>input_sequence_70889
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--------------AAAAGACTTCCCAAGCACAGCCG------CCGAGATGGCCATCGCCGAGACGGCAGCGGCGGTGGC
GACGACGACGACGACGTCCGACACAGCGCCCATGTCCCCGGCCTCTGCGAAGGCCGGGGCGGCG---ATCGGTCCGGCGA
CGGGCGCGACGCGGCGCGGGTGGCTGCGCCGGCTCGTGCCGCGGGAGTACCTGCCCCGTAGCCGCCGGTGGAAGACCCGC
GGCGCTGGCGGCCCCGGTGCTGCTGAGGCCGCGAATGGGGGCGGCGCGGCGGGGCCGTCTTCGTACCGGAGGCTGGCGTC
GTCGCTGTCGCGGTCGTTCCGGTGGAAGCGGATGCCGGCGCTCCCGTCCCTCAGCCTGCGCGCCGGCTCGGCGTCGGCGG
CGCTGGACGAGGTGGCCTTCCGCGTCATGTACGTGGTCGAGGCCGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTT
TGCTGCGGCTGCCACATCTAGCCTGCCGCCAGCCATGTATT----CTCTGTT------ACTGTTTGTTAGTTGCT----C
TCGGTTCTTTGGTTAGTAATTTTTTCGTTTTCATCGATCGTCTACTTACTCT-----GCTGTAAATTTTCCACCGTGAGG
AAAATCCATGGAAAAATTCCCAATCTGCTCAAGATGATTTCCGTCGTTTGGGGATGAACGGATGATGGATGG---TGTGA
TGCAATTTTA------------GTTTTTGGAGCCGG-GAGTTGTTTATTACA----------------------------
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>chr1D_1_TraesCS1D01G408500
CTACGTTTCTTCATCTTCTTTTTCCGTCCATAGCACGACTACGCTAGCTAGCTCACCAGTCGTGGCGACAGCGAAATGAC
ACGAAGAGTGG--------GTACACGGACGACGTGAGGAAAAAG--AGAGAGATCGCGATCGGTATCCGGGGTCAAGGGC
TGGCCATCACATGTCTGCGTGACAGCCCTCGTGTCTTTTGTTTCAGCCGCCGAAATAAATATTCACATGTCACACAAGGC
AACGCACTATTTTGAAGA----TACGGTGAAAATCGACTTTGACTTGAAGATGCAGATTGCTCCCC--------------
---------AAGGCTTTACCTCTAC----TTTAATTAGAAGATTG-----------------------------CTTCTC
AAGACTACGATCCACTCGTTC-----------------------------------------------------------
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---------------------------------------------------------------CACATGCCGCCGATGGT
ATCTTCAATAACATTCCTCAGTTGCGCTTTCGGCATCTCCGTGTGGTTGGGTCTCTTCATCCGGTCGTCACTCTTCTTCT
TC-GGACCGATAATCCGTGCTTCGAATCATCAACGCTGGCGCCACCCAACAACATTTGATGACTTGTTGTCAATGTTGGC
CCCGTCTATGCAAACCAGGTGCAAAATG-GAGCTAAGCCCACGTCGCGCCATCGGGGCGTGCGGGTAAGAGAAGCCGTTC
ATCTCTAGTGGACATGCCCGTAATTTTTAATTTTACTGGTAGTGATTTCATAG---------------------------
-------------------------GTCTCAGCCTTTTTTAATAGTGCTATTTTCTTCGAACTTTTTTTTGACAGGAA--
TTTTCCTTCAAACTTTACACTAC-ATCAGTGATAATTAACATGGATCACCTTTTCTGAAAAGAGAAAA------------
---ACCTCACTGCGGAAAGAGTAAAAAAAAAAAACCGGCGTCGGCATCG-CGTGATGCACCGCTCGAAAACGACCTGCGC
GCGCGTGTTATCGTTGCCCTGTCTTCCTTGTACACGACGCCAA----------------------------GTCAAGCCG
GGGAATAAAACCGGGCCGGGCGCGTCCCGCGAAAAGGACCCGCCTTTGCCTTTGCTCGCCCCATAAATCACGCCGCCCGG
CG-AAGACCCACCCAAAAGACTTCCCAAGCACAGCCG------CCGAGATGGCCATCGCCGAGACGGCAGCGGCGGTGGC
GACGACGACGACGACGTCCGACACAGCGCCCATGTCCCCGGCCTCTGCGAAGGCCGGGGCGGCG---ATCGGTCCGGCGA
CGGGCGCGACGCGGCGCGGGTGGCTGCGCCGGCTCGTGCCGCGGGAGTACCTGCCCCGTAGCCGCCGGTGGAAGACCCGC
GGCGCTGGCGGCCCCGGTGCTGCTGAGGCCGCGAATGGGGGCGGCGCGGCGGGGCCGTCTTCGTACCGGAGGCTGGCGTC
GTCGCTGTCGCGGTCGTTCCGGTGGAAGCGGATGCCGGCGCTCCCGTCCCTCAGCCTGCGCGCCGGCTCGGCGTCGGCGG
CGCTGGACGAGGTGGCCTTCCGCGTCATGTACGTGGTCGAGGCCGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTT
TGCTGCGGCTGCCACATCTAGCCTGCCGCCAGCCATGTATT----CTCTGTT------ACTGTTTGTTAGTTGCT----C
TCGGTTCTTTGGTTAGTAATTTTTTCGTTTTCATCGATCGTCTACTTACTCT-----GCTGTAAATTTTCCACCGTGAGG
AAAATCCATGGAAAAATTCCCAATCTGCTCAAGATGATTTCCGTCGTTTGGGGATGAACGGATGATGGATGG---TGTGA
TGCAATTTTA------------GTTTTTGGAGCCGG-GAGTTGTTTATTACAAGGTCTGTCGCTGTCTCGTGCAAATGCT
TGCACGACGACGACAAAAAAATCTAGCTTTGGTTAGTTGGGGATTGGGAGTGAAGGAGGACTGCAAGAAGAGGTCATGGC
CATGGAGGAGGCGACAGCGACGG------CGTTTGGCTTCCCGGCGGAGGTGCGGCCGGGGGCCACGCGGGTGGGGTGGG
TCGGCATCGGCGTCATGGGCGGCGCCATGGCCGCGCGCCTCCTCGCCGCCGGGTACGCGGTGACGGCCTACGCGCGCACG
CCGGCCAAGGCGGGGGGCCTGGTCGCCGCCGGAGCGCGCCTCGCGGACTCGCCGGCCTCCGTGGCCGCGGCCTCCGACGT
GGTCTTCACCATGGTCGGCAACCCCGGCGACGTCCGCGCCGTCGTCCTGGACGCAGCCTCGGGCGCCCTCGCGGGGCTCC
GCCCCGGCGGCGTGCTCGTGGACTGCACCAGCTCCTCCCCCTCCCTCGCGCGCGAGGTCGCCGCGGCCGCGCGCGCCGCC
GGCTGCCACGCCGTGGACTGCCCCGTCTCCGGCGGCGACGTCGGCGCGCGCGACGGCACGCTCGCCCTCCTCGCCGGCGG
GGACGAGGCCGTGGTGGCGTGGCTCGCCCCGCTCTTCGCCCACCTCGGCAGGCCGACCTACATGGGCCCGCCCGGCAGCG
GCCAGAGCAGCAAGATCGCGAACCAGATCGCGGTGGCGGGCGCGGTGGTCGGCCTCGGCGAGTCCCTGGCCTTCGCCGGC
GCCGCCGGGCTGGACGAGCGGCTGTTCCTCGGCGCGGTGTCCAAGGGCGCCGCGGGGTCGCGCGTGATGGACATCTTCGG
CGAGCGCGCGCTGAGCCGCGACTTCACGTCCGGGGGCGCCGTGCGGTACATCATCAAGGACCTCGGCATGGCGCTGGAGG
TCGGCGACGGCCAGGAGGAG---GATGAGGTCAACGTGCTGCCAGGGTCGGCGCTGTACCGGCAGATGTTCTCGGCCATG
GCGGCGAACGGCGACGGCGAG
>chr1B_1
CTACGTTTCTTCATCTTCTTTTTCCGTCCATAGCACGACTACGCTAGCGAGCTCACCGGTCGTGGCGACAGCGAAATGAC
ACGAAGATCGAGTAGGTACGTACACGGACGACGTGAGGAAAAAGGGAGAGAGATGGCGATCGGCATCCGGGGTCAGGGGC
AGGCCATGGCATGTCTGCGTGACACCCCTCGTGTCTTTTGTTTCAGCCGCCGAAATAAATATTCACATGTCACACAAGGC
AACGCACTATTTTGAAGA----TACGGTGAAAATTGACTTTAACTCGAAGAAGATTGCACCCCTCTACTTCATGGCAAAA
AATAAAAGAAATGCTTTACCTCTAC----TTTAATTAGAAGATTTCTCCCCCCCTGCTTGACTTGGCATGTCCCCTTCTC
GAGACTACAATCTTCTGCTATTTATTTTATGATGATTCTAGTG--TTATGTTGCAAAAGAAATTCTAGTCTACTTACTAT
TTTTATTATCTCAATGAATGTAATAATTTGTTCTTATTATAGCTCACTGCAAACATATTTGCACACGACACGTACGCCTG
CCACCCCGGTAACAAATGACTTGAAATCCTAGAAGTCTCTAGGAGTCTCGAGGCATTTTCGAAGAAACAATGTCCTGTAG
TTGAATCCATCACCCTCCCTCACCTTAGGCGATCGATTTCGGTGCTTACAGGCCGGGGTGACTATGGATCTTTGTGCCTG
TGAGGAGATCTGGTCTAGGTTGTTAGCAGTTGGTGTCCTCATGTAGTTGGCCCGGGGTGTGAAGATGTTGGTGCATCAGA
ATAAGTGCCTCCTTCCTCCATTGCACCAGCACTGGTTTTGGCGTCGTCGGGAGGCCCGGTCCTTTAGGTCATGCGAGTAA
ATTACCTCACCGGAAGAAAAAAAATGGGAATAACTTACCACCGACGATGCTTTCACATCAGTTCATATGCCGCCGGTGGT
CTCTTCAATAACACCCCTCAATGGCGCTTTCGGCATCTAGGTGTGGTTGGGTCTCCTCGCCCGACCTTCAATTTTCTTCT
CCGGGATCGATAATTCGTGCTTCGAATCATCACTGTCGATGCCTCCTAGCAACATTCGATGTCTTCTCGTCCATGTTGGC
TCCGGCTACGCAGACCAGGTGCAAAAATCGAGCTGAGCTCACGTCGCCCCATCGGGCTG-GCGAGTAAGAGAAGTCACCC
ATCTAAT-TGGACGTGTCTGTAATTTTAAATGTTACCTGTGTTGATTTTATATGCCTCATTTTGTTTTCTTTGAAATATG
TTTCAGACTTTTTTATTGAAGGGATGTCTCAGACTTCTTTAATAATACTACTATATATGGCTTCTCACC-----------
----------------------------------------------------TTTTGAAAACAGAAAAGAGAAATGAAAT
GGCACCTCACTGCAGAAAGAGTGAAGAAAATGTT--GGCGTCGGCATCG-CGTGGGGCAGCGCTCGAAAACGACCGAG--
--------------------------------------GCGCGCGCGTGTTATCGTTGCTCTGTCTTCCTTGTCAAGCCG
GGGAATGAAAACCGCCCGGCCGG-----GCGAAAAGGACCCGCCTTTGCTCCTGCTCGCCCCATAAATCACGCCGCCCCG
CCCAAGACCGACCCAAAAGACTCGTCGAGCTCCCGACTACTTTCCAAGATGGCCATCGCGGAGACGGCAGCGGTGGTG--
-ACGACGACGACGGCGTCCGAGACGGCGCCCATGTCCCCGGCCGCGGCGAAGGCCGGGGCGACG---ATCGGGCCGGCA-
--------GCGAGGCGCGGGTGGCTGCGCCGGCTCGTGCCGCGGGAGTACCTGCCACGGAGCCGCCGGTGGAAGCCCCGC
GCTGGCGT---CGGTGGCGCTGCGGAGGCCGCGGGCGGGGGCGGGGTGGCGGGCCCGTCGTCGTACCGGAGGCTGGCGTC
GTCGCTGTCGCGGTCGCTCCGGTGGAAGCGGATGCCGGCGCTGCCGTCCCTCAGCCTGCGCGCCGGGTCGGCGTCGGCGG
CGCTGGACGAGGTGGCGTTCCGCGTCATGTACGTCGTGGAGGCCGTCGTGCTAGGCCTCGCGCTCTCCTGCTTCTTCCTC
TGCTGCGGCTGCCACATCTAGCCTGCCGCTAGCGCTAGCTATGTACTCTGTT------ACTGTTTGTTTGTTACTTGCTC
TCGGTTCTTTGGTTAGTAATTTTTTCGTTTTGATCGATCGAC----TACTCT-----GCTGTAAATTTCCCGCCATGAGG
AAAAACCATGGAGAAATTCCCAATCTGCTCAAGATGATTTGCGTCGTTTGGGGAATGGGGAT-----GATGG---TGTGA
TGCAATTTTGTACTGTATGTTCATTTTTGGAGCCGATGAGTTGTTTATTGTAAA-TCTGTCGCTGTCTCGTGCAAGCACA
GCA---------ACAAAAAAGTCTAGCTTTGGGTAGCTGGGGATTGGGAGTGAAGGAGCTG--------GAGGTCATGGC
GATGGAGGAGGCGACAGCGACAGCGACGCCGTTCGGCTTCCCGGCGGAGGTGCGTCCGGGGGCCACGCGGGTGGGGTGGG
TCGGCATCGGGGTCATGGGCGGCGCCATGGCCGCGCGCCTCCTGGCCGCCGGGTACGCGGTGACGGCCTACGCGCGCACG
CCGGCCAAGGCGGGGGCCCTGGTCGCCGCCGGAGCGCGCCTCGCGGGCTCGCCGGCCTCCGTGGCCGCGGCCTCCGACGT
GGTCTTCACCATGGTCGGCAACCCCGGCGACGTCCGCGCCGTCGTCCTGGACGCCGCGTCGGGCGCGCTCGCGGGCCTCC
GCCCCGGCGGCGTGCTCGTGGACTGCACCAGCTCCTCCCCGTCCCTCGCGCGCGAGGTCGCCGCGGCCGCGCGCGCCGCC
GGCTGCCACGCCGTGGACTGCCCCGTCTCCGGCGGCGACGTCGGCGCGCGGGACGGCACGCTCGCGCTCCTCGCCGGCGG
GGACGAGGCCGTGGTGGCCTGGCTCGCCCCGCTCTTCGCGCAACTCGGCCGGCCGACCTATATGGGCCCGCCCGGCAGCG
GGCAGAGCAGCAAGATCGCCAACCAGATCGCGGTGGCCGGCGCGGTGGTCGGCCTCGGCGAGTCCCTGGCCTTCGCCGGC
GCCGCCGGGCTCGACGAGCGGCTGTTCCTCGGCGCGGTGTCCAAGGGCGCCGCGGGGTCGCGCGTGATGGACATCTTCGG
CGAGCGCGCGGTGAGCCGCGACTTCGCGTCCGGGGGCGCCGTGCGGTACATCATCAAGGACCTCGGCATGGCGCTGGAGG
TCGGCGACGGCCAGGAGGAGGAGGAGGAGGCCAACGTGCTGCCTGGCTCGGCGCTGTACCGGCAGATGTTCTCGGCCATG
TCGGCCAACGGCGACGGCGAG
>chr1A_10
---------TTCATCTTCTTTTTCCGTCCATGGTACGACTACGCT------------GGTCGTGGCGACAGCGAAGTGAC
ACGAAGAGTGG--------GTGCACGGACGACGTGAGGGAAAAGAGAG----ATGGCGATCGGCATCCGGGGTCAGGGGC
TGGCCATGGCATATCTGCGTGACAGCTCTCGTGTCTTTTGTTTCAGTCGCCAAAAAAAATATTCACATGTCACACAAGGC
AACACACTATTTTGAAGATACGTACGGTGAAAATTGACTTCAACTTGAAGATGAAGATTGCTCCCC--------------
---------AAGGCTTTACCTCTACTACTTTTATTTAGAAGATTG-----------------------------CTTATC
AAGACTACGATCTTCTGCTATTTATTTTATGATGATTGATGGTGTTTATGTTGCAAAAGAAATTCTAGTCTTCTTGCTAT
TTTTATTATCTCATTAACGCATGTAAATATTTAGC---------------------------------------------
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---------------------------------------TAACAATGCTATCTTCTCCAAACTTTTTTCTGACAGGAATT
TTTTCCTTCAAACTTCCTTCCAATATCAGTGATAATTACCATGGATCACCTTTTCTGAAAAGAGAAAA------------
---ACCTCAGTGCGGAAAGAGTAAAAAAAG----CCGGCGTCGGCATCGTCGTGATGCACCGCTCGAAAACGACCGAG--
--------------------------------------GCCAA----------------------------GTCAAGCCG
GGGAATAAAACCGGGCCGGGCGCGTCCCGCGAAAAGGACCCGCCTTTGCTCCTGCTCGCCCCATAAATCACGCCGCCCCG
CCCAAGACCCACCCAAAAGACTCGTCCAGCTCCCG---ACTTTCCAAGATGGCCATCGCCGAGACGGCAGCGGTGGTGG-
-----CGACGACGACGTCGGAGACGGCGCCCATGTCCCCGGCCTCGGCGAAGGCCGGGGCGGCGGCGATCGCTCCGGCC-
--------ACGCGGCGCGGGTGGCTGCGCCGGCTCGTGCCGAGGGAGTACCTGCCCCGGAGCCGCCGGTGGAAGACTCGC
GGCGCCAGTCCCGGTGGTGCTGCGGAGGCCGCGAATGGGGGCGGGGCAGCGGGGCCGTCGTCGTACCGGAGGCTGGCGTC
GTCGCTGTCGCGGTCGTTCCGGTGGAAGCGCATGCCGGCGCTCCCGTCCCTCAGCCTGCGCGCCGGCTCGGCGTCGGCGG
CGCTGGACGAGGTGGCCTTCCGCGTCATGTACGTCGTGGAGGCCGTCGTGCTCGGCCTCGCGCTCTCCTGCTTCTTCCTC
TGCTGCGGCTGCCACATCTAGCCTGCCACCAGCCATGTATT----CTCTGTTAGTACTACTGTTTGTTAGTTGCT----C
TCGGTTCTTTGGTTAGTAATTTTTTCGTTTTGATCGATCGAC----TACTCTACTCTGCTGTAAATTTTCCACCGTGATG
AAAATCCATGGAAAAATTCCCAATCTGCTCAATATGATTTTCCTCGTTGGGG-ATGAACGGATGATGGTGTGAATTGTGA
TGCAATTTTA------------ATTTATGGAGCCGG-GAGTTGTTTATTACAAGGTCTGTCGCTGTCTCGTGCAAATGCT
T----------------------------TGGGCAGTTGGTGATTGGGAGTGAAGGAGGACTGGAAGAAGAGGTCATGGC
CATGGAGGAGGCGACGGCGACGG------CGTTTGGCTTCCCGGCGGAGGTGCGGCCGGGGGGCACGCGGGTGGGCTGGA
TCGGCATCGGCGTCATGGGCGGCGCCATGGCCGCGCGCCTCCTGGCCGCCGGGTTCGCGGTGACCGCCTACGCGCGCACG
CCGGCCAAGGCGGGGGCCCTGGTCGCCGCCGGAGCGCGCCTCGCGGACTCGCCGGCCTCCGTGGCCGCGGCCTCCGACGT
GGTCTTCACCATGGTCGGCAACCCCGGGGACGTCCGCTCCGTGGTCCTGGACGCAGCCTCGGGCGCCCTCGCGGGCCTCC
GCCCCGGCGGCGTCCTCGTGGACTGCACGAGCTCGTCCCCCTCCCTCGCGCGCGAGGTCGCCGCGGCCGCGCGCGCCGCC
GGCTGCCACGCCGTCGACTGCCCCGTCTCCGGCGGCGACGTCGGCGCGCGCGACGGCACGCTCGCCCTCCTCGCCGGCGG
GGACGAGGCCGTGGTGGCCTGGCTCGCCCCGCTCTTCGCGCACCTCGGCCGGCCGACCTACATGGGCCCACCCGGCAGCG
GGCAGAGCAGCAAGATCGCGAACCAGATCGCGGTGGCCGGCGCCGTGGTCGGCCTCGGCGAGTCCCTGGCCTTCGCCGGA
GCCGCCGGGCTCGACGAGCGGCTGTTCCTCGGCGCGGTGTCCAAGGGCGCCGCGGGGTCGCGCGTGATGGACATCTTCGG
GGAGCGCGCGCTGAGCCGCGACTTCTCGTCCGGGGGATCCGTGCGGTACATCATCAAGGACCTCGGCATGGCGCTGGAGG
TCGGCGACGGCCAGGAGGAG---GAGGAGGTCAACGTGCTGCCAGGGTCGGCGCTGTACCGGCAGATGTTCTCGGCCATG
GCGGCCAACGGCGACGGCGAG
>SNPs
------------------------------------------------S--------S----------------------
------------------------------------------------------S--------S-----------S----
-------SS-----------------------------------------------------------------------
----------------------------------S------S-----------S--------------------------
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------------SS--SS-SS-----------------------------------------------------------
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-----------------------------------------------------------------S---------S----
S------------SS-----S-S---------------SS---------------S--SS---SS-S---S-S-------
S-----S-------S-----------------SS-SS-SS---S--S-S-------S----S---S-S---S--------
S---S---S---S-------------SS------S---S--------S--------SS-S---S----------S-SSS-
----SSSS-----S--S-S--------S---S----SS--SS------S---S---------------------------
--------------------------------S---S-------S-----------S-----------S-----------
---------------SSSS-S-S---------------S-----------------------------------------
------------------------------SSSS-----------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
-------------------------------------------------SSS--------------------------S-
-S--------------------SSS-S---S-SSSSS--------S---------------------------S-----S
S--------------------S--S--------------------S--------------------------------SS
SSSSSSSS--------------------------------------------------S---------------------
-----S--SSS-SSS--------S--------------------S--------------S--------------------
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----------------------------------S--S-----------------------------------------S
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-------------------------------S--------S-SSSS----------------------------------
----------------------------------------S---------------------------------------
----------------------S---------------------------------------------------------
-SSSSSSSSSSS--------S-----------S------------------------------S----------------
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-------------------------------------------S------------------------------------
----------------S---------------------------------------------------------------
---------------------------------------------------------------------------S----
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------------------S--------------------S---------S------------------------------
-S-----------------------------------S------------------------------------------
-----------S--------------------------------------------------------------------
-------------------------S------------------------------------------------------
-------------------------S------------------------------------------------------
-----S---------------
>forward_1019
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---------------------------------------CGTGTGGTTGGGTCTCTTCA---------------------
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>reverse_2423
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----------------------GTTTTTGGAGCCGGGAGTTG--------------------------------------
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>forward_1024
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--------------------------------------------GGTTGGGTCTCTTCATCCGG----------------
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>reverse_2544
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---------------------------------------------------------------CAAGAAGAGGTCATGGC
CATG----------------------------------------------------------------------------
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