTCAGCGTTGGCGGGT
CGCTCTCGCACGACTTCTCTTGATTGGCGGCTTGCCCAGTCCCGGCCGCGGATCGGGTAGCGGCGGCGCATGCGACCTCG
TCCAGGAAGCGCCTAG----CCTACCTACCATGGTCCAGCGCCAGCCCCAACCTACTCCACGCGTCCAACGATTTAGACC
ACGCCGGTC-----GCCTTGGTGCTTCTTCCCTTCCTTCGCTCACGGCCACACTTGTTTATATATCGACACCGTGCAAGT
GTGCAACCAACTTGCTCCACTCACCGACCGGCCATGGCGATTCTTGAAGCCACGCTCGTT---CTCCTCCTCCTCCTGGT
AGCACCGGCGGCCGGCTCCGACGACGCGCTCGCCGCGTCCTGCTCCGGCGCGCGCAGCTTCGCCGCCGACAGCCCCTTCG
CCAGCAGCCTGCGCCAGCTGATGTCGCTCCTCGAGACCAAGGCCCCGGCCATCGGGTTCGACATCGGCAGCTCCGGCGGC
GTGCACGGCCTGGCGCTCTGCCGCGGGGACGTCGCCAGGGCGACATGCGCCGAGTGCATCCGCTCCGCGGGCGCCCAGGC
CCAGCGCCTCTGCTCGTCCAAGAAGGACGCCGTCGTCTGGCTCGACGCCTGCATGCTCCGCTACTCCGACGGGCACTTCT
TCGGCGAGGTCGACGCCGACCACAGCGCCGTCGTGCCGGGCGGCGTCCTGGGCGCGGCGAGGTCGGCCGAGTTCGACAAC
GAGGTCGCCGGCATGATGAAGAGGCTCACCAGGACGGCGTACCTCTCGCCGCTGCTGTTCGCCGCCGGGGCGGCCGAGGC
GGTCGCCGGGACGCGGAGACTGCACGGGCTCGCCCAGTGCACCAAGGACCTGTCCGGTGGGGACTGCAAGCTGTGCCTAG
AGGCCGCCATTGGTAAGCTGCTGGCGAGAGGGTGCGCCAAGGAGGGAGGGATGGTGTTAGGCGGAAGCTGCAGTTTGAGA
TACGATCTGTATCCCATTTTTGATTCCTAGCTAGGTGGCGCTACCTTTAATTTGTTCTTGTAATTAAGGTGTCAGACTCT
TATACCCACATGCATTGTTCATACAGATTCTCATGAATATGTTCAGATACAAGAAACTTCAGTT----------------
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----TATGTTTGTAAATAAAACAAGGGTGGGAACTAGGAATACTATCTGCCGAATATAAATCACTTTGACATTCTTTGCT
TTCATGCGATTGGTCGTTAAATTTAACACTCTCTCCGATTAATATTAATTGTTGCTGTTTTAATACAGTACAACTTTAGG
ATCGGAAGGAGTAGTAGA-TATTATACAGGGAATAAAACTATTGCATTTTTTTC-----TCTTTCTATTTTGCATTTACG
ACCATTGAATTCAAACAGCTAATCTTTGTTCAACCGTTGATTGAATTCAG------------------------------
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----------------------------------------------------------ATTTTAAATTTTGTTGTAAGGT
AGAGTACATCTTGTGCCAACCCTCGAACAATTCTAATGAATTTTTCAACTTTTTGATATGCTCACATTTATGATATGTTT
----CACCAAGTGGATGAAGTGTGGTGAACATACTTTGAGCAATTCAATTTTGCGTTAATACTTCACACAAAAGAAAAAG
TTTGCTTCATTCAACATTTGTTAGTTTATTTTCTGCATGAATGAAAAATAGTTGATGGTGCCTTCAAATC----------
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---------------TACTCCCTATGTTCCCTAATATAAGACC-TTTAGC------------------------------
-----------------------------TTTTTC---------------------------------------------
-----------TATGTAGTCAATGTTTTGAAATAGCTAAATGTTCTTATAGTAAAGAACGGAGGGAGTAACAAATTAATT
GGTTTCCATCATAAAAGAGTGGCAGTATATAGCCATATCATGGTTGTTGACAACTTGACATGGTGGCATGCATAAAAGGT
TCTGTTTTGGAATAATTTAGAAAAGGGCAAAAAAAGGCAAGTAAATAAATAGTAAAAGTTAATTTTCTTTGAAAGAGCTC
TGAGAGCATCTACAACCGCACCTACCTAGTTTGGGTCCTCAAACATGCGTGAATGTACCCTGTCAATGCTCAGGCGCGTT
CGTTTTGAT
>chr5A_419
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------------------TTTCCTACCGTTTCCATCGTCGAAAAAAGATTACATGAAGAATATTTCTCAAACTCTAACAC
AGAGGAGCAGAGTTGTGCTCT-CCCGCGACTGTCGCGTGCTCGAATGGCCGGAGCCAAGCTCGAGGTTTGCTAGGCGGAT
GTCGAGATTCCGGCAAAGCCTCCAGGTTTGCTATCACTTCACGGATCCGGCTTGCCTGTTCCCTTCCCATGCTCCCATCC
GTGCTCCCACCTCATCCAACGGTTGTATTTTTTCCTTTTTTTTCTTTCTAATCTAATCATCTCCCCCTGATTTTAAGGGG
GTGAGGCCGGACTTTATTTTGTTTCAATCAAATGAAGCCACGTATGCGAGAATACGGATGGGCACACGGGAGGAAAGCAT
GCAAGTCTCGTCCATCGCTTCGCCCGTTCGAACGTCTGAAAGCGTCCACGAAACGGTTGGGGACAGCACTCAATTGGAAA
GAA---AAAATGTCTAGACTCCCGAAAAAATGGCATACACCAGTCTCTGTCCGGCCGGGTCAGCGTCAGCGTTGGCGGGT
CGCTCTCGCACGACTTCTCTTGATTGGCGGCTTGCCCAGTCCGGGCCGCGGATCGAGTAGCGGCGGCCCATGCGACCTCG
TCCAGGAAGCGCCCAGCCTACCC----ACCATGGTCCGGCTCCAGCCCCAA-CCACTCCACGCGTCCAACGTTTTAGACC
ACGCCGGTCCGGTCGCCTTGGTGCTTCTTCCCTTCCTTCGCTCACGGCCACACTTGTTTATATATCGACACCGTGCAAGT
GTGCAACCAACTTGCTCCACTCATCGGCCGGCCATGGCGATTCTTGAAGCCACGCTCGCTCTCCTCCTCCTCCTCCTTGT
AGCACCGGCGGCCGGCTCCGACCACGCGCTCGCCGCGTCCTGCTCCGGCGCGGGCAGCTTCGCCGCCGACAGCCCCTTCG
CCAGCAGCCTGCGCCAGCTGATGTCGCTCCTCGAGACCAAGGCCCCGGGCATCGGGTTCGACATCGGCAGCTCCGGGGGC
GTGCACGGCCTGGCGCTCTGCCGCGGCGACGTCGCCAGGGCGACGTGCGCCGAGTGCATCCGCGCCGCGGGCGCCCAGGC
CCGGCGCCTCTGCTCGTCCAAGAAGGACGCCGTCGTCTGGCTCGACGCCTGCATGCTCCGCTACTCCGACGGGCACTTCT
TCGGCGAGGTCGACGCCGACCACAGTGCCGTCGTGCCGGGCGGCGTCCAGGGCGCGGCGAGGTCGGACGAGTTCGATAAC
GAGGTCGCCGGCATGATGAAGAGGCTCACGAGGACGGCGTACCTCTCGCCGCTGCTGTTCGCCGCCGGGGCGGCCGAGGC
GGTCGCCGGGACGCGGAGACTGCACGGGCTGGCCCAGTGCACCAAGGACCTGTCCGGTGGGGACTGCAAGCTGTGCCTGG
AAGCCGCCATTGGTAAGCTGCTGGCGAGAGGGTGCGCCAAGGAGGGAGGGATGGTGTTAGGCGGAAGCTGCAGTTTGAGA
TACGATTTGTATCCCATTTTTGATTCCTAGCTAGGTGGCGGTACCTTTAATTTGTTGTTGTAATTAAGGTGTCAGACTCT
TATGCCCACATGCATTGTTCATACAGATTCTCATGAATATATTCAGATACAAGAAACTTCAGTTTCGAATATCCAATTCT
GATTCCGGGCTCATCTGCACCCGGTCAAGAAATAATTCATTAAAAATCAAAAAATCAAAAAAAAATCAAATTTTTTGTGC
ATGGTAGGTAATTTGGTGCGTGAGATGCGCTCTGTATTTCAGAGCATTTGGACATTTGAATAGCTCTCAGCAAAAAAGAC
AAATTTGATTGAAACAATATATGAATAGTACACTAGTTAACAGACCTCAAATTTGTCCTTTTTTCGAGATATCCTTAGAT
GTTCAAATGATTTGAAATTTGGACCGAACATCACGCACCAAATTATATACCATGCCAAAAAAATTGAATTTTTTAAAAAA
AATTCTAGTATTTGTTTTGATTTTTTTTTTATTCAGCGCAGGTGTAGATGCTTCTGGGAGGCAAAACGCCTCACTCCTTG
AGTTTATGTTTGTAAATAAAACAAGGGTGGGAACTAGGAATACTGCCTACC----------------GACATTCTTTGCT
TTCATGCGATTGGTCGTTAAATTTAATACTCCCTCTGATTAATATTAATTGTCGCTGTTTTAATACAACTTTTGTATAGG
------GGGAGTAGTAGA-TATTATACAGAGAATAAAACCATTGCAATTTTTTTCTCTTTCTATCTATTGTGCATTTACG
ACCATTGAATT-AAGCAGCTAACCTTTGTTCAATGGTAGATTGAATTCCCATTTGAAATTTTGTTGTAAGGTAGAGTACA
TCTTGTGCCAACCCTCGGACAATTCTAATGAATTTACAACTTTTTGATATGCTCAATTTTTTTCTCTTTCTATCTATTGT
GCATTTACGACCATTGAATTAAGCAGCTAACCTTTGTTCAATGGTAGATTGAATTCCCATTTGAAATTTTGTTGTAAGGT
AGAGTACATCTTGTGCCAACCCTCGGACAATTCTAATGAATTTA-CAACTTTTTGATATGCTCCCATTATGATAC-GTTT
CCTCCACCAAGTGGATGAAGTGTGGTGAACATACTTTGAGCAATTCAATTTTGCGTTAATACTTCACACAAAAGAAAAAG
TTTGCTCCATTCAACATTTTTCAGTTTATTTTCTGCATGAATAAAAAATAGTTGACGGTGTCTTCGAATCTACTCTCTCC
GTTCGGAATTACTTATCTCGGAAATGGATGTATCTAGAACTAAAACACATCTAGATACATCCATTTCCGCGACAAATAAT
TCCGAACGGAGAGAGTACTCCCTATGTTCCCTAATATAAGACTTTTTAGC------------------------------
-----------------------------TTTTTCTTAATTCATATGTATCTAGACACATTTTAGTGTATACATTCACTC
ATTTTAGTATGTATGTAGTCAATGTTTTGAAATAGCTAAAAGTTCATATA------------------------------
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>chr4B_545
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----------------------------------------------------------------GGTTGGCTAGCCGGAT
GTC---ATTCCGGCAAAGCCTTCAAGTTTGCGATCACTTT----------------------------------------
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---------------------GGCGGTTCGAACGGCCGAACGCGTCCACG-AACGGTTGAGGATAGCATTCAATTGGAAG
AGAAAGAAAATGTCTAGACTCCCGAGAAAAAGACATACACCAGTCTCTGTCCGGCCGGGTCAGCGTCAGCGTTGGCGGGT
CGCTCTCGCACGACTTCTCTTGATTGGCGGCTTGCCCAGTCCCGGCCGCGGATCGAGTAGCGGCGGCGCATGCGACCTCG
TCCAGGAAGCGCCCAGCCTACCTACCTACCATGGCCCGGCTCCAGCCCCAA-CTACTCCACGCGTCCAACGTTTTAGACC
ACCCCGGTCCGGTCGCCTTGGTGCTTCTTCCCTTCCTTCGCTCACGGCCACACTAGTTTATATATCGACGCCGTGCAAGT
GTGCAACCAACTCGCTCCACTCACCCACCGGCCATGGCGATTCTTGAAGCCACGCTCGTT---CTCCTCCTCCTCCTTGT
AGCACCGGCGGCCGGCTCCGACGACGCGCTCGCCGCGTCCTGCTCCGGCGCGCGCAGCTTCGCCGCCGACAGCCCCTTCG
CCAGCAGCCTGCGCCAGCTGTTCTCGCTCCTCGAGACCAAGGCCCGGGCCATCGGGTTCGACATCGGCAGCTCCGGCGGC
GTGCACGGCCTGGCGCTCTGCCGCGGGGACGTCGCCAGGGCGACGTGCGCCGAGTGCATCCGCTCCGCGGGCGCCCAGGC
CCGGCGCCTCTGCTCGTCCAAGAAGGACGCCGTCGTCTGGCTCGACGCCTGCATGCTCCGCTACTCCGACGGGCACTTCT
TCGGCGAGGTCGACGCCGGCCACAGCGCCGTGGTGCCGGGCGGCGTCCTGGGCGCGGCGAGGTCGGCCGAGTTCGACAAC
GAGGTCGCCGGCATGATGAAGAGGCTCACGAGGACGGCGTACCTCTCGCCGCTGCTGTTCGCCGCCGGGGCGGCCGAGGC
GGTCGCCGGGACGCGGAGACTGCACGGGCTCGCCCAGTGCACCAAGGACCTGTCCGGTGGGGACTGCAAGCTGTGTCTAG
AGGCCGCCATTAGTAAGCTGCTGGCCAGAGGGTGCGCCAAGGAGGGAGGGATGGTGTTAGGCGGAAGCTGCAGTTTGAGA
TACGATCTGTATCCCATTTTTGATTCCTAGCTTGGTGGCGGTACCTCTAATTTGTTGTTGTAATTAAGGTGTCAGACTCT
TATACCCACATGCATTGTTCATACAGATTCTCATGAATATATTCAGATACAAGAAACTTCAGTTATGTTTG---------
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--------------------------------------------------------TAAATCCCTTTCACATTCTTTGCT
TTCACGTGATTGGTCATTAA--------------------------AATTGCCGCTGCTTTAATACAACTTTAATAGTAC
TCGGGAGGGAGTAGTAGAGTATTATACAGAGAATAAAACCATTGCTTTTTTTTTCAA----TTTCTATGGTGTATTTACT
ACCATTGAATT-AAACAGCTAACCTTTGTTCAACGGTTGATTGAAATCCGATTTGAAATTTTGTTGTAAGGTAGAGTACA
TCTTGTGCAAACCCTCG---------------------------------------------------------------
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-------------------------AACAATTCTAACGAATTTA-CAACTTTCTTATATGCTCCCATTTATGATATGTTT
CCTCCACCAAGTGGATGAAGTGTGGTGAACATACTTTGAACAATTCAGTTTTGCGTTAATACTTCACACAAAAGAAAAAG
TTTGCTTCATTCAACATTTTTTAGTTTATTTTCTGCATGAATAAAAAATTGTTGATGGTGTCTTCGAATCTACCCCTCCG
TTCCCTA-------------------------------------------------------------------------
---------ACATAATACTCTCTCTGTAAACTAATATAAGAGCATTTAGATTACTAAAATAGTGATCTAAACACTCTTAT
ATTAGTTTACGGAGGGAGTACCTTTTATGTTTTTCTTAATTCGCATGTATCTAGACACATATTAGTATGTATGTTCAATC
ATTTTAGTAT--ATGTAGTTAAAGTTTTGAAATAGCTAAAAGTTCTTATAGTAAAGAACGGATGGAGTAACAAATTGATT
GGTTTCTATTATAAAAGAGTGGCAGTATATAGCAATATCATGGTTGTTGACAACTTGCCATGGTGGCACGCATAAAAGGT
TCAGTTTTCGAATAATT-------GGGCAAAAAAAAGTTAGTATACAAAAAGTAAAAGTTAATTTTCTTTGAAAGAGCTC
TGAGAGCATCTACAACCGCACCTACTTAGTTTGGGTCCTCAAACGTCCGTGGACGTGCCCTGTTAGTGCTTGGGCGCGTC
CGTTTTGAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS---------S-------S----------------------------------------SS--
---------------------S---------------------S------------------------------------
---S---S----S-------------------------------------------------------------------
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----------------------------S---------------------------------------------------
-------------------------------------------------------S------------------------
-------------S-----------------------S--S----------S-------------------S--------
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-----------------------------------------------------------------------------S--
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--------------------------------------------S-----------------------------------
--S-----------------------------------------------------------------------------
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-----------------------------S--------------------------------------------------
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----------------------------------------S---------------S-----------------------
----------------------------------------S---------------------------------------
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--------------------------------------------SS--S--SSSSS------S-----------------
--------------------------S----S---S----------------S--------------SSSSS-S-S----
SSS---S----------------------S---------S-------------S---------------S----------
-----------S----------S-----------S-------------S-------------------------------
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--------------------------------------------------------------S-----------------
-------------------------------------------SS------------------S----------------
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-------------------S----------------------S-----------------S----S--------------
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----------------------------------------S---------------------S-------------S---
------S--S-----------------------S-----------------------S----------S-----------
--S-----S--------SSSSSSS-----------S-SS----S-S---S------------------------------
-------------------------S------------------S-S----S-S--S------S-S----SS-------S
---------
>forward_331
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-----------------------------------------------------------------------TGGCTGGTT
CTTACTGGCTG---------------------------------------------------------------------
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>reverse_1710
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-----------------------------CAGGACGGCGTACCTCTC---------------------------------
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>forward_1278
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----------------------------------------------------------TCGTTCTCCTCCTCCTCCTG--
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>reverse_3751
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----------------------------------------------------------------------CAGGCGCGTT
CGTTTTGAT
