>input_sequence_70902
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------------------------------------ATGGAGGCCTCCATGCTCAAGCCCTCGGTGCTGCTCCCTCCGGC
GAGGGGAGGTCCGTCCACGACGCGGGGGCGGGGGCGGGGCTGCGTCGTCGCCGGCACC---------GGCGGCCGCGGCA
GCAAGGTCGGACGGTTGGTTCTTGGTTGCTTACTGTCC-TGGGGAGCGAGCTCCACCCATT-TCTCTCACACGCTGCTTC
TTTTACATTTTTT-GCCAATCGAGCAGAACCTCGAGACACGGCGGGCGGAAGGGA------------------------G
CGAGCCGGCCAGAGGAGCCCACGGCCATGTCCTACCCCT---------GGCGGCGGCGGCCGTGAGCAGCAGCGCCGCCG
CCATGCCGTGCCACGCCGCGACCGCCCCGGCGGCGCACGGGCCATCGCTGTCCTACTACTACAGGGCGGCGGCGGTGCTG
GGGGAGCTGGACCCGGCGACGGCGAAGGTGGTGATCGGGGTGGCGGGGCCGGCGCTGTCGGCGGTGGGGTTCCTGTTCGT
GGCGCGGATCGTCATGTCGTGGTACCCGAGGCTGCCGGTCACCAAGTTCCCCTACGTGGTGGCCTACGCGCCGACGGAGC
CCATCCTCGCCGCCACCCGCCGGGTGATCCCGCCGCTGGGCGGCGTCGACGTCACGCCGGTGGTCTGGTTCGGCCTCGTC
AGCTTCCTCAGCGAGATCCTCGTCGGGCCCCAGGGCCTCCTCGTCCTCCTCTCCCAGCAAGT---------CTCCCCCTC
TTAG----------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G524200
GGAGTCGAGGAGCACCTCGACGGCCTGCGGAATGTATGCCTTTAGTGTGTCGTAGCTGTAGACCATCTGCTCCCTGGAGG
CGGAGGCGCCGACGTTGCCCCCCGTGGCCTCCACCTCCTGCACGATCTGCATGTGGCTCCGGTGCGCCGTGTCCTTGAAC
GCCAGCTTCTCGAGCAGGTGCGTCGCGCCGGCGGACTCGGGCGACTCGTGGATCGAGCCCGACGCCACGAACACCCCCAC
GCACGCCGTGGGACCCTGACAAACCACCA--CACGGAGGCGTCAGCGGAGC---------------------------GC
CATATGGGCTCATCGGAAGGAGG----GGGGGAGGTGGGGGGTACCGGGACGTCCTCGGAGGCGACGCGGACGCCGTTGG
GGAGCGTGGTGATGCGGGTGGGGAGGCGGGCGAGCTGGTCGGGGAGGCAGGGCGGGAGGTCGAGCCCCGGCAGCGGGTGC
AGGAGCGAGGTCGAGCGCGCGGCGGAGGCTGCGCCGGAGAGCCCCCGCGTCATCGTCGGCAGC---------ACTCTTTG
GGCCTCGCCGCGCCCAAGCGGCCGGGACGCCTCGCACAGCTGCAATCAACGCAATCCATCCCAGAAACCGTGAGGCAGGC
AGCAGGGCGACTAAATACAAGCAGAC--GAGAGGCGGGCCGGTGGTCAGTGGGCTCACCTTGCGGAGCAGGCGGGCGGAG
GAGCGGAGCCGGAGCATCGCGGCGGCGGGGCC---GGTGCTGGTGGAGGGAGCCGCCGGCGAGGAGG-GGGAGGAGGAGC
TGCCGTGGAGGAGGGGAAGGGGG------AAGGAATAGTTCGGCTCCGTCTGCTGGGCCGAAGGTAGGGTTTTTTTGGTG
CCCCGCTGGGCTCGGACCGGGCCGTCGTCCACTCGAGGCCCGGTAGAATGAGCCCAGGAGAAGCTGCCGGCCATTCTTCG
TCTC---------TCTTTTTTTTTCCCTGCCTTATCCTCCGAGCAAAGGAA--------GGCCACGAGCCTCCGT---TG
CTTCCCAACGCTCCTCTGTTTTC--CTCTGCCTCTCATGGAGGCCTCCATGCTCAAGCCCTCGGTGCTGCTCCCTCCGGC
GAGGGGAGGTCCGTCCACGACGCGGGGGCGGGGGCGGGGCTGCGTCGTCGCCGGCACC---------GGCGGCCGCGGCA
GCAAGGTCGGACGGTTGGTTCTTGGTTGCTTACTGTCC-TGGGGAGCGAGCTCCACCCATT-TCTCTCACACGCTGCTTC
TTTTACATTTTTT-GCCAATCGAGCAGAACCTCGAGACACGGCGGGCGGAAGGGA------------------------G
CGAGCCGGCCAGAGGAGCCCACGGCCATGTCCTACCCCT---------GGCGGCGGCGGCCGTGAGCAGCAGCGCCGCCG
CCATGCCGTGCCACGCCGCGACCGCCCCGGCGGCGCACGGGCCATCGCTGTCCTACTACTACAGGGCGGCGGCGGTGCTG
GGGGAGCTGGACCCGGCGACGGCGAAGGTGGTGATCGGGGTGGCGGGGCCGGCGCTGTCGGCGGTGGGGTTCCTGTTCGT
GGCGCGGATCGTCATGTCGTGGTACCCGAGGCTGCCGGTCACCAAGTTCCCCTACGTGGTGGCCTACGCGCCGACGGAGC
CCATCCTCGCCGCCACCCGCCGGGTGATCCCGCCGCTGGGCGGCGTCGACGTCACGCCGGTGGTCTGGTTCGGCCTCGTC
AGCTTCCTCAGCGAGATCCTCGTCGGGCCCCAGGGCCTCCTCGTCCTCCTCTCCCAGCAAGT---------CTCCCCCTC
TTAGCTTAGTCATCATCTTTTATACTCTC----------TTGTCAGTG-----TAATATATGAGCTTATTATGGGTGTGG
ACGAA-------TTTTCGACATTCGAAATTTTGCCGAAATTTATCAAAAACAGTCTTTTCAACTCCCACAACGATCCAGA
AAAATTTCTCCCGATGCAAACGAAACAGAGCCTGGAACA-----------------------------------------
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------------------------------------------------------------------------AAAACTTG
----CATATTCACACTCAACT--------------------AATGAAGCATTCCGCTGCTAT-GGAGAAAGATGCACAGG
TTGCAACAATCATCCTTACTTACACGACGAACTGCGAAACCATTCCAAATTTGCTTTAGGTATGAACTCGGCACAAAATC
GACGCTTCTGACT-CCACGAACAGAAGAG--ATCTGAAATCAGCAGGCGACTCAGTCGACACAGAACTAAAACCACACTG
CAAGACAAAGGCGCCATCAGGAAGACGAATTTTGAACTAGTTGATATTTACAAAGGGTACGTGCTTCGCA----CCAGTG
TTTATACAAATAATT-GCTACATGTCGCCGCCATTCGATTCCAGCGGCAAATCTGATCTCAC--TGTGTATTCTGTATGA
GAACAAGAT----TATATATATATACCATGCTATCCTGTTTGGAAAGAATAG-A-----ATTTCCCTTCTACAACCCC--
--TGTATATTGTTCTGCTCTATCTCC---A--------------------------ATAGGCTGCTGCTTCTATTTCGGG
CAGCAAGGTGACTA---TTGTAC-----TGTAAGTCAGTATACAGCTGAGAGTAACTAAAGCCGATCAAAAATTAGGGCG
AC-CGCAACGACTAGTGGTTGATTGAACACAGCTCCCACTTTCCTTCGCCGTCGATGAGTTTCAGTTCCAACGAATGGAA
GGGTATGAGAGCAGGCCTCTGTAAAACAAATAGATAAAAGAAGGCTTCAGCAT--------------CACACAATTTTGC
ATTCAGAAAGACGCGACCACGAGGGGCATAAA-----------GAAACAAAATCCCGTGGGACATGGAAATCAGATCCGA
TGCCCAGCGGTGCTTGTGTTAACTTGCAGAGGCTCAGGAGGATAAACTGAT
>chrUn_1
GGAGTCGAGGAGCACCTCGACGGCCTGCGGAATGTAGGCCTTGAGCGTGTCGTAGCTGTAGACCATCTGCTCCCTGGAGG
CGGAGGCGCCGATGTTGCCCCCCGTGGCCTCCACCTCCTGCACGATCTGCCGGTGGCTCCGGTGCGCCGTGTCCTTGAAC
GCCAGCTTCTCCAGCAGGTGCGTGACGCCGGCGGACTCGGGCGACTCGTGGATCGAGCCCGACGCCACGAACACCCCCAC
GCACGCCGTGGGACCCTGACAAACCACCCCCCACGGAGGCGTCAGCGGAGAGCGACGACGCAGCAGCAGCAGCAGAGGAC
GCTATGAACTCATCAGAAGGAGG----GAAGGGGGC---TGGTACCGGGACGTCCTCGGAGGCGACGCGGACGCCGTTGG
GGAGCGTGGTGACGCGGGTGGGGAGGCGGGGGAGCTGGTCGGGGAGGCAGGGCGGGAGGTCGAGCCCCGGCAGCGGGTGC
AGGAGCGAGGTCGAGCGCGCGGCGGAGGCTGCGCCGGAGAGCCGCCGCGTCATCGTCGGCAGCGGCGGC---ACTCTTGG
GACCTCGCCGCGCCCCAGCGGCCGGGACGCCTCGCACAGCTGCAATTAACGCAATCCATCCCGGCGACCGTGAGGCAGGC
AGCAGGGCGACTAAATACAAGCAGGCGAGAGAGGCGGGCGAGTGGC----GGGCTCACCTTGCGGAGCAGGCGGGCGGAG
GAGCGGAGCCGGAGCATCGCGGCGGCGGGGCCGGTGGTGCTGGTGGAGGGAGCCGCCGGCGAGGAGGAGGGGGGAGAAGC
TGCCGTGGAGGAGGGGAAGGGGAAGGGGAAAGGAATAGTTCGGCTCGGTCTGCTGGGCCGCAGGTAGGGTTTTTTTGGTG
CC----------CGAACCGGGCCGTCGTCCACTGGAGGCCCGGCAGAATGAGCCCAAGAGGAGTTCTCGGCCCTTCCTCT
TCGTCTAGTTTTTTCCTTTTTTTTTTCTGCCTTATCCTCGGAGAGCAGGAAAAGGCCACGGCCACGAGCCGCTGCTGCTG
CTTCCCT-CTCTCCTCTGTTTTTCTCTCTGGCTCTCATGGAGGCCTCCGTGCTCAAGCCGTCGGTGCTGCTCCCTCCGGC
GAGGGGAGCGCCCTCCACGGCGCGGGGGCGGGAGCGGGGCTGCGTCGTCGCCGGCGCC---------GG---------CA
GCAAGGTCGGACGGTTGGTTCTTGGTTGCTTACTGTCCATGGAGAACGAGCGCCATCCATC-TCTCTCTCACGCTGCTTC
TTTTTCATTTCATGTCCAATCGAGCAGAGACTCGAGACACGGCGGCCGGAAGGGAGCAGCAGCGACGGCGCGCCCAGGAG
CGAGCCGGCCAGAGGATTCCACGGGCACGTCCTATCCCTGACGGCAACGGCAGCGGCGGCCATGAGCAGCAGCGCCGCCG
CCATGCCGTGCCACGCCGCGACCGCCCCGGCGGCGCACGGGCCACCGCTCTCCTACTACTACAGGGCGGCGATGGTGGTG
GGGGAACTGGACCCGGCGACGGCGAAGGTGGTGATCGGGGTGGCGGGGCCGGCGCTGTCGGCGGTGGGGTTCCTGTTCGT
GGCGCGGATCGTCATGTCGTGGTACCCGAGGCTGCCGGTCACCAAGTTCCCCTACGTGGTGGCGTACGCGCCCACGGAGC
CCATCCTGGCCGCCACCCGCCGGGTGATCCCGCCGCTGGGCGGCGTCGACGTGACGCCGGTGGTCTGGTTCGGCCTCGTC
AGCTTCCTCAGCGAGATCCTCGTCGGGCCCCAGGGCCTCCTCGTCCTCCTCTCCCAGCAGCAAGTCTCCCCCTCCCCATA
GTAGCCTCCTCTTCAGCTTACCCCAAAATACCTTCTTCTTTCTTTCCTCCATCTAATATATGAGCGAGCTTATAATCATG
GGCGCGGATGAGTTTTCGACATTCGAAATTTTGCCAAAATTTGTCAAAAACAGTTCAGTTCCCGACCCCGAA--------
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------------------------------------------------AACATACAAGTCCGAGTCTAGGACAAAACTTG
----CATATTCATACTCAACTGTA--------------------------------------------------------
-------------------------------------------------------------ATGAACTCGGTACAAAATC
GACGCAGCAAGTGCCCCCAAACAGAAGAGAGATCCGGAACCAGCAGGCGACTCGGTCGACGCAGAACTAAATGCAAGACA
------AAGGGCAGCATCAGGGAGATGAATTTTGAACTAGTTGATATTTACAAA-GGGCAC-GCTTCGCGCCACCCAGTG
TTTATACAAATAATTTGCTACATGTCGCCGCCGGTCGATTCCGGCGGCAAATCTGA--TCTC--TGTGTATTCTGTATGA
GAACATGATTATATATATATATATACCATGTTATCCTGTTTGGAAAGAATAGGA-----ATTTCCCTTCTACAACCCC--
--TGTATATTGTTCTGCTCTATCTCCAATA--------------------------ATAGGCTGCTGCTTCTATTTCAGG
CAGCAAGGTGACTA---TTTGTACTGTATGTAAGTCAGTATACAGCTGAGAGTAACTAAAGCCCATCAAAAATTAAGGCG
AC-GGCAACGGCTAGTGGTTGATTGCGCACAGCTCCCACTTCCCTTCGCCGTCGATGAGCTTCAGTTCCAACGAATGGAA
GGGTATCAGAGCTGGCCTCTGTAAAACAAATAGGCGAGAGACG---TCAGCAT--------------CACAGAGTTTCAC
ACTCGGAAAGACGCAACCACGAGGGG------------------------------------------------------
---------------------------------------------------
>chr3A_4
---GTCGAGGAGCACCTCGACGGCCTGCGGAATGTAGGCCTTGAGCGTGTCGTAGCTGTAGACCATCTGCTCCCTGGAGG
CGGAGGCGCCGACGTTGCCCCCCGTGGCCTCCACCTCCTGCACGATCTGCATGTGGCTCCGGTGCGCCGTGTCCTTGAAC
GCCAGCTTCTCCAGCAGGTGCGTCGCGCCGGTGGACTCGGGCGACTCGTGGATCGAGCCGGACGCCACGAACACCCCCAC
GCACGCCGTGGGACCCTGACAAACCACCG--CACGGAGGCGTCAGCGGAGC---------------------------AC
CATATGGGCTCATCAGGAGGGGGAGATGGGGGAGGTGGGTGGTACCGGGACGTCCTCGGAGGCGACGCGGACGCCGTTGG
GGAGCGTGGTGATGCGGGTGGGGAGGCGGGCGAGCTGGTCGGGGAGGCAGGGCGGGAGGTCGAGCCCCGGCAGCGGGTGC
AGGAGCGAGGTCGAGCGCGCGGCGGAGGCTGCGCCGGAGAGCCGCCGCGTCATCGTCGGCAGCGGCGGCGGCACTCTTTG
GACCTCGCCGCGCACCAGCGGCCGGGACGCTTCGCACAGCTGCAATTGACGCAATCCATCCCAGAAACCGTGAGGCAGGC
AGCAGGGCGACTAAATACAAGC-------------GGGCGAGCGGC----GGACTCACCTTGCGGAGCAGGCGGGCGGAG
GAGCGGAGCCGGAGCATCGCGGCGGCGGGGCCGGG---GCTGGTGGAGGGAGCCGCCGGCGAGGAGGAGG-AGGAGAAGC
TGCCGTGGAGGAGGGGAAGGGGG------AAGGAATAGTTCGGCTCGGTCTGCTGGGCCTTAGGTAGGGTTTTTTTGGTG
CCACGCTGGGCTCGGACCGGGCCGTCGTCCACTGGAGACCCGGTAGAATGAGCCCAAGAAGAGTTCCCGGCCCTTCCTCT
TCGTCTAG-TTTTTCCTTTTTTTTTTCTGCCTTATCCTCGGAGAGCAGGAAAAGGCCACGGCCACGAGCCGCTGTTGCTG
CTTCCCTCCTCTCCTCTGTTTTT--CTCTGCCTCTCATGGAGGCCTCCATGCTCAAGCCGTCGGTGTTGCTATCTCC---
------------------------GGCGCGGGGGCGGGGCTGCGTCGTCGCCGGCGCCGGCGGCCGCGG---------CA
GCAAGGTCGGACGGCTGGTTCTTGGTTGCTTACTGTTCATGGAGAGCGAGCTCCATCCATCGTCTCTCACACGCTGCTTC
TTTTTCATTTCTT-TCCAATCAATCAGAACCTCGAGACACGGCGGCCGGAAGGG------------------------AG
CGAGCCGGCCAGAGGAGCCCACGGCCATGTCCTACCCCT---------GGCGGCAGCGGCGGTGAGCAGCAGCGCCGCCG
CCCTGCCGTGCCACGCCGCGACCTCTCCGGCGGCGTACGAGCAATCGCTG---------TACAGGGCGGCGGTGGTGCTG
GGGGAGCTGGACCCGGCGACGGCGAAGGTGGTGATCGGGGTGGCGGGGCCGGCGCTGTCGGCGGTGGGGTTCCTGTTCGT
GGCGCGGATCGTCATGTCGTGGTACCCGAGGCTGCCGGTCACCAAGTTCCCCTACGTGGTGGCCTACGCGCCCACGGAGC
CCATCCTCGCCGCCACCCGCCGGGTCATCCCGCCGCTGGGCGGCGTCGACGTCACGCCGGTGGTCTGGTTCGGCCTCGTC
AGCTTCCTCAGCGAGATCCTCGTCGGGCCCCAGGGCCTCCTCGTCCTCCTCTCCCAGCAAGT---------CTCTCCCTC
GTAGTATCTTCTTCAGCTTAGCCAAAAATGCTTCTTATTTTCTGAGTG-----TAATATACGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAGAAGATACAAGTCGAGTCCAGACGTGGAAACCA
AGTCCATATTCATACTCAACTATACTATCTGCCTTTCCGGCAATGAAGCTTTTCGCTGCCAAAGGAGAAAGATGCACAGG
TTGCAACAATTTGACAGTACTAAACGATGAATTGTGAAACCATTCCGAATTTGCTTTAGGTATGAACTCATCACAAAATC
GATGTGGCAACA--CCCCAAACAGAAGAG--ATCCCTAATCAGAAGGCGACTCGGTCGACGCAGAACTAAAAGCACAGTG
CAAGACAAAGGCATCATCAGGAAGATGGA-TTTGAACTAGTTGCCATTTACAAGGGGGCAC-GCTTCGCG----CCCGTG
TTTATACAAATAATC-GTTACACC-CACCACCATCTGATTTCGGCGGCAAATGTCA--TCTCGCTGTGTATTCTGTATGA
GAACAAGATTATATA----------CCATACTATCCTCCTTGGAAAGAAGAAAAAAAACATTTCCCTCCTACAACCCATG
TATGTATATTGTTCTGATCTATCTCCAATTGGGTGCTGCATGCCTCCCTGGCTTCTACAGGCAGCCTCTGTTTGTTGAAG
CAGCAGCTAATGACTATTTGTAC-----TGTAAGTCAGTATACAGCTGAGAGTAGCTAAAGCCGGTCAAAAATTAGGGCG
ACAGGCAGTGACTAGTGGTTGATTGAACACAGCTCCCACTTCCCTTCGCCGTCGATGAGTTTCAGTTCCAACGAATGGAA
GGGTATGAGAGCAGGCCTCTGTGAAAA----AGATGAGAGAAGGCTTCAGCATCACACACACACACACAGAGAGTTTCAC
ATTTAGAAAGACGCGACCACGAGGGGCCAAAACAAGGGAGCTCGAAACGAAATCCCGTGGGACAAGGAAATCAGATCCGA
TACCCAGCGGTGCTTGTGTTAACTTGCAGAGGCTCGGGAGGATAAATTGAT
>SNPs
------------------------------------S-----S--S----------------------------------
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-----------S--------------------------------------------------------------------
----------------------------S-------------------------------------------------S-
--------------S------------------------S----------------------------------------
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-------------------------------------------S------------------------------------
-S-------------S------------------------------S---------------------------------
------------------------S--------------SS----SSSSS------------------------------
----------------------------------------------------------------------------S---
----------------------------------------------S-------------S-------------------
--S------------------------------S----------------------S---S--S-S------S---S--S
--SS-----------S--------SS-------------S---SSS------------------------S-S-------
------SS-S------------S------------------------------------S--------------------
--------SS--S------S-----------------------------------S-------------SSSSSSSSS--
------------------------------------------S------------S----S-------------------
----S-----S---S------------------------------S----------------------------------
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------------------------------------------------------------------------S-------
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------------------------------------------------------------------------S-------
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S----S-SS--S---S---SSSS-SSSSS------------S-S---------------------SSSS-SSSSS-SSS-
SSSSS------------------------------S------S-----------SSSS-SSS-SS--S-S-SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
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------------S------------------------------------S--S------S-S------------------
----------SSSS-SSSSS--S----S---S--S-----------S---------------------------------
-----SS-SSSSS---S-S---------------S-S----------------S------S-----------S----S--
------------SS-----------S-------------------------------SSSSS-------S----------
------------------------------------------S-------------SS--S-------------------
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-----------------------------------------------------------------------------S--
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---S-------------------------------------S--------------------------------------
-----------------------------------S-S---------------------------------S-S---SS-
---------------------------SS-------------------S---------------S---------------
-S---------------------------------S----------S----
>forward_946
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----------------------------------------------AATGAGCCCAGGAGAAGCTG--------------
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>reverse_2553
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------------------------------------------------------------------------CCACACTG
CAAGACAAAGGC--------------------------------------------------------------------
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