>input_sequence_70899
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------------------------ATGAGGCTGGA--------CTTTCAGATGTGGAAACAAC----GCCTGAAAAGGGG
AGGCGGAATTGCGGACCTCCCCTCTGATTTCAAGGAGAAGGCGCCCACCGGCACCGCACCGCACCTTACCGGTTCCTCTC
TGCGGCAGCAAACTCCTCCCATCCATCCCTCGTCCATCCTGGCTCAGGTTCGCACCGCCACCACCCTCT--CATCTCCTC
ATACGCACGCTTGGTCATTTTTGACTTTATTTACTCGCCGGCGTGCGCCCATCGACCAAGGTAGCTGGGGTGATTCCGGT
GTTGCTTTCCTCTCTTGACAGGCGCGAGAGGGTGGAGATGAGGAGGAAGGCGCTCGCACGGGGCTTCTCCGCCGACGGCG
TTCTCCGCCGCAGCCGCCCGCTCCCAGCGCGCCGCCGGCCACCGAAGGGGACAATAATAGCACGAGCAAGGACAAGAAGA
AGGGCGAGATCGCCAAGACCATCCGAGACAGGCTATCATCGTCTTTGTCTTCCCCCAGAAGCCGCCTCTCCTGCTGGAC-
-----GAGCCACCCGATCCGGCGGAGCAGGAGGGGGAGCGGCACCGCCAGCGACGAACATGGCACACCGGTGAACGTACC
GATGCC------------AGTGACGGCGAAGGCAATCAGGCCCCCCTCAAGGAAGGCGATCGCGGCAGGGACCAGATCCC
TGATCGAACGCAACGATTTCTACAGCCAAGAATGCAACACGCACAAGTAG------------------------------
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>chr3B_1_TraesCS3B01G212600
TCCCAATCCGCAAGGTCAAAGGCTTTAGACAAATCAAGTTTGTAAGTACAAAAGCTATTTCCTAGGTCTCAAAGGATCTT
TAGTGATAAATTGGATCGAAGACTTTACTGTAATTATGAGTATAAGATAGTCATCTTTACTGATAAAATGGATCGAAGGC
TTTATTGTAATATTGAGTATAAGCCCTGTTCAAGAATTCATCCGATTAACCAGTTAACTTGCCGATTAATCCCTACTTAT
AGGGTCATCGAGTAGCCAATAAACCGAAAAATCGTCCGATTAATTGATTAAATGGCTGATTAACTTGCCGATTAGTCGAT
TAATCCCCTACTCGCTAGCCAACCGAGCAGCTACCAGTTAACGATTTCCTCAACAATGAGTATAAGATAGTCTGAACTTG
CAT-AAACACATTGATTTCAAGTTATTATAAAACTTGAATGTAAAAAAGTTCCTAAGAAAATGTATAATACTTTTAGAGT
GGTTGTTTGTGGGTGAGCATCATATTAACGTAGATTGAATATTTTTAGCCCTTAATCATTGGGTTAAATATAGGAATCAC
ATAGTCATTTCTATATTTATAAGGCGCTGCATTGCACGTGCATGATTACTAGAGTCTATGAGTTTCACATAGGGTCATCA
AAAAGGCATATTCGTAAAATTTATTTGGAAGAA--AAA----GTTTTTCCAGCGAACAACCAAACCCATGGGACTTTCTT
CAACCGCATGGCCTATTCCAATCAATAGAGCTCAGTATTCTCAAATTAGAGTATTTACTTCATTGA-AGTAGAATGCTCC
ATTTTTATGTTTATACTTAAATTAGGGACACTTCTTTTGGGACCAAGAGAGTACTC------------------------
------------------------------------------------------------------------CCTCCGTC
CGAAAATACTTGTCATCAAAATGGACAAAAAAGGATGCATCTAGAACTAAAATACATCTAGATACATCCCGTTTTATTCA
TTTTAATGACAAG----------------------------------------TATTTTCGGACGGAGGGAGTACAATAC
AACCGACCAAATTCAGAGTTTCGAATGAGGCTGGA--------CTTTCAGATGTGGAAACAAC----GCCTGAAAAGGGG
AGGCGGAATTGCGGACCTCCCCTCTGATTTCAAGGAGAAGGCGCCCACCGGCACCGCACCGCACCTTACCGGTTCCTCTC
TGCGGCAGCAAACTCCTCCCATCCATCCCTCGTCCATCCTGGCTCAGGTTCGCACCGCCACCACCCTCT--CATCTCCTC
ATACGCACGCTTGGTCATTTTTGACTTTATTTACTCGCCGGCGTGCGCCCATCGACCAAGGTAGCTGGGGTGATTCCGGT
GTTGCTTTCCTCTCTTGACAGGCGCGAGAGGGTGGAGATGAGGAGGAAGGCGCTCGCACGGGGCTTCTCCGCCGACGGCG
TTCTCCGCCGCAGCCGCCCGCTCCCAGCGCGCCGCCGGCCACCGAAGGGGACAATAATAGCACGAGCAAGGACAAGAAGA
AGGGCGAGATCGCCAAGACCATCCGAGACAGGCTATCATCGTCTTTGTCTTCCCCCAGAAGCCGCCTCTCCTGCTGGAC-
-----GAGCCACCCGATCCGGCGGAGCAGGAGGGGGAGCGGCACCGCCAGCGACGAACATGGCACACCGGTGAACGTACC
GATGCC------------AGTGACGGCGAAGGCAATCAGGCCCCCCTCAAGGAAGGCGATCGCGGCAGGGACCAGATCCC
TGATCGAACGCAACGATTTCTACAGCCAAGAATGCAACACGCACAAGTAGGGAGCCTGCTTTTTTCTCTTCTCGGATGCT
ATCCCTGTTTCTGTTTTGGGTGTGATACTAAAATTGTACGACGAGACATTGCCCCCTTTGGGACGCGTACG---------
-------------------------------------------------AGTTTCCCCGGGTAATATACGTACCAACTCG
AAGCTTTGTAGC------AGTAGTACAAAATTGTGCAA----------GTTCATGAGTTCCAAACCATGAAACCATAGCC
GGAATCCATGTCGTGTCGCTTGTATGTC---TACCAGGCAGTCTTATACAGTCGTACACCAGTTTTAGTAACTCCCATCA
AAGTGCCTCTCTGTCGAATCGAATCAGATGACAGAATTGGCACTGAGAGATGCTATGCAAGTGCTTTCAGGCAAGCACAC
GCAAAAATTAGAATTCCCGTTGATTTGCTTTTCTGATGATGGGACGAGAGATCGATCCCTATATCTGCATGATGGAAAAC
AGATTGTCTGGCAGGCAGGCTGAATCGAATCTTTCCACTAGACGGAAAGGTCTCACACATCGGACAGATAGGTGAGAAGT
GATTCAGTGCTCCTCTC---ACAGGCAATGCATATAAACAAAACCTGTGTAAAGCACAACAGGTGTCTAATCTGCAGCTA
TCCACCTAAACACCAATTTAAATCATCACCAGGAAACTGCTTTCTGGTCGTCAAAGATTCAAGCTAAAGAACATAAC---
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-------------------------------------------------------------------------------T
ATATCAGTACCAGTACTCGGGCCGTCAAACGGTGATTAAGACCAATTTCGATTACGTAAAGCATTCCACATATAACTAA-
-------TACTAATGCTAGAACGAAGAATCACTAAACTATCTAGCACAAAACGGGCAGATGCCAT-----TCTCCGGGCG
GGCTACTTGGACATTGCACTGCTACTTCCCTATGGACATTGCGTTGGTGCAGACTACATCATCCTCCAAATCTTTCGAGC
CTCCTATGGCAGATCTCCTCGACTGAGAGCTCGTTGTTTCCACCGTCTTGGAGATGCCGTCTGCGGGAAAAGGCATGGTC
CGGGTGCGGAGTGCTGCACATCTCG
>chr3D_376
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-------------------------------------------------------ATGAGTATAAGATAGTCTGAATTTG
CAT-GAACACATCAATTTCAGGTTATTATAAAACTTGAATTGTAATTATGACTATGATATTTTTTTAATACTTTGAGAAT
GATTGTTTGTGTGTGAGC------------TAGATTGAATATTTTCATCCCTTAATTGTTGGGTTAAATATAGGAGTCAC
ATAGTCATTTCTATATTTATAAGGTGTTGCATTTCACGTGTGTAATTACTAGAGTCTATGTGTTTCAAATAGCGCAGTGA
AAAAAGTGTATTCGTAAAATTTATTTAGAAGTA--AAAACTTGTTTTCCCAGCGAACAACCAAACCCATGGGACCTTCTT
CAACCCCAGGGCCTATTCCAATCAATAGAGCTCGACAATTCTAAATTAGAGTATTTACTTTATTGGCAGTAGAATGCTCT
ATTTTTATATTTATATACTATATAATTTTATTTTATTTTGAACACAGTACAGATGCAAGCGCTCATATGAGCACCTTCGA
AAGACTGAGCCGGCATATCATCTTGAAATTTACGAAGTCACCATAGGCACCTCGTCGTCGACGGGAACGTCTCCTCCCAC
CGGAAATACTAAAATAAATTCAAAAATAAATATGAGCACCAGGACTTGAATCCTGATGGGCTGAGAATACCATAATTCCT
CTAACCATTCAATCACAGGTTGGTTCGCATATACTATATAAATTAGCTAACCATATTTTGGGACGGGAGGAGTATAATAC
AACCGACCAAATCCAGAGTTTCAAATGGGGCTGGAAAGGGAGTCTTTCAGATGTGGAAACGCCTGAGGCCTGAAAAGGGG
AGGCGGAATTGCGGACCTCCCCTCTGATTTCAAGGAGAAGCCTCCCACCGGCACGGCG-------GCACCGTTTCCTCTC
TGCGGCAGC-AACTCCTCCCATCCATCCCTCGTCCATCCTGGCTCAGGTTTGCACCCCCTCCACCCTCTCACATCTCCTC
CTACGCACGCTTCGTCATTTTTGACTTTACTCGCC-----GCGTTCGTCCATCGACCAAGGTAGCTGGGGTGATTCCGGT
GTTGCTTTCCTCTCTTGGCAGGCGCGAGAGGGTGGAGATGAGGAGGAAGGCGCTCGCACGGGGCTTCTCCGGCGACGGCG
TCCTCCGCCGCAGCCGCCCGCTCCCAGCGCGCCGCCCGCCACCGAAGGGGACAAT---AGCACGAGCAAGAAT---AAGA
AAGGCGAGATCGGCAGGACCATCCGAGACAGGTTATG---GTCTTTCTCTTTCCCCAGAAGCCGCCTCTCCTGCTGGACG
AGCCAGAGCCACCCGATCCGGCGGAGCAGGAGGGGGAGCGGCACGGCCGGCGACGAACATGGCAC---------------
---GCCGGTGAACGTGCCGGTGACGGCCAAGGCAATCAGGCCCCCCTCAAGGAAGGTGGTCGCGGCAGGGACCAGATCCC
TGATCGAACGCAACGATTTCTACAGCCAAGAATGCAACACGCACAAGTAGGGAGCCTGTTTTTTTCTCTTCTCGGATGCT
ATCCCTGTTT------TGGGTGTGATACTAAAATTGTAGGACGAGGCATTGCCCCCTTTGGGACGTATACG---------
-------------------------------------------------AGTTTCCCCGGGTAATATACGTACCAACTCG
AAGCTTTGTAC---------TAGTACAAAATTGTGCAAGTTGATGAGTTTTCATGAGTTCCAAACCATGAAACCATAGCC
AGAATCCATGCCGTGTTGCTTGTATGTC---TACCAGGCAGTCTTATACAGTCGTACACCAGTTTTAGTAACTCCCATCA
AAGTGCCTCTCTGTCGAATCGAATCAGATGACAAAATTGGCACTGAGGGATGCTATGCAAGTGCTTTCAGGCAAGCACAC
GCAAAAATTAGAAT--------------------------------------CGATCCCTATATCTGCATGATGGAAAAC
AGATTGTCTGGCAGGCAGGCTGAATCGAATCTTTCCACTAGACGGAAAGGTCTCACATATCGGACAGATAGGTGAGAAGT
GATTCAGTGCTCCTCTC---A--GGCAATGCATATAAATAAAACCTGTGTAAAGCACAACAGGTGTCTAATCTGCAGCTA
TCCACCTAAACACCAATTTAAATCATCACCGGGAAACTGCTTTCTGGTTGTCCAAGATTCAAGCTAAAGAACATACTCCC
TCCGTTTCAAAATATAGTGATTCCTCTATCCCCGTGCTTCAACTTTGACCAAAAATTTAACAAACAAGACCGATTACGGC
GGGAGCAAAAGTTATACCCGTGAATTCGTATTCAAAAGAAGTTTTCAATTATATAACTTTTTCTCCCGCCGCAATCGGTC
TCGTTGGCTAAATTTATGGTCAAAGTTGGACCTCGGGAAGCGCGGGCGCACTATATTTTGAAATGGAGGGAGTAACTAGT
ATATCAGCACCAGTACTCGGGCCTCC-AACGGTGATTAAGACCAATTTCGATTACATAAAGCATTCCACATATATATAAC
TAATACGTACTAATGGTAGAACGAAGAATCACTAAACTATCTAGCACAAAACGGGCAGATGCCATGCCAGTCTCCGTGCG
GACTACTTGGATATTGCATTGCTACTTCCCTATGGAAGCTGTGTTGGTGCAGACTACATCATCCTCCAAATCTTTCAAGC
CTCCTACGGCGGATCTCCTCGACTGAGAGCTCGTTGTTTCCACCGTCTTGGAGATGCCGTCTGCGGGAAAAGGCATGGTC
CGGGTGCGGAGTGCTGCACATCTCG
>chr3A_376
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-------------------------------------------------------ATGACTATAAGATAGTCTGAATTTG
CAACGAACACATCAATTCCAGGTTATTATAAAACTTGAATTGTAATTATGACTAT----------TAATACTTTGAGAGT
GGTTGTTTGTGTGTGAGC------------TAGATTGAATATTTTCATCCCTTAATTGTTGGGTTAAATATAGGAGTCAC
ACAATCATTTCTATATTTATAAGGCGTTGCATTGCACGTGCATGATTACTAGAGTCTATATGTTCCAAATATGGCTGTGA
AAAAAGCATGTTCGTAAAAATTATTTGAAAGAAAGAAAACTTGTTTTCCCAGCAAACAACCAAACCCATGGGACCTTCTT
CAACCCCAGGGCCTATTCCAATCAATAGAACTCAGTATTTTCAAATTAGAGTATTTACTTTATTAA-ACTAGAATGCTCC
ATTTTTATGTTCATATT---ATTAGCGACACTTTTTTGGGGGGCGAAGA-------------------------------
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---------------------------------------------------------------------GAGTAGGATAC
GACCGACCAAATTCAGAGTTTCGAATGGGGCTGGAAAGAGAGACTTTCGGGTGTGGAAACAGC----GCCTGAAAAGGGG
AGGCGGAATTGCGGACCTCCCCTCTGATTTCAAGGAGAAGGCGCCCACCGGCACCGCACCGCACCGCACCGGTTCCTCTC
TGCGGCAGCAAACTCCTCCCATCCATCCCTCGTCCATCCTGGCTCAGGTTCGCACCGCCTCCACCCTCTCA--TCACCTC
CTACCTACGCTTCGTCATTTTTGACTATATTTACTCCCCGGCGTGCGCCCATCGACCAAGGTAGCTGGGGTGATTCCGGT
GTTGCTTTCCTCTCATGGCAGGCGCGAGAGGGTGGAGATGAGGAGGAAGGCGCTCGCACGGGGCTTCTCCGCCGACGGCG
TCCTCCGCCGCAGCCGCCCGCTCCCAGCGCGCCGCCGGCCACCGAAGGGGACAATAATAGCACGAGCAAGGAAAAAAAGA
AGGGCGAGATCACCAAGACCATCCGAGACAGGCTATCATCGTCTTTCTCTTCCCCCAGAAGCCGCCTCTCCTGCTGGACG
------AGCCATCCGATCCGGCGGAGCAGGAGGGGGAGCGGCACGGCCAGCGACGAACATGGCAC---------------
---GCC------------GGTGACGGCCAAGGCAATCAGGCCCCCCTCAAGGAAGGTGGTCGCGGCAGGGACCAGATCCC
TGATCGAACGCAACGATTTCTACAGCCAAGAATGCAACACGCACAAGTAGGGAGCCTGCTTTTTTCTCTTCTCGGATGCT
ATCCCTGTTT------TGGGTGTGAGACTAAAATTGTACCACGAGACATTGCCCCCTTTGGGACGAGATGTATTTTAGTT
CTAGATATATTCATTTCTGCGACGAGTAATTTGGAACGGAGTGAGTACCAGTTTCCCCGGGTAATATACGTACCAATTCG
AAGCTTTGTAGTAGTAGTAGTAGTACAAAATTGTGCAA----------TTTCATGAGTTCCAAACCATGAAACCATAGCC
AGAATCCACGCCGTGTTGCTTGTATGTCTACTACCAGGCAGTATTATGCAGTCGTACACCAGTTTTAGTAACTCCCACCA
AAGTGCCTCTCTGTCGAATCGAATCAGATGACAAAATTGGCACTGAGAGATGCTATGCAAGTG-----------------
------------------------------------------------AGATCGATCCTTGGATCTTCATAATGGAAAAC
AGATTGTCTGGCAGGCAGGCTGAATCGAATCTTTCCACTAGACGGAAAGGTCTCACATATCGGACAGATGGGTGAGAAGT
GATTCAGTGCTCCTCTCACAA--GGCAATGCATATAAATAAAACCTGTGTAAAGCACAACAGGTGTCTAATCTGCAGCTA
-CCACCTAAACACCAATTTAAATCATCACCGGGAAACTGCTTTCTGGTTGTCAAAGATTCAAGCTAAAGAACATAAC---
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-------------------------------------------------------------------------------T
GTATCAGCAACAGTAAT-------------GGTGATTAAGACCAATTTCAATTACGTAAAGCATTCCACATATA------
--------ACTAATGCTAGAACCAAGGAACACTAAACCATCTAGCACAAAACGGGCAGATGCC-TGCCATTCTCCGTGCG
GACTACTTGGACATTGCACTGCTACTTCCCTATGGAAGTTGCGTTGGTGCAGACTACATCATCCTCCAAATCTTTCGAGC
CTCCTACGGCGGATCTCCTCGACTGAGAGCTCGTTGTTTCCATCGTCTTGGAGATGCCGTCTGCGGGAAAAGGCATGGTC
CGGGTGCGGAGTGCTGCACATCTC-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S---
----S-------SS------S-------------------SSS--SS-SSS-SSSSSS-SS-S-S---------S-----
-----------S------SSSSSSSSSSSS---------------S-S--------SS-----------------S----
--------------------------S---------------------------------S------S------SSS-S-
----S------------------------------------------S--------------------------S-----
-----S--S------------------------------S--------------------S-------------------
---------------S-SS------S-------S----------S--SSSSS-SS-------------------------
-----------------------------------------------------------------------------SS-
--S-------SSSSSSS-SSSSSS-SS---S-S--SSSSSSSSSSSSS--SSSSS--SSSSSS-S-SSS-SS-SSS-S-S
S-SSSSSSS---S----------------------------------------------S------SS------S-----
---------------------------S---------------------------------S------------------
-----------------------------------------------------------------SS-------------
-----------------------------------------------------------S--------------------
S-----------S-----------------------S-------------------------------------------
-----------------S--------------------------------------------------------------
-S----------------------------------------------------------------------S--S----
----------------------------------------------S---------------------------------
--------------------------------------------S--------------------SSSSSSSSSSSSSSS
SSS---------------S--------S----------------------------S-S---------------------
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----------SSSSSS-------------------------------------------------S--------------
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-----------S------------------------------------S-------------------------------
S---------S-----S---------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
---------------------------------------------------------S----------------------
---------------------SS---------------S-----------------------------------------
------------------------------S-----------------S-------------------------------
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-------S---------------SS-S-----------------------------------------------SS----
----------------------------------------------------------------------------S---
-S----------------------------------SS------------------------------------------
------S---S---------------------------------------------------------------------
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>forward_341
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-AATCCCCTACTCGCTAGCCA-----------------------------------------------------------
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>reverse_2161
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GGAATCCATGTCGTGTCGCT------------------------------------------------------------
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