>input_sequence_70903
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---------------------CGTTAAAAAGC---------------AGCCTCGGCTCCTCCGCGCACCCGAA-----CC
GAGCCTCG----CCACCATGATCTCCCCGCGCCCCACTCTCTCCTCC---------GGCTTCTTCTCCCGCTCCGCCTCC
TTCTCCCGCCCCGGCTCATTCTCCCC---------CTCGCCGCCCGCCTCGCCGGCCGCGCAGCCTCCGCCGCGGCTGCT
CTCGGCCCCGCTCGCGCGCCAGGCCACCTTCTCCTGCTCCGCCT------------CCGCCGTCGCCGCGCCGGGCCGCG
GCGCCTCCTCCTGCTTCTACGACGTGCTCGGCCTGGACGCCGGCGCGAGCGACGGGGAGATCAAGGCCGCGTACCGCCGC
CTGGCGCGCGCCGTCCACCCGGACGTGTCCCCGCACC---------CCGCCGACGACTTCATACGCGTGCACGCCGCCTA
CAGCACGCTCTCCGACCCCAGCAAGCGCGCCGACTACGACCGCCGCATGATCATGATCCCCTCCGCCGTCGCCCGCCGCA
GCGCCCCGAACCTCGCCCGCTCGCCGTCGTTCCCCGGGTGCCGCCGCCGCACCTGGGAGACCGACCAGTGCTGGTGATCG
ACCGCCCGCCGTCCGCCCCGACCAGCGC-TCACGCAGGTCCCTGACGCTTTCGGCCGGAGTGGCCTCCGGCTGGTTCCCC
GGGCGGTTAGAAATGCAAAGGTTACCGCGGCCACTAGGCTCACTTGCAGTGGTGGCCGGGTCACTACGCTTCTAGTAGA-
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>chr4A_1_TraesCS4A01G069100
TAGATCCGCCCGGCCGCTGGTCACCGCGCGCCAGATCTGCGTGCACCGCCCCCTCAAGTCTCCGTCGCGGCCATGCGCGA
CGAAGCCGCCCCTTGACTCTGCTAGCCCGACGACGCAGCCCCTTGCCGCTGCTAGCCCGACGACACCGTCCCTTGTCGCC
GCTAGCCCGACGACGCCTCCGCTCGGCTGAGCAGCCCCGCGCCGCTCGAGCGCCTCGCGAGAGGGAGAACCAGGCCCCGC
CGCCGCCGACGCCGCGCGGGCTTTGCCCGGCGACGCCCTCCGGCGGCGGCGAGGGAGGGGAGGGGTGGGGTGGGAGTGTT
GGGCGGCGGCGCCTAGGGTTTCTCCCGAGCCGCCCGCGGGGAGCGACACGGGAGAGTCTGGTTAATTCTGCCTTACGGTT
TTTGTCAAACTTGATGTATGATGACATACTCCTCAGATAAGGGTTACGGGAACGAACGGGTAAAACTGACAGCGACTTAT
GCTTTTCTCAAGTTCCCAACATTGATATTTCAACTTTCTACAGAAACTTAATACTATTACAACTTGACATTTCTTTAATA
GTACAAAGTGTGTACAGATGTCGGCCCTTACGTTACG-TGACATGTACCTGCAGCCAGCAGCCGGAACTATTTGTGTAGT
ACGTATGTCCCTGTCACTATGAATCATGCCTGCAAACTAAATCGGCACCGTGAACGACTGCTTCAAACGAAACTCGTCAC
AGTTGCAGACTTGAGATTCGCGTTAACCCAATCACGAGGTGTTGATGGCAACAAAAATCAACTCGTCGGCCA--------
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--------------------------------GAGGCACATGACCGCATCCCGCCAAATCCGAAATAAGCCCCT-CGAGT
TGCGCTGCGGC----CAGCCAATGGGAGCAGCC------CAGGGAGAATCGTTGACGAAACAACGCGCAGCCAAAGGG--
-------ACGCAACGCGAGCCACGCCCGGCGTTAACGAATAGCCAAAGCCAACCCCCCTCAAATGCCTCGTCTGATTGGC
GATTGCCTCCTCGTCCGCCAGCGTTAAAAAGC---------------AGCCTCGGCTCCTCCGCGCACCCGAA-----CC
GAGCCTCG----CCACCATGATCTCCCCGCGCCCCACTCTCTCCTCC---------GGCTTCTTCTCCCGCTCCGCCTCC
TTCTCCCGCCCCGGCTCATTCTCCCC---------CTCGCCGCCCGCCTCGCCGGCCGCGCAGCCTCCGCCGCGGCTGCT
CTCGGCCCCGCTCGCGCGCCAGGCCACCTTCTCCTGCTCCGCCT------------CCGCCGTCGCCGCGCCGGGCCGCG
GCGCCTCCTCCTGCTTCTACGACGTGCTCGGCCTGGACGCCGGCGCGAGCGACGGGGAGATCAAGGCCGCGTACCGCCGC
CTGGCGCGCGCCGTCCACCCGGACGTGTCCCCGCACC---------CCGCCGACGACTTCATACGCGTGCACGCCGCCTA
CAGCACGCTCTCCGACCCCAGCAAGCGCGCCGACTACGACCGCCGCATGATCATGATCCCCTCCGCCGTCGCCCGCCGCA
GCGCCCCGAACCTCGCCCGCTCGCCGTCGTTCCCCGGGTGCCGCCGCCGCACCTGGGAGACCGACCAGTGCTGGTGATCG
ACCGCCCGCCGTCCGCCCCGACCAGCGC-TCACGCAGGTCCCTGACGCTTTCGGCCGGAGTGGCCTCCGGCTGGTTCCCC
GGGCGGTTAGAAATGCAAAGGTTACCGCGGCCACTAGGCTCACTTGCAGTGGTGGCCGGGTCACTACGCTTCTAGTAGAA
TAAACAGT--------GTACTCTGTTATTAGCACAACGTACAATTAGTCTCACACTTCGCTGTGGCTTGTATATGTATAT
ATAGAAAAACAAAAGATGGATGTATGGCGTCGTGTGCGACGTCCGTCTATTTTGAAGTCTACTGTATTATGCATGTTCGG
CTTGACGTGGTGATCTGACAGTAGGATTTGTTAAATCGTAATGAGCTGGACTCCTGGAGATGCTGAGGGCCGGATGGTGA
TCTTGGCTTACTTTTCTTCTCGCGTGCGTGGTGGCTGCTGCGGACCTGGGGGGCTGCGGCTTGTGGAGTCTGAATGCTTC
AAAGCGCTCCCTGTTTTCTTCGAGAGAAAGGAACTGCTGGTGC-GAATCATCCAGTGGCAAGACTCCAAGTCGTCGCAAG
AGCCGAGAGGGACTTGAATGAATATATGCTTTGCTCTAATTTGGTTTCCATCGTTCGCCACTCCAGGAGGACAGAATCTT
AGCTACTATCGCTGTCCGTCATGAAAATTTACCA--------CTAAAATGCTCTGCAGAACTAGAGCATCTACAGCCGGG
CAGATCAATCCGGCCAAACGCTCGGATAGACGGATCATTCAAAAAACAAAAAATATCGACCCATAAACACCCGGACTGTT
CGGCATCCCTCATATCAAGCCCAAATCTAGGACGGATATGAGGCGGCCGGAGCGCTCGGGTGAGTCCGCCACATCGAACG
AGCCTAGACTGGCCCACACTCGCCCCCCACAAATATCTTCTTCTCAAGAATCTTAAAGCCCTAGACCGAAGTCCAATCCA
TTAGTCCACTTCACTCTCTTCTCTGTCCGCTCCACTTCGAGTCCCCTCCGATTCCGATCGATGGCCGGCAAAGGTAGCAA
CGTCGGCACCAGTGGCAGCTCAGGTGGCTCCGGCGACTGGTTGAGCCTGTTGTGCGATGCAGAGCCCGACGATGTGGAGG
AGGTTGCCCTCTGCATTGCTTTGAGGCGTTCGCTGCTCGAACAAGGCAGCGGCAGC
>chr4B_390
GCCTTAAGG-----------------------------------------------------------------------
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-------------------------------------------------------------------------------T
TTTCTCAAACTTCATGTATGATGATG---TACTCAGATAAGGGTACAGGAAATGAACATGTAAAACTGACAGCTAGTTAT
GCTTTTCTCAAGTTCCCAACCTTCATATTTCAACTTTCTACGAAAACTTAATA---TTAGAACTTGATATTTTTTTAGTA
CAAACTG--GTGTACAGATGTCGGCCCTTACGTGACATTGACATGTACATGCAGCCAGCAGCCGGCACTATTTGTGTAC-
---TATGTCGTTGTCACGATGAATCATGCCTGCAAACTAAATCGGCACCGTGAACGACTGCTTCAAATGAAACTCGTCAC
AGTTGCAGACTTGAGATTCGCGCTAACCCAATAACGAGGTGTTGATGGCAACAAAAATCAACTAGTCGACCA--------
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--------------------------------GAGGCACATGACACA-----------------------CCCT-CGAGT
TGCGCTGCACGGCTGCAGCCAATGGCAGAAGCC------CAGGGAGAATCGTTGACGAAACAACGCGCAGCCAAACGGAC
AACCTCAACGCAACGCGAGCCTCGGCCGGCGTTAACGAATAGCCAAAGCCAATCCCCCTCAAATGCCTCGTCTGATTGGT
GATTGCCTCCTCGTCCG---GCGTTAAATAGC---------------AGCCTCGGCTCCTTTGCGCATCCGAACCGAACC
GAGCCTCG----CCACCATGATCTCCCCGCGCCCCACTCTCTCCTCC---------GGTTTCTTCTCCCGCTCCGCCTCC
TTCTCCCGCCCGGCCTCATTCTCCCC---------GTCGCCGCCTGCCTCGCCGGCCGCCCAGGCGCCGCCGCCGCTGCT
CTCGGCCCCGTTCGCCCGCCCCGCCACCTTATCCTG------CT------------CCGCCGTCGCCGCCCCGGGACGCG
GCGCCTCCTCCTGCTTGTACGACGTGCTCGGCCTCGACGCCGGCGCGAGCGACGGGGAGATCAAGGCCGCGTACCGCCGC
CTGGCGCGCGCCGTCCACCCGGACGTGTCCCCGCACC---------CCGCCGACGACTTCATACGGGTGCACGCCGCCTA
CAGCACGCTCTCCGACCCCAGCAAGCGCGCCGACTACGACCGCCGCATGATCATGATCCCCTCCGCCGTCGGCCGCCGCA
GCGCCCCGAACCTCGCCCGCTCGCCGTCGTTCCCCGGGTGCCGTCGCCGCACCTGGGAGACTGACCAGTGCTGGTGATCG
ACTGCCCACCATCCGCCCCGACTAACGCGTCACGAAGGTCGCTGACGTTTTCGGCCGGAGTGGCCTCCGGCTGGTTTCCC
GGGCGGTTAGAAATGCAAAGGTTACCGCGGCCACTAGGCTCACTTGCAGTGGTGGCCGGGTCACTACGCTTCTAG---AA
TAAACT---GTAGTACGTACTCTGTTGTTAGCGCAACGTACAATTAGTCTCACGCTTCGCTCTGGCTTGTA--------T
ATAGAAAAACAAAAGATCAATGTATGG---CGTGTGTGACGTCCGTCTATTTTGAAGTCTATC-----ATGCATGTTCGG
CTTGATGTGGTGATCTGACAGTAGGATTTGTTAAATCATAATGAGCTGGACTCCTGGAGATGCTGAGGGCCGGATGGTGA
TCTTGGCGTACTTTTCTTCTCGCGTGCCTGGTGGCTGGTGCGGACCTGGGGGGCTGCGGTCTGTGGAGTCTGAATGCTTC
AAAGCACTCCCGGTTTTCTTTGAGAGAAAGGAACTGCTGGTGCTGAATCATCCACTGGCAAGACTCCAAGTCGTCGCAAG
AGCCGAGAGGGACTTGAATGAATAGATGCTTTGCTCCAATTTGGTTTCGTTCGTTCGTGACTACAGGACGGCAGAATC-T
AGCTACTGTCGCTGTCCGTCATGAAGATGTACCTAAATCTAGCTACAATGTTTGGCAGAACTAGAGCATCTACAGCAAGG
CAGCTCAAAACGGCCAGACGCTCGGGCAGACGCATCGGT-------CAAAAAATATCGACCCACAAACGCCCGGACTGTC
CGGCACCCCGTATATCAAGCCCAAATCTTGAACGGATATGAGGCGGCCCGAGCGCTCGGGTGAGTCCACCACATCCGATT
AGCCTAGCCTGGCCCACCCTCGCCCCC-ACAAATATCCTCATCCGGAGAATCTTAGAGGTCTAGACCGAAGTCCAATCTG
TTAGTCCACTCCACTCCCTTCTCCGTCCACTCCACTTCGAGTTCCCTTCGATTCTGTTCGATGGCCAGCGACGATAGCAA
CATCGACACCAGTGGCAGATCGAGTGGCTCCGACGACTGGCCGAGCCTGTTGTGCGATGCAGAGCCCGACGATGTGGAGG
AGGTTGCCCTCCGCATTGCTTTGAGGCGTTTGCTGCTCGAACAAGG----------
>chr4B_658
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------------------ATGAATCATGCCTGCAAATTG-ATCGGTAATGTGAATGACTGTTTCAAATGAAAGTCGTCAC
AATTGCAGTCTTGAGATTCGTGCTAACCCAATAACAAGGTGTTAATGGCAACAAAAATCAACTCGTTGGCCA--------
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--------------------------------GAGGCACATGACCGCATTCCGCCAAATGA--------CCCCC-CGAGT
TGCGCTGCAGC----CAACCAATGGGAGCAACC------CAGGGAGAATCATTGACGAAACAATGTGCAGCCAAAGGGAT
AACCACAACAG---GCGAGCCTCAT--GGCGTTAATGAATAGCCA------ATCCCCCTCAAATGCCTCATCTGATTAGT
GATTGCCTCCTCGTCTG---ATGTTAAAAGCTGCTGGCACACCTTAGAGCCTGGGCTCCTCTGCTCACC-----TTAACT
CAGCCCTCACCACCACCATGATCTCCCCGTGCCCCACTCTCTCCTTCCACTCCTCTGGCTTCTTCTCCCGCTCCGCCTCC
TTCTCCCGTCCGGCCTCATTCTCCCCGAGGCCCATGTCGCCGCCTGCCTTGCCGGCCGGCCAGGCACCGCCGCCGGTGCT
CTCGGCCCAATTCGCCCACCCCGCCACCTTATCCCGCTCCGCCTTCTTCTCCACATCTGACGTCGCTGTGCTGGTCCGCG
ACGCCTCCTCCTGCTTCTACGAGGTGCTAGGCCTGGACGCCGGTGCGAGCGACGGGGAGATCAAGGCCGCGTACCACTGT
CTAGCTCGCGCTGTCCACCCGAACGTGTCCCTGCACCCTGCCACATCCGCCGACGACTTTATACGGGTGCACGCCGCCTA
TAGCATGCTCTCCAACCCCAGCAAGCGCAACGACTATGACCGCCGCATGATCATGATCCCCTCTGCCGTCGGCTGCCGCA
GCGGCCCGAACCTCGCCCGCTCGCCATCGTTCACCGGGTGCCGCCGCCGCACCTGGGAGACCGACCAGTGCTGGTGATAA
ACCGCCTGTCGTCCGCCCCGAGTAACGCGTCATGCAGGCCCCT-------------------------------------
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>chr4D_665
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-------------------------ATGCCTGCAAACTAAATCGGCACCGTGAACGACTGCTTCAAATGAAACTCGTCAC
AGTTGCAGACTTGAGATTCGCGCTAACCCAATAACGAGGTGTTGATGCCAACAAAAATCAACTACTACCACTCTCTCAGT
TTACAGGGCATGCGCGTATTCCTAGGTCGTTAATTTGACCAATTTAATACAAGTCATATATTACAAAAAATATACAAACA
TAAACTACGGAGTTTCTACTTTCAAAAGATATAATTTTTATGTTATATAGTTTATATTAGAGTGATAAAATTAACAACTT
ATGTATACACACACCACTTGTAAACTGAAACGGAGGCATATGACCGCATTCCGCCAAATGA--------CCCCCTCGAGT
TGCGCTGCAGC----CAA----TGGGAGCAGCCCAGGGACAGGGAGAATCGTTGACGAAACAACGCGCAGCCAAAGGGAC
AACCACAACGCAACGCGAGCCTCGCCCGGCGTTAACGAATAGCCA------ATCCCCCTCAAATGCCTCGTCTGATTGGT
GATTGCCTCCTCGTCCG---GCGTTAAAAAGC---------------AGCCTCGGCTCCTCCGCGCATC-----CGAACC
GAGCCTCG----CCACCATGATCTCCCCGCGCCCCACTCTCTCCTCC---------GGCTTCTTCTCCCGCTCCGCCTCC
TTCTCCCGCCCCGGCTCATTCTCCCC---------CTCGCCGCCTGCCTCGCCGGCCGCGCAGGCGCCGCCGCGGCTGCT
CTCGGCCCCGTTCGCGCGCCACGCCACCTTCTCCCGCTCCGCCT------------CCGCCGTCGCCGCGCCGGGCCGCG
GCGCCTCCTCCTGCTTGTACGACGTGCTCGGCCTCGACGCCGGCGCGAGCGACGGGGAGATCAAGGCCGCGTACCGCCGC
CTGGCGCGCGCCGTCCACCCGGACGTGTCCCCGCACCCCGCCGCGTCCGCCGACGACTTCATACGGGTGCACGCCGCCTA
CAGCACGCTCTCCGACCCCAGCAAGCGCGCCGACTACGACCGCCGCATGATCATGATCCCCTCCGCCGTCGGCCGCCGCA
GCGCCCCCAACCTCGCCCGCTCGCCGTCGTTCCCCGGGTGCTGCCGCCGCACCTGGGAGACCGACCAGTGCTGGTGATC-
-------------------------------------------GACGTTTTCGGCCGGAGTGGCCTCCGGCTGGTTCCCC
GGGCGGTTAGAAATGCAAAGGTTACCGCGGCCACTAGGCTCACTTGCAGTGGTGGCCGGGTCACTGCGCTTCTAG---AA
TAAACAGTAGTAGTACGTACTCTGTTATTAGCGCAACGTACAATTAGTCTCACACTTCGCTGTGGCTTGTATAG------
-----AAAACAAAAGATCGATGTATGGCGTCGTGTGTGACGTCCGTCTATTTTGAAGTTTATC-----ATGCATGTTCGG
CTTGATGTGGTGATCTGACAGTAGGATTTGTTAAATCATAATGAGCTGGACTCCTGGCGATGCTGAGAACCGGATGGTGA
TCTTGGTGTACTTTTCTTCTTGCGTGCGTGGTGGCTGCTGCGGACCTGGGGGGCTGCGGCTTGTGGAGTCTGAATACTTC
AAAGCACTCCCGGTTTTCTTCGAGAGAAAGGAACTGATGGTGCTGAATCATCCAGTGGCAAGACTCCAAGTCGTTGCAAG
AGCCGAAAGGGACGTGAATGAATATACG-TTTGCTCTAATTTGGTTTCCCTCGTTCGCCACTCCAGGAGGACAGAATGTT
AG------------------------------------------------------------------------------
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>SNPs
SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
---S--------S-----------SSSSS-S-------------SSS--S--S----SS--------------S-S----
--------------------S--S-----------------SS----------SSS---S-------S----S----S--
SS-SSSSSS------------------------S--S-----------S----------------S------------SS
SSS------SS------S-------------------------------------------------S------------
----------------------S---------S-----------------------------------------------
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-------------------------------------------------S---------SSSSSSSSSS-----------
--------S-----------------------------------------------------------------------
---------------------S------------------------------S--------------------------S
-----------------SSS------------------------------------------------------------
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--------------------------------------------S------------------S-S--------------
----------S----------S----------------------------------------------------------
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-----------------------------------------------------------------S--------------
-----------------------------------------------------------------------S--------
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----------------------S-S----------------------S--------------------------------
---------------------------------------------------------------------------SSS--
--------------------------------S----------------------------------------SSSSSS-
-----------------S------------------S------------------------SSSSSSS------------
-----S-------------------------------S------------------------------------------
-------S------------------------------------------------------------------------
-----S-----S--------------------------------------------------------------------
-------------------------------------------------S------------------------------
-------S-----------------S--S----S-----------S----S-SS----------------------SS--
---S----SS------S--------SS-----S---SS-SSSSSSS-----------------S----S----------S
-----S---SS-----------------S-S-----------------S------------------S-------SS-SS
-------S---------S---------S---------S--S--SSS---------S--SS------------------SS
----------S-----S------S----S-------------S----S------S-S---------S--S-S-S------
-S---S------------S--SS---------S-------SS--------------------------------------
-----------S------------------S---------------SSSSSSSSSS
>forward_743
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---TGCAGACTTGAGATTCGCGT---------------------------------------------------------
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>reverse_2624
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---------------------------------------------------------------TAAACACCCGGACTGTT
CGG-----------------------------------------------------------------------------
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