>input_sequence_70909
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--------ATGC----AATCGATCTTCCAACACCTCACATGTTCATCTGCCATCTTCGACACGTACACAAGACGGAATCC
TTCTCAGGCAATGGCTTCCTTCTCCTGTTCCTCTAGT------------AGCGTGATGAGCGTGATTTTGCTGCTCTTCT
CCGTCCTCCTTGCGGCTGCCGAGGCACCTGCGCCTGCGCGGTCGGCCAGCGACCAGATCATACTTGCCGCATGCAAGACC
GTCGGCGGCGGGAGCACCTACTTCGACGTCACGTTCTGCCTGGGTGCCCTCGGCTCCGCCGGCAGCGCCGCCGGCTACCA
AGACCTCGCCGCCGTCGCCGTGGACCTCCTCGCGACCAACGCCACCAGCACGGAGGCCAAGATCGATCGCCTGCTCGGTG
GCAGCGGCGTGAAGGTCAAGCCGGGTGACGCCGCCCTGGCGCGGTGCCTCCGGTGGTGCCGGTCGCTGTACGGCGGCATA
GTGGACGACGGGCCTGCGTCCACCGCCGCGGTCAAGGGCGGGAGGTTCGGAGAGGCGACAGCGATCCTGGAGAAGGCCGC
GGCCGCGGCGAAGGAGTGCGAGGGCGGGTTCGAGAAGAGCAAAGCGGCTTCGCCGCTGACGGCGGAGGACGACGACGCGT
TCAAGCTCGCAAAGCTCGCCGTCGCGTTGCTCCGTTTTGACGAGAAA---------------------------------
----------------------TTGGATA------TTTCGCCCCGCTTTACTTCTTCATTTGATCATTCGCCTTCCTGA-
--------------------------------------------------------------------------------
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------------------------------------------
>chr4D_1_TraesCS4D01G127200
CTAGCATACAAAAATGCCCTAAGACACAACATATCAGGGAGACGTGTATAGGAACAACATTCCTATTCTCGCGCTCTCAA
AAGAAGAAATAATCAAAGGAGCTCGTAGAGGTCTACTCGCCCTTATTAAGTAAACGCATTGGTGAGAGCT--TTTTTTTT
TGC-----AAAGTTAATGGACTGCCATGTGTCTCATGCCTAGAAATTCCATATTGCAGGAGACATCCTTTCGTCAAGGAT
TACATCCATCCACATGATTGCTTCTGGACCACAG--TCGCTTTCTATGGCCCGATTTATAGGAAAAGCCCCACGCTATG-
TTACTTGCGTTCTACTTTTATTCCTTTTTCGTAAGAAATAGACAGACAAGAAATGTCGCGGCCCGCTCATAATTGTACCC
CTTTGGTTGGCATC----------------CACCTATTTTTCGAGTCTCATTATTACCACCTCTGAAGCACTTC--TTGT
GTATACAATTGCATGCATAGTATTCTGTTTCATACTCGATTTGCAGGCCGGAAAATTTGCTCAAATCACAACAAAGGAAA
ACGAATATAGCCATTTGTAGGTAGTAGAGTGAGGAGCAATAATGTGTGTCGTCACATGCAACGTGATGAGATGGATACAC
-----ACACCGATGATGAAACTTGGAAAGGCTAGCTATCGCTGAC---AAGTCCATTGCTTGCTGCGGTGGCTCACTGGC
TAGTTATGTTGGTCTAAAAGAAGCTTAAAAGGAAAGGGCCACTATGGCACGATAGCGTGACTCATTTGCACCGGCGCGTA
GTAGTTTGGCAGTTCCTCTTCTGTGGTGCTAGGCTGCTAGCCACGTGGATGACAATTTTCTA---TGGCTTTTCCCGACG
GTCTGAAGTGCCATTTCTCTGAACTACCGGG-CAGTTTTAATGTCGTA-----AT-------------------------
--------------------------------------------------------GTAAATCCAAAAGTACACATGATA
TCAGTATGAGCATGAAGAACACTCCACGATACTCGTGTGATGAGCGTGGTGGCCAAATACAGA-ATCAAGTCGAAAAA-T
AAAAATATATGC----AATCGATCTTCCAACACCTCACATGTTCATCTGCCATCTTCGACACGTACACAAGACGGAATCC
TTCTCAGGCAATGGCTTCCTTCTCCTGTTCCTCTAGT------------AGCGTGATGAGCGTGATTTTGCTGCTCTTCT
CCGTCCTCCTTGCGGCTGCCGAGGCACCTGCGCCTGCGCGGTCGGCCAGCGACCAGATCATACTTGCCGCATGCAAGACC
GTCGGCGGCGGGAGCACCTACTTCGACGTCACGTTCTGCCTGGGTGCCCTCGGCTCCGCCGGCAGCGCCGCCGGCTACCA
AGACCTCGCCGCCGTCGCCGTGGACCTCCTCGCGACCAACGCCACCAGCACGGAGGCCAAGATCGATCGCCTGCTCGGTG
GCAGCGGCGTGAAGGTCAAGCCGGGTGACGCCGCCCTGGCGCGGTGCCTCCGGTGGTGCCGGTCGCTGTACGGCGGCATA
GTGGACGACGGGCCTGCGTCCACCGCCGCGGTCAAGGGCGGGAGGTTCGGAGAGGCGACAGCGATCCTGGAGAAGGCCGC
GGCCGCGGCGAAGGAGTGCGAGGGCGGGTTCGAGAAGAGCAAAGCGGCTTCGCCGCTGACGGCGGAGGACGACGACGCGT
TCAAGCTCGCAAAGCTCGCCGTCGCGTTGCTCCGTTTTGACGAGAAA---------------------------------
----------------------TTGGATA------TTTCGCCCCGCTTTACTTCTTCATTTGATCATTCGCCTTCCTGAG
AGGCTATCGGATGGGGCCCGGAGCCATTATCATTGAGACAATCAAAGGACAAGTCATCCAACGCCTTGAAAAATAGGGCA
AATCATCCAACTTCTTGATTAGTTGTTCTATTTGTAACCGTGCCATGTGATCTGTGATCTGCGTTGTTGGTTAGATCATG
TACTGATGATCCTACGTGTTATCTGCTGTCGGGCAGTCAGGGTGAAAATGTGAATTAAGGACTGCGGACCCTCTGGCAAT
CGTCCGAACGATTTGCCATCAGTCTGCTCGACGGACGTCACTTTTAAGCAATGAGGGACTTTACGGGCGTTCAGACCGAT
GCCACGCAAGCATCCAAGAACCCTGGTGTCGGTGTCAAAACCGGCGGATCTTGGTTAGGGGGTCCCGAACTGTGCGTTTA
AGGCGGATGATAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTCGGGCCCTCTCGATGGAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAATCCTATAAGCTAG
CCTATGATTATGATTGTTGTTGTCCTACGGACTAAACCTTCCGGTTTATATAGACACCGGAGGGGGCTAGGGTTACACAG
AGTCGGTTACAAAGGAGGAGATCTACATATCCTTACTGCCAAGCTTGCCTTCCACGCAAAGGAGAGTCCCATCCGGACAC
GGGACGAAGTCTTGAGTCTTGTATCTTCATAGTCCAACAGTCCGGCTAAAGTATATAGTCCGGCTATCCGAGGACCCCCT
AATCCAGGACTCCCTCAGTAGCCACTGAACCAGGCTTCAATGACGATGAGTCCGGCGCGTAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATTTT-T-GAACACAAGGATCGTGTCCGGCTCTGCAAAATAAATTCC
ACATACCGCCGTAGAGAGTATAATATTC-CACAAATCTAATC
>chr4B_3
--AGTATACAAAAATGCCCTAAGACACAACATATTAGGGAGACGTGTGTAGGAACAACATTCTTATTCTCGCGCTCTCAA
ACGAAGAAATAATCGGAGGAGCTCGTAGAGGTCTACTCACTCTTATTAAGCAAAAGCATTGGTGAGAGCA--TTTTTTTT
CTGTTGCAAAAGTTAATGGACTGTCATGTGTGTCATGCCTATAAATTTCATATTGTAGGAGACATCCTT-CGTCAAGGAT
TACATCCATCCACGTGGTCGTTTCTGGACCACAG--TCTCTCTCTATGGCCCGATTTGTAGGAAAAGACCCATGCCATGT
TTGCTTGTGTCTTACTTTCATTCCCTTTTCATAAGAAATAGATGGACAAGAAATGCCA---CCCGCTCATAATTGCCCCC
CTTTGGTTGGCATCTTGCCTCCATTATCATCACCTATTTTGCGAGTCTCATTATTACCACCTCTTGGAGCACTTCTTTGT
GTGTACACTTGCATGCATAGTATTCTGTCTCGTACTCGATTTGCAGGCCGGAATAGTTCCTCAAATCACAAGAAAGGAAA
ACGAATATAGCTATTCGTGGGTGGTAGAGTGAGGAGCAACAATGTGTGTGGTCACATGCAACGTGATGAGATGGATACAC
-----ACACCGACGATGAAACTTAGAAAGGCTAGCTGTAGCTGAC---AGGTCCATTGCTTGCTGTGATGGCTCACTGGT
TAGTTATGTTTGTCTC-AAAATGCTTAAAAGGAAAA--CCACTATGGCAAGATAGCGTGACTCATTTGCATCGACGCGTA
GTCGTTTGGCAGTTCCTCTTCTGTGGTGCTAGGCTCCTAGCCACGTGTTGAACAAGTTTCTT---TGGC-TTTCCCGACG
GTTTGAAGTACCATTTCTCTGAAATACCGGGGCAATTTTAAGGCCGATCGTAGAT-------------------------
--------------------------------------------------------GTAAATCCAAAAGTACACACGATA
TCAGTACGAGCATGAAGAACACTCCATGATACTCGCGTGATGAGCGTGGTGGCCAAATACAGATATCAAATCGA-AAAGT
AAAAATATATGCAATTAATCAATCTTCCAACACCTCACATGTTCATCTGCCATCTTCCACACATACACAAGACGGAATCC
TTCTCAGGCAATGGCTTCCTTCTCCTGTTCCTCCTCTAGTAGTGTGATGAGCGTGATGGGCGTGATCTTGCTGCTCTTCT
CCGTCCTCCTTGCGGCTGCCGAAGCACCTGTGCCTGCGCGGTCGGCCAGCGACCAGATGATACTTGCCGCATGCAAGACC
GTCGGCGGCGGGAGCACCTACTTCGACGTCACGTTCTGCCTGGGTGCCCTCGGCTCCGCGGGCGGCGCCGGCGGCTACCA
AGACCTCGCCGCCGTCGCCGTGGACCTCCTCGCGACCAACGCCACCAGCACGGAGGCCAAGATCGACCGCCTGCTCGGTG
GCAGCGGCGTGGAGGTCAAGGCGGATGACGCCGCCCTGGCGCGGTGCCTCCGGTCGTGCCAGTCGCTGTACGGCGGCATA
GTGGACGACGGGCCTGCGTGCACCGCCGCGGTCAATGGCGGGAGGTTCGGCGAGGCGACAGCGATCCTGGAGAAGGCCGC
GGCCGCGGCCAAGGAGTGCGAGGGCGGGTTCGAGAAGAGCAGCGCGGCTTCGCCGCTGACGGCGGAGGACGACGACGCGT
TCAAGCTCGCAAAGCTCGCCGTCGCGTTGCTCCGTTTTGCTTCAGAGCCCGGAAACGGACATTGCTGCTACTGATGTTTC
GAATTTTTTTTTTGTTCTTTTCTTTTTTTGAGTATTTTCGTATATTGCATA---------------------ATAAC---
--------------------------------------------------------------------------------
----------ATTCTTGATTAGTTGTTCTATTTGTAACCGTGCCTTGGAACTG---------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>chr4A_3
--AGCATACAAAAATGCCCTTAAAAACAAGATATCAGGGAGATGTGTGTAGGCACAACATACTTATTCTCGCGCTCTCAA
AAGAAGAAATAATCAAAGGAGCTCGTAGAGGTCTACTCACCTTTATTAAGCAAACACATTGGTGAGAGCAATTTTTTTTT
TTTTTGCAAAAGTTAATGGGCTGCCATGTATCCTATGCCTATAAATTTCATATAGTAGGAGACACCA-----TCAAGGAT
TACATCCATCCACATGGTTGCTTCTGGACCACAGTCTCTCTCTCTATGGCCTAGTTTGTAGGAAAAGCCCCACGCCACG-
TTGCTTGTGTCTTACTTCCATTCCCTTTTGGTAAGAAATAGACGGACAAGAAATGTTGCGGCCCGCTCACAATTGCACCT
CTTTGGTTGGCATCTTGCCTCGATTATCATCACCTATTTTTCGAGTCTCATTATTACCACCTCTCGGAGCATTTCTTTGT
GTATACACTTACATGCATAGTATTCTGTCTCATACTCGATTTGCAGGCCGGAATATCTCCTCAAATCACAAGAAAGGAAA
ACGAATATAGCCATTTGTGGGTGGTAGAGTGAGGAGCAACAATGTGCGTCGTCACATGCAACGCGATGAGATGGATACAC
TACACACACCGATGATGAAACTTGGAAAGGCTAGCTATAGCTGACTACAGGTCCATTGCTTGCTGCGATGGCTCACTGGT
TAGTTATGTTGGTCTAAAAGAAGCTTGAAAGGAAAGGGCCACTATGGCAAGATAGCGTGACTCA------CCGACGCGTA
GTAGTTTGGCAGTTCCTCTTCTGTGGTGCTAGGCTGCTAGCCACGTGTTGGGCAAGTGATCTCTTTGGCTTTTCCCGACG
GTCAGAAGTGCCATTTCTCTGAAATACCGGGGCAGTTTTAAGGCCGATCGTAATGTATTCCCTCCGTAAACTAATATAAG
AGCGTTTAGAATACTAAAATAGTGATTTAAACATTCTTATATTAGTTTACAGAGGAGTAAATCCAAAAGTACACATGGTT
TCAGTATGAGCGTGAAGAACACTCCATGATACTCGCGTGGTGAGCGTGGTGGTCAAATACAGA-ATCAAATCGA-AAA-T
AAAAATATATGC----AATCAATCTTCCAACACCTCACATCTTCATCTGCCATCTTCGACACATACACAAGACGGAATCC
CTCTCAGGCAATGGCTTCCTTCTCCTGCTCCTCTAGT------------AGCGTGATGGGCGTGATCTTGCTGCTCTTCT
CCGTCCTCCTTGC------------------GCCTGCGCGGTCGGCCAGCGACCAGATGATACTTGCCGCATGCAAGACC
GTCGGCGGCGGGAGCACCTACTTCGACGTCACGTTCTGCTTGGAGGCCCTCGGCTCCGCGGGCGGCTCCGGCGGCTACCA
AGACCTCGCGGCCGTCGCCGTGGACCTCCTCGCGACCAACGCCACCAGCACGGAGGCCAAGATCGACCGCCTGCTCGGGT
GCGGCGGCGTGGAGGTCAAGGCGGATGACGCCGCCCTGGCGCGGTGCCTCCGGTCGTGCCAGTCGCTGTACGGCGGCATA
GTGGACGACGGGCCTGCGTGCACCGCCGCGGTCAAGGGCGGGAGGTTCGGCGAGGCGACAGCGATCCTGGAGAAAGCCGC
GGCCGCGGCGAAGGAGTGCGAGGGTGGGTTCGAGAAGAGGAGAGCGGCTTCGCCGCTGACGGCGGAGGACGACGACGCGT
TCAAGCTCGCAAAACTCGCCGTCGCGTTGCTCCGTTTTGCTTGAGAGCCCGGAAACGGACATTGCTGCTACCGATGTTTC
GA-----TTTTTTTTTCTTTTCTTGAATA------TTTCGTATATTGCATACCTTTTCTTTAGGGTAGCATAATAAT---
--------------------------------------------------------------------------------
----------CTTCTTGATTAGTTGTTCTATTTATAACCGTGTCATGTGATCTGTGATCTGCGTTGTTGGTTAGATCATG
TACCGATGATCCTACGTGTCGTCTGTTGTCAAACAGTCAGGGCGAAAATGTGAATTGAGGACTGCAGACCCTCTCGCAAT
AGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------
>chr3D_2057
--------------------------------------------------------------------------------
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---------------------CCTGTTGTCGGTGTCAAAACCGGCGGATCTCGGGTAGGGGGTCCCGAACTGTGCGTCTA
AGGCGGATGGTAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTCGGGCCCTCTCGATGGAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGCTAG
CCTATGATTATGATTGTTGTTGTCCTACGGACTAAACCCTCGGGTTTATATAGACACCAGAGGGGGCTAGGGTTACAGAG
AGTCGGTTACAAGGGAGGAGATCTACATATCCGTATTGCCAAGCTTGCCTTCCACGCAAAGGAGAGTCCCATCCGGACAC
GGGACGAAGTCTTCAATCTTGTATCTTCATAGTCCAACAGTCCGGCCAAAGTACATAGTCCAGCTGTCCGAGGACCCCCT
AATCCAGGACTCCCTCAGTAGCCCCTGAACCAGGCTTCAATGACGATGAGTCCGGCGTGCAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATTTT---GAACACAAGGATAGTGTCCGGCTCTGCAAAATAAATTCC
ACATACCACCGTAGAGAGTATAATATTC-CACAAATCTAATC
>chr3D_2060
--------------------------------------------------------------------------------
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------------------------GGTGTCGGAGTCAAAACCGGCGGATCTCGGGTAGGGGGTCCCGAATTGTGCGTCTA
AGATGGATGGTAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTCGGGCCCTCTCGATGTAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGCTAG
CCTATGATTATGATTGTTGTTGTCCTACGGATTAAACCCTTCGGTTTATATAGACACCGGAGGGGGCTAGGGTTACACAG
AGTCGGTTACAAGGGAGGAGATCTACATATCTGTATTGCCAAGCTTGCCTTCCACGCAAAGGAGAGTCCCATCCGGACAC
GGGACGAAGTCTTGAGTCTTGTATCTTCATAGTCCAACAGTCCGGCTAAAGTATATAATCCGGCTGTCCGAGGACCCCCT
AATCCAGGACTCCCTCAGTAGCCCCTGAACCAGGCTTCAATGACGATGAGTCCGGCGCGCAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATT-T-T-GAACACAAGGATCGTGTCCGGCTCTGTAAAATAAATTCC
ACATACCGCCGTAGAGAGTATAATATTC-CACAAATCTAATC
>chr5D_2061
--------------------------------------------------------------------------------
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-------------------------GTGTCGGTGTCAAAACCGGCGGATCTCGGGTAGGGGGTCCCGAACTGTGCGTCTA
AGGCGGATGGTAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTCGGGCCCTCTCGATGGAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGATAG
CCTATGATTATGATTGTTGTTGTCCTACGGACTAAACCCTCCGGTTTATATAGACACCGGAGGGGGCTAGGGTTACACAG
AGTCGGTTACAAGGGAGGACATCTACATATCCGAATTGCCAAACTTGCCTTCCACGCAAAGGAGAGTCCCATCCGGACAC
GGGACAAAGTCTTCAATCTTGTATCTTCATGGTCCAACAGTCCGGCCAAAGTATATAGTCCGGCTATCCGAGGACCCCCT
AATCCAGGACTCCCTGAGTAGCCCCTGAACCAGGCTTCAATGACGATGAGTCCGGCGCGCAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATT-T-T-GAACACAAGGATCGTGTCCGGCTCTGCAAAAAAAATTCC
ACATACCACCGTAGAGAGTATAATATTC-CACAAATCTAATC
>chr7D_2061
--------------------------------------------------------------------------------
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-------------------------GTGTCGGTGTCAAAACCGGCGGATCTTGGGTAGGGG-TCCCGAACTGTGCGTCTA
AGGCAGATGGTAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTCGGGCCCTCTCGATGGAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGCTAG
CCTATGGTTATGATTGTTGTTGTCCTACGGACTAAACCCTCCGGTTTATATAGACACCGGAGGGGGCTAGGGTTACACAG
AGTCGGTTACAAGGGAGGAGATCTACATATCCGTATTGCCAAGCTTGCCTTCCATGCAAAGGAGAGTCCCATCCGGACAC
GGGACGAAGTCTTCAATCTTGTATCTTCATAGTCCAACAGTCCGGCCAAAGTATATAGTCCGGCAGTCCGAGGACCCCCT
AATCCAGGACTCCCTCAGTAGCCCCTGAACCAGGCTTCAATGACGATGAGTCCGGCGCGCAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATTCTCCATAGAAGATT-T-T-GAACACTAGGATCGTGTCCGGCTCTGCAAAATAAATTCC
ACATACCACCGTAGAGAGTATAATATTC-CACAAATCTAATC
>chr2D_2061
--------------------------------------------------------------------------------
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-------------------------GTGTCGGTGTCAAAACCGGCGGATCTTGGGTAGGGGGTCCCGAACTGTGCGTCTA
AGGCGGATGGTAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTCGGGCCCTCTCGATAGAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGCTAG
CCTATGATTATGATTGTTCTTGTCCTACGGACTAAACCCTTCGGTTTATATAGACACCGGAGGGGGCTAGGGTTACACAG
AGTCAGTTACAAGGGAGGAGATCTACATATCCGTATTGCCAAGCTTGCCTTCCACGCAAAGGAGAGTCCCATCCGGACAC
GGGACGAAGTCTTGAGTCTTGTATCTTCATAGTCCAACAGTCCGGCTAAAGTATATAGTCCGGCTGTCCGAGGACCCCCT
AATCCAGGACTCCCTCAGTACCCCCTGAACCAGGCTTCAATGACGATGAGTCCGGCGCGCAGATTGTTTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATT-T-T-GAACACAAGGATCATGTCCGGCTCTGTAAAATAAATTCC
ACATACCACTGTAGAGAGTATAATATTTTCACAAATCTAATC
>chr4D_2062
--------------------------------------------------------------------------------
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--------------------------TGTCGGTGTCAAAACCGGCGGATCTCGGGTAGGGGGTCCCGAAATGTGCGTTTA
AGGCGGATGGTAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTTGGGCCCTCTCGATGGAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGCTAG
CCTATGATTATGATTGTTGTTGTCCTACGGACTAAACCCTCCGGTTTATATAGACACGGGAGGGGGCTAGGGTTACACAA
AGTCGGTTACAAGGGAGGAGATCTACATATCCGTATTGCCAAGCTTGCCTTCCACGCAAAGGAGATTCCCATCCGGACAT
GGGACGAAGTCTTGAGTCTTGTATCTTCATAGTCCAATAGTCCGGCTAAAGTATATAGTCCGGCTGTCCGAGGACCCCCT
AATCCAGGACTCCCTTAGTAGCCCCTGAACCAGGCTTCAATGATGATGAGTCCGGCGCGCAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATT-T-TTGAACAGAAGGATCGTGTCCGGCTCTGCAAAATAAATTCC
ACATACCGCCGTAGAGAGTATAATATTC-CACAAATCTAATC
>chr5D_2062
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------TGTCGGTGTCAAAACCGGCGGATCTCGGGTAGGGGGTCCCGAACTGTGCGTCTA
AGGCGGATGGTAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTCGGGCCCTCTCGATGGAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGCTAG
CCTATGATTATGATTGTTCTTGTCCTACGGACTAAACCCTCCGGTTTATATAGACACCGGAGGGGGCTAGGGTTACACAT
AGTCGGTTACAAGGGAGGAGATCTACATATCCGTATTGCCAAGCTTGCCTTCCACGCAAAGGAGAGTCCCATCCGGACAC
GGGACGAAGTCTTGAGTCTTGTATCTTCATAGTCCAACAGTCCGGCTAAAGTATATAGTCCGGCTGTCCGAGGACCCCCT
AATCCAGGACTCCCTCAGTAGCCCCTGAACCAGGCTTCAATGACGACGAGTCCGGCGCGCAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATT-T-T-GAACACAAGGATCGCGTCCGGCTCTGTAAAATAAATTTC
ACATACCACCGTAGAGAGTATAATATTTTCACAAATCTAATC
>chr5D_2062
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------TGTCGGTGTCAAAACCGGCGGATCTCGGGTAGGGGGTCCCGAACTGTGCGTCTA
AGGCGGATGGTAACAGGAGGCGGGGGACACAATGTTTACCCAGGTTC-GGCCCTCTCGATGGAGGTAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGCTAG
CCTATGATTATGATTGTTGTTGTCCTACGGACTAAACCCTCCGGTTTATATAGACACCGGAGGGGGCTAGGGTTACACAG
AGTCGGTTACAAGGGAGGAGATCTACATATCCGTATTGCCAAGCTTGCCTTCCACGCAAAGGAGAGTCTCATCCGGACAC
GGGACAAAGTCTTGAGTCTTGTATCTTCATAGTCCAACAGTCCGGCTAAAGTATATAATCCGGCTGACTGAGGACCCCAT
AACCCAGGACTCCCTCAGTAGCCCCTGAACCAGGCTTCAATGACGATGAGTCCGGTGCGCAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATT-T-T-GAACACAAGGATCGTGTCCGGCTCTGTAAAATAAATTCC
ACATACCGCCGTAGAGAGTATAATATTC-CACAAATCTAATC
>chr3D_2062
--------------------------------------------------------------------------------
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--------------------------TGTCGGTGTCAAAACCGGCGGATCTCAGGTAGGGGGTCCCGAACTGTGCGTCTA
AGGCGGATGGTAATAGGAGGCGGGGGACACAATGTTTACCCAGGTTCGGGCCCTCTCGATGGAGGGAATACCCTACTTCC
TGCTTGATTGATCTTGATGATATGAGTATTACAAGAGTTGATCTACCACGAGATCGTAGAGGCTAAACCCTAGAAGCTAG
CCTATGATTATGATTGTTGTTGTCCTACGGACTAAACCCTCCGGTTTATATAGACACCTGAGGGGGCTAGGGTTACACAG
AGTCGGTTACAAGGGAGGAGATCTACAGATCCGAATTGCCAAGCTTGCCTTCCACGCCAAGGAGAGTCCTATCCGGACAC
GGGACGAAGTCTTGAGTCTTGTATCTTCATAGTCCAACAGTCCGGCTAAAGTATATAGTCCGGCTATCCGAGGACCCCCT
AATCCAGGACTCCCTCAGTAGCCCCTGAACCAGGCTCCAATGACGATGAGTCCGGCGCGCAGATTGTCTTCGGCATTGCA
AGGCGGGTTCCTCCTCCGAATACTCCATAGAAGATT-TTT-GAACACAAGGATCGTGTCCGGCTCTGCAAAATAAATTCC
ACATACCGCCATAGAGAGTATAGTATTC-CACAAATCTAATC
>SNPs
SS---------------------------------------------S--------------S-----------------
--------------------------------------S-----------S------------------S----------
-SS--------------------------------------S-----S-------S-------------S----------
----------------S---------------------S--S---------------S-----------------S----
--S----S--SS------S-----S------------------S-------------------------------S----
----------------------------------------------------------------SSSSSSS--S------
-------S--------------------S------------------------S----S------------S--------
------------------S---S----------------S----------------------------------------
--------------------------------------S----------S-----------------S-----------S
-------------------------------------------------S-----------------------S------
-----------------------------------------------SSS-----S-----S------------------
-----------------------S-----------------S-S--SS--------------------------------
--------------------------------------------------------------------------------
--------------------------S--------S---------------------------------S----S-----
--------------------S-----------------------------------------S-----------------
----------------------------------------------------------S-------S-------------
----------------------S-------S---------------------------S---------------------
-----------------------------------------------------------S---S------S---------
------------------------------------------------------------------S-------------
-----------S--------S---S-----------------------------S-----S-------------------
-------------------S------------------------------S-----------------------------
-----------------------------------------S--------------------------------------
---------------------------------------SSSSSS-S---------------------------------
-------------------------S--------------SSSSSSSSSSSSSS--SS---SSSSSSS-SSSS-SS-SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS----------------------------------------------------------------------
---S---------------SS----S----SSS---------S-------------S--------S--------S-----
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------------------------------S-------------------------
---------S----------------------------------------------------------------------
-------------------------------------------------------------------S----S-------
--------------------------------------S-----------------------------------------
------------S-------------------S--S--------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-----------------------------------S--------------------
--------------------------------------------------------------------------------
------------------------------------------
>forward_328
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------CCCCACGCTATG
TTACTTGC------------------------------------------------------------------------
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>reverse_2216
--------------------------------------------------------------------------------
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-------------------------------------------------------GGACTTTACGGGCGTTCAGA-----
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------------------------------------------
