>input_sequence_70874
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GCAAAAAATTGACACACACCCACACAGTAGCAATGGAGATGGGACGGTCACTATGG
CTCGCGCTGCTGGTCCCTGCGATCATGGTGTCCTTCTACGGCGAGGCTGCCATGGCGGACGCCCAGACATCGACGGCGGG
AGGGTCACCGCCGGACACGAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCGACGGTGTGTACCACGCCGCCGCCGC
CGCCGGCG---------GGCAGCGACGGCAGTGGCTACTCCTCGCCGTCGCCTCCGCGCTCTATGACGACTCAGCCATCT
CCGCCGGCCGTGCCGCAGCCGCAGGCCAAGGGAGGGAAGCCCAGCGGCTACTACTACTTCTTCACCGCCGGGAGCGGCCG
GAGCTGCGCCGCCTCGAGCGCTCGTTACACGCTGCTGCTCCTGGCGCTTCTTCCCGTCGTCGCTGTTTAGGCTGCTGA--
-ATCTGGTGTGGCGCTCGGTGAGGAGTGAGGACCCGGCGGCAACTCGATCGG----CTCCTACGTGTGGTTCGC-TATTG
GTGACTAATTTATCTGGTTAAGTTTCCCATGTGCTTCCCTTCGATCGAGATGATTTTCGATAGTCACTGGTGTAATTTGG
AACTTTCGTTGTCAACCTGAATTTGGCTGATCATCATCCCTTGTGTTGTCTCTGTTTTTGTTTCGCTCAGCACACCC-CG
TTTTGCTGGGCCCCACTCTTTACAAGGCAGGTATAAA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr5A_1_TraesCS5A01G050000
AACCGAACGAGGCCTAAACATCTACGGATGCATCCAAGCACGACCATGGGCAGCACCGGACGACCATTCAAATGACTTGC
CGGACAACCACACTCCTCATATCAAAATCCTCAAATCCATGAAAATCCATGCATGTCAACCATATAACACAAATTCATCA
CCAACTCAACAAAG---------------CAAAATAAACCATAATTCAACAATTCAAACATGCCAAAAATAAAATTCAAC
TTCGAGGGCGTGTCTGGCCAACATGATGAATCACTCACGTCTTGTCTATGGCGTCTAACTATCCAGAATCACTTCCCATT
CAGACATCGAAACATTGTCAGTTGCGGGTGAGGCGGATGGCGGCTTCCTTGTTGGCAGCATGGTGGATGGGCACAGGGCG
GCCGGCCGCAGCGGAGGGGACACATCCACGTCGATTTCGACCACCTCCTTGACCGCAACTTTCTTCGCCGCAGCATCCTG
CTCGTGCTGGCGGGCACGACGCTCCCTCAGGGCGACGTTCTTTGCCCTGCAGCTTACCGCGAACAGACT-----------
---CATGCTGGCAGTGGGGGGCGGATTACTCAATGACGACATCTACGACGGCGTGGATG---------------GGGGAG
CAAGGGTGGAGGACGGCGACGTCTCGAACATGGGAAAAGAAGGATGGATGTCTGAGGAGTCTGGTCTGGTCCAACATGAC
AGCCAATCAGTGAGAGGGCCGTCCAT------------------------------------------------------
----TCATATATACAG----------------------------------------------------------------
----------------------------------------AGGGCATTTGAGGAGCCCGCTGTAGATGATGCTCTAACTT
CTCTAATATTTTATTTTAATTGGGTATGAGCCATCGATTTTTGGATATGGACCGTGGGGGGAGAATCTCCAACCCTTCAC
CGCTAAGGAGCATCTTCCTTTACAACCAACCTTTCCCTGCAGCTCATATTCCCTTTGAGCTTGAGCTACAAGC---TCGG
CGCTCGTGTATACAGTTGCAGTTTGGGTTGGCA----CTGCCTATATACCACCCACCTCTGCGCGAGTGTTTAAGATAGT
CC-----------CACAGATAAACGCAAAAAATTGACACACACCCACACAGTAGCAATGGAGATGGGACGGTCACTATGG
CTCGCGCTGCTGGTCCCTGCGATCATGGTGTCCTTCTACGGCGAGGCTGCCATGGCGGACGCCCAGACATCGACGGCGGG
AGGGTCACCGCCGGACACGAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCGACGGTGTGTACCACGCCGCCGCCGC
CGCCGGCG---------GGCAGCGACGGCAGTGGCTACTCCTCGCCGTCGCCTCCGCGCTCTATGACGACTCAGCCATCT
CCGCCGGCCGTGCCGCAGCCGCAGGCCAAGGGAGGGAAGCCCAGCGGCTACTACTACTTCTTCACCGCCGGGAGCGGCCG
GAGCTGCGCCGCCTCGAGCGCTCGTTACACGCTGCTGCTCCTGGCGCTTCTTCCCGTCGTCGCTGTTTAGGCTGCTGA--
-ATCTGGTGTGGCGCTCGGTGAGGAGTGAGGACCCGGCGGCAACTCGATCGG----CTCCTACGTGTGGTTCGC-TATTG
GTGACTAATTTATCTGGTTAAGTTTCCCATGTGCTTCCCTTCGATCGAGATGATTTTCGATAGTCACTGGTGTAATTTGG
AACTTTCGTTGTCAACCTGAATTTGGCTGATCATCATCCCTTGTGTTGTCTCTGTTTTTGTTTCGCTCAGCACACCC-CG
TTTTGCTGGGCCCCACTCTTTACAAGGCAGGTATAAAATAAAGAAGTACTTCCTCTATAGGCTAGTAATGCTCACGTGCA
ACCCACGTTAATATTTAGGCAATATATTAATTGCACACGGATATCAGGTATGTTATTATTTGTGTGTTAATCATATGATT
AATGCAATATTTGGTATGATAATAATTGCACGTTAAACACGCTTAACACTCGCCATTGGAGCAATAAAGGTTGTTGGATT
AACTTAGTTCGATGGCTGAGATCAGTTGGATCTGCCCATTTGAATCTTTTTATATTGGTATAATAATATAATATAAATAT
AGAAGATATAGATTAATATGAATCTTTCAAGCCTCCTTTGGTTTAGAGGAATTTCATAAAAATTCTAGAGGATAGAATTC
TTATAGGATTTTTTCCTTTAGAGCCCTTTGGTTCATAGGAATGGATTCCTATTCCTACATAGGATTAGTTCCTATCCTCC
ACATTTCATAGAAAAATAAAAAAGAGCCTAGACTCAATGGAAAAATTCCTTTGGTGTCAACCAAATGACATCTTGTTTCC
TATTCCTACTCATAGGATTTGAGATACATGTCATCTCATTTCCTACAAGATACCTATTCCTATGATAATCCTATCCAATG
AACCAAAAGAGGCCTCAAATCACTAAAATAGTGATCTAAATGATCGATCTTATATTAGCTTATAGAGGAAGTAGTTAGGA
CGGGCCTCTTTTGGTTCATAGGATAGGATTATTATAGGAATAGGAATCTTGTAGGAAATGAGATCCTATGAGTAGAAATA
GGAAACAAGATCATTTGGTTGACACCAAAGGAATTTTTCCATTGAGTCTGGGCTCTTTTTTATTTTGCTATGAAATATGG
AGGATAGGAACCAATCCTATGTAGGAATAGGAATCCATTCCTATGAACCAAAGGGCTCTAAAGGAAAAAAATCCTATAAA
AATCCTATCCTCTAGAATTCCTATGAAATTCCTCTAAACCAAAGGAGGCCTAAGTGGATTAAAACTCGGAGTTTCAG
>chr5D_56
-------------------------------------------------------CCGGACGGCCCCTCAAAAGTCATGC
TGGACAAATACACTCCTTATATCAAAACCCTCAAATCCATG----------CACGTCAATTATAAAGCACAAATCCGTCA
CCACTTGAACAATTCAAAATGCAACAAATCAAAATAAACCATAATTTAACAATTCAAAAATGCCAAAA-TAAAAGTTAAT
GCCTGGGTCTTGTCTGGCTAGCAT-ATGAATCACTCGCATCCCGTCCGTTGTGTCCAACTGTCCAGATTCACTCCTCATT
CGGACAGCGGAACATTGTCGGTCGTGGGCGAGGCGAATGGCGTTTTTCTTGTCGGCGGCAGGGTGGACGGGCGCGGAGCT
GGCGGCGGTAGTGGACGGGCCACATCCACGTCGATTTCGACCACCTCCTTGGCCACAACTTCCTTCGCCGCAGCTTCCTG
CTTGCGCTGGCGGGCACGACGCTCGCCTTGAAGCTGACCCCCATAGACAGGATGGAAATGGACACCGTCGAGGCATCATC
GTCCATGCTAGCGATGAGGGACAGGGTACTTGGGAACGACATCTATGGCGACGAACAAGGGCGACGGTGCGGATGGGGAG
CAAGCGTGGAAGACGGTAACGGCTCGGACGCGAGAAATGGAGAACACGTGAGGATGACGGTGGATTTGATAGACTTTATT
AAATTAATGAAATTTGGGTGGGTCCGGTCTGTCTGATCCGACGTAACGAACGCGTCCGGGCACGTCCGGGCCTCCTTGTA
TCCATCATATATATAGGCTGGATATGATGGGTGGTAGTTAGGCCGAACGAATAGGGGCCGTCTAGGTTGCAATGTTGTGA
ACAATCACTGACTGACTGGACTTTTCGTCCGGATGTATATAGGGCATTTGAGGAGATGCTCCAATTG-------------
-----ATGTTTTATTTTAACTGGGTATGACACAGCGAATTTTGGATATGGACCGTGGGCGGAGAATCTCCAACCCTTCAC
CGCTAAGGAGCATCTTCCTTTACAACCAACCT-TCCCTGCAGCTCATATTCCCTTTGAGCTTGAGCTACAAGCAGCTTGG
CGCTC--GTACACAGTTGCAGTCTGGGTTGGCTCTGCCTGCCTATATACCACCCACCTCCGCGCAAGTGTTTAAGAGATA
TCTCACTCACAGTCACAGATAAACGCATCGCGTTGTATGCCTC---CACAGTAGCAATGGAGATGGGAAGGTCGCTATGG
CTCGCGCTTCTGGTCCCTGCGATCATGGTGTCCTTCTACGGCGAGGCTGCCATGGCGGACGCCCAGACATCGACGGCGGG
AGGGTCGCCGCCGGACACGAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCGACGGTATGCACCACGCCGCCGCCGC
------CG---------GGCAGCGATGGCAGTGGCTACTCCTCGCCGTCGCCTCCGCGCTCTGTGACGACTCAGCCATCT
CCACCGGCCGTGCCGCAGCCGCAGGCCAAGGGAGGGAAGCCCAGCGGCTACTACTACTTCTTCACCGCTGGGAGCGGCCG
GAGCTGCGCCGCCTCGAGCGCTCGTTACACGCTACTGCTCCTGGCGCTTCTTCCCATCGTCGTTGTTTAGGTTGCT----
------------CGCTCG-------GTGAGGACCCGGCGGCAACTCGATCGG----CTCCTACGTGTGGTCT--------
-TGACTAATTTATCTGGTTATGCTTTCCATGTGCTTCGCTTCGATCAATATGATTTTCGATAGTCACTGGTGTAATTTGG
ATCTTTCGGTGTCGACCTGAATTTGGCTGATCATCATCCCTTGTGTTCTCTG---TTTTGTTTCGTTCAGCACACCCGCG
TTTTGCTGGGCCCTACACTTTATAAGGCAAGTATAAAATAAAGAAGTACTCCCT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr5B_750
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AACTT
CTCTAA---TTTATTTTAACCGGGTACGAGCCATCGAATTTTGGATATGGACCGTTGGGGGAGAATCTCCAACCCTTCAC
CGCTAAGGAGCATCTTCCTTTACAACCAACCT-TCCCTGCAGCTCATATTCCCTTTGAGCTTGAGCTACAAGCAGCTCGG
CGCTC--GTATACAGTTGCAGTCTGGGTTGGCTCTGCCT----ATATACCACCCACCTCCGCGCAAGTGTTCAAGAGACA
TCT------CACTCACAGATAAACGCATCCCGTTGTATGTCTC---CACAGTAGCAATGGAGATGGAAAGGTCACTATGG
CTCGCGGTGCTGATCCCTGCGATCATGGTGTCCTTCTACGGCGAGGCTGCCATGGCGGACGCCCAGACAT----------
--------CGCCGGACACAAACGTGCTGTGCGTCAGCAAGTGCGGGACGTGCCCGACGGTATGTACCACGCCGCCGCCGC
------CGCCGGCGGCGGGCGGCGATGGCAGCGGCTACTCCTCGCCGTCGCCTCCGCGCTCTATGACGACTCAGCCATCT
CCAGCGGCCGTGCCGCAGCCGCAGGCCAAGGGAGGGAGCCCCAGCGGGTACTACTACTTCTTCACCGCTGGGAGCGGCCG
GAGCTGCGCCACCTCCAGCGTTCGTTACACGCTACTGCTCCTGGCGCTTCTTCCCATCGTCGCTGTTTAGGTTGCTGAAG
AATCTAGTGTGGCGCTCG-------GTGAGGACCCGGCGGCAACTCGATCGGTCGGCTCCTACGTGTGGTTCCTTTATTG
GTGACTAATTTATCTGGTTAAGTTTGCCATGTGCTTCCCTTCGATCAAGATGATTTTCGATAGTCACTGGTGTAATTTGG
AACTTTCGTTGTCAACCTGAATTTGGCTGATCATCATCCCTTGT-TTGTCTCTGTTTTTGTTTCGCTCAGCACACCC-CG
TTTTGCTGGGCCCCACTCTTTACAAGGCAAGTATAAAATAAAGAAGTACTCCCTTTGTAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--SS-----S-S-S---
S------SS--------S---------S-------------SSSSSSSSSS--S-----SS---S-S-------S-S---
---SS-S-----SS--------------------------------S-----------S---------S-----S-S--S
SS-SS--S-S--------S-S---S-----------S-S--SS---SS-S-S---S----S------S-----S-S----
-S----S--S---------S--S-S---S------S------SS--S-----S---S---S------S----S-S-S--S
-S----S-S--S---S---S-------------------------------S--S------S------------S-----
--S-S-------------------S-SSS-SSSSSSSSS-SSSSSSSSSSSSSSS-SSSS--SSSSSSS-----------
---------S--SS--S---S-S-SS----SSSSS----------S-S--S--SSS-S----------------------
----S-----S-----SS---S----S--SS-S----S-S--S-SSSS--SSSSS-SS-SSS-S-S--S-SS-SSS-SSS
-SSSS-SSSSSSSSS---SS-SS-SS------------------------------------------------------
-------------S------------------------------------------------------------------
-------------------------------------------------------SSSSSSSS-SSSSSSSSSSS-----
-------S-----------S-----------------S------------------------------------------
--------------------------------S-----------------------------------------------
-----SS---------------S---------S--------------------------S----S-----------S-SS
S--------------------------SSSSS---SSSSS-S-SSS----------------------S-----------
--------------------------------------------------------------------------------
------S-----------------------------------------------------S-------------------
SSSSSS-------------------S------------------------------------------------------
--S-----------------------------------------------------------------S-----------
---------------------------------S---------------------S---------------S--------
-----S------------SSSSSSS-----------------------------------------------SS------
-------------------------S--------------------S---------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------S---S-S---SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_936
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ACAGAGGGCATTTGAGGAGC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2120
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGCTTAACACTCGCCATTGG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
