>input_sequence_70868
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------------------------------------CACCAAGCAAAGAAACACACGCGCAACCGCGCAACGACTGCCTG
TCCGCCCCGCGCGCTCGCGGTGGTCAGTGGTCACCATGGACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCTCC
GCCGCCGCAGCC---GCC---------CCGGCCCCCGTCGGCGTCGACGACGTATCGGACGCCGAGGTCGAGGAGTTCTA
CGCCATCCTGCGCCGCATGCGCGACGCCTCGCGCCGGCTCGTCTCCGGCGGGGTCGCCGCGGCCACGGCCCGCGCC---G
CCCCGGCCCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCGACGCCGCCTCCT
CCCTC---------------GCAGCAGCAACAGCGGGAGCCCGCCGACGAGCGCGTCGCCGAGAACGGCACGCCGCCGCG
GCGGCCGGTCCTCCGCGGCCTCGACCTCAACGCCGAGCCGGAGCCGGAGGTGCAAGCCTAGAGTAGAGCCGCACGGAC--
--GACGAGGA---CCCCTGGCCCGGGCGCGCCCGCCCCCGCAGCTCCGCGTGC--------------ACGCGCGCGCGCT
GGCCGGCGGCGACACTCTC-----TCCGCTGTACCACCGCCCACCGCCCG-------GCCGGTGC------TT----AGC
GAGCTGATCGCCGTCATCATTTGTTAGTTAC-----CTTACCAGTGGTAATTCGGTATGTTTAAACCAGCACTACTACTG
CTGCTGCTGTAGTACGACTACTTACT--TTA-------------------------------------------------
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>chr3D_1_TraesCS3D01G037900
CATGATGTTCGATAAATCGATCAAAAGTTTTTCCCGCAAAAAAAAACTATCAATTGCTTGCATTCTCAATTATCATGCTA
CCATGAGGGCATTACATAACTGGGAGATGACCTGAGATTCCATAAAAACAAATTAAGATGGTCATCGCTGGGCCTCAATG
TTATAGGTCCCGATAATGGGACACAATGACGGAGTTAAACCTGGAAGACCTCAGGTAGGGTGTCCTGAACTAAGAGTATT
GAGATGATGATAACAAGGACACATGCTTTTATCCAGGTTAGAGCTCTCTAGAGAGATAAAATCCTACGTTATGCTTGTAT
TTTATTGTTTTTAGTGGAGTACAACATATAGTTGATCTATCCTGAGATTGTCGTGTGTCATCTATCATTTTCTTTTTATT
TTATTTGGAACGACCGCTCGTGTATAATTAAGGAGATGGAGCACCCAGCTGGTGCGCATGCGTGGCTTGCTTTGCTTCCC
ATGTCGAAACTGCAGACGGTTGTGCAGACGTAGGCACCATGACGAAGTTGGAGAGCTATTCGTCGTG-------------
---------------------------CCCACCATGAAGTTCTGCCAAACCGCGGCTATTCCGTTGGCGTACCACCCCAC
TACACGATGACA-ACACTGACAACCCTCAGTGCATCCGAATCGACCGTGTGATGTTTCGCGCAT--CTTTGAAAGTTCAA
CACCTACAAACAAACGAGCAGCTG-------TGGCAATGAGCAGTGCCAGTGCCACGCAATTCTCGTTGGGTCGCGGTGC
TTCACACCGGCAGT-------------------------ACGTACGTACAACAGTACAAGGTACAGTTCTCGTGAGCAGG
ATGGGATGGGTGGTGGAGTCAGTCGCCGTCCCGTCTTAAAAAAAGGGCAGCGCCTTTTTTTTTCACCGCTCTCT-AATTG
TTTTCCAACCGGTGGCCATTCTTTCTGGGGATCATATAAGCGTGGGCTTCCGGGGGTTCTTTTCTTCCGAGACACTCACC
CGTGCAGACCACCCGCGACAGCACCCACCGCTCACCCACCAAGCAAAGAAACACACGCGCAACCGCGCAACGACTGCCTG
TCCGCCCCGCGCGCTCGCGGTGGTCAGTGGTCACCATGGACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCTCC
GCCGCCGCAGCC---GCC---------CCGGCCCCCGTCGGCGTCGACGACGTATCGGACGCCGAGGTCGAGGAGTTCTA
CGCCATCCTGCGCCGCATGCGCGACGCCTCGCGCCGGCTCGTCTCCGGCGGGGTCGCCGCGGCCACGGCCCGCGCC---G
CCCCGGCCCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCGACGCCGCCTCCT
CCCTC---------------GCAGCAGCAACAGCGGGAGCCCGCCGACGAGCGCGTCGCCGAGAACGGCACGCCGCCGCG
GCGGCCGGTCCTCCGCGGCCTCGACCTCAACGCCGAGCCGGAGCCGGAGGTGCAAGCCTAGAGTAGAGCCGCACGGAC--
--GACGAGGA---CCCCTGGCCCGGGCGCGCCCGCCCCCGCAGCTCCGCGTGC--------------ACGCGCGCGCGCT
GGCCGGCGGCGACACTCTC-----TCCGCTGTACCACCGCCCACCGCCCG-------GCCGGTGC------TT----AGC
GAGCTGATCGCCGTCATCATTTGTTAGTTAC-----CTTACCAGTGGTAATTCGGTATGTTTAAACCAGCACTACTACTG
CTGCTGCTGTAGTACGACTACTTACT--TTAATTTCTTCAGAAACGTGCGTGCACATGGAAGGGTTACTGCTGTACCGTT
GCTTCATTATTCGTGCCTGCTTATAATGGGAGATGCTTAGGGAAGGTGCTTAGAGAAATAAACCAGACTTTTTTTAGCAC
CGGTGCCTATTTGTACAGAAGAGACGATTAACTAAGCATCTCTCCTGTAGAAATAGGCACCGGTGCTACAGAAAAACTCG
GTTTATTTTTCTAAGCACCTCTCTAAGCATCTCCCATTGTACAAGGCCTAACTGGAATGATTTTCTAGCTTAATCACAGC
CCTATTATTGCTAACGCTGAGATCGGTAGTTTCAGTTTTTTTGGGTGCATGTCTGAGTTCTGAATTTCCCTTCTCTTTCG
AGACGAGTTAGTAGGCGTTTTTTTAATG-TAAATACAATAGTTAACAAATTATACTACTCCCTCGGATCCATATTACAAG
GTGCGACAATAATATGGATCCGGGGTACTTATGTGCAGGTTAATTTCGACAATTAATATGGATCGGGGAGTAGTAGTTTT
TATCAGAAGGCTCAATGTTT--TGTGCAAGTTAATTTGTGGTCCAATCTTTCTGACTAGTCGACAGCGACCTAAACTATT
CCTGTTCTACCTT--------------TTTAAAATAAAATAAAAGAACACGAAAATACATTGACGAAGACAAGTTTGGTG
GTCATCTTTATTTATTGATATGTCCCTCCATTTC---TATATTATTTGTGCTTGCTTCATTTGGACGGCTTTAACCACAG
CCCTGCTACTGATGGACGAGACTTGCCTGCTCCCTTCCCATGCTTTCATCCGTGCTTCCGCATACGTGGCTTGATTTGAT
TGGAAGAAAATAAGGCCCTGCCCCACCCCCTGAAAATCAGGGAGGAGATGATTAGATTAGAAAATAAAAAGGAAAAAGAA
CAGCCGTAGGATGAAGTGGGAGCACGGATGGGAGCATGGAGAGGGAGCAGGCAAGCCGGATCCGCTACTGATAGGTCTGA
GATTGGTGTCT
>chr3B_421
TGTATG--------------------------------------------------------------------------
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--------------------------ATTAAGGAGATGCAGCACCCAGCTGGTGCGCATGCGTGGCC-----TGCTTCCC
GTGTCGAAACTGCAGACGGTTGTGCTGACGTAGGCACCATGACGAAGTTGGAGAGCTATTCGTTGGGAATCACTGGTGGG
CACGACGAACACGCGTGCGCGGT-----CGACCATGAAGTTTTGATTCATGCAGAGC-------------ACCACTCGAC
TACACGATGACACACACTGACAATTCTCGATGCATCCGAATCGACCGTGTGATGTTTCGGGCAT--CCTTGAAAGTTCCA
CATCTACAAACAGACGAG--------------------GAGCAGTGCCAGTGCCACGCAATTCTCGTTGGGTCCCGGTGC
TTCACACCTGCAGTGCGTACGTAGCCAGTGCGCGTACGTACGTGCGTACAACGGTACAAAGTACAGCTCTCGTGAGCAGG
ATGGGATGGGTGGTGGAGTCAGTCGCCGTCCCGTCTTAAAAAAAAGGCAGCGCCTTTTT-TTTCACCGCTCTCTAAATTG
TTCTCCAACCGGTGGCCATTCTTTCTGGGGATCATATAAGCGTGGGC-------GGTTCTTTTCTTCCGAGACACTCACT
CGTCCAGACCACCCGCGACAGCGCCCACCGCTCACCCACCAAGCAAAGGAACACACGCGCAACGACCG------------
-----CCCCCGCGCGCGCG-------GTGGTGACCATGGACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCC--
----------CC---GCC---------CCGGCCCCCGTCGGCGTCGACGACGTGTCGGACGCCGAGGTCGAGGAGTTCTA
CGCCATCCTGCGCCGCATGCGCGATGCCTCGCGCCGGCTCGTCTCGGGCGGGGTCGCCGCGGCCACGGCCCGCGCC---G
CCCCGGCCCCGCGCGCGCCCGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCGCCGCCGCCTCCT
CCCTC---------------GCAGCAGCAGCAGCGGGAGCCCGCCGACGAGCGCGTCGCCGAGAACGGCACGCCGCCGCG
GCGGCCGGTCCTCCGCGGCCTCGACCTCAACGCCGAGCCGGAGCCCGAGGTGCAAGCCTAGAGTAGAGCCGCACGGAT--
--GACGAGGACGACCCCTGGCCTCG----GCGCGCCCCCGCAGCTCGGCGTGCGCACGGACGGACGGACGCGCGCGCGCT
GGCCGGCGGCGACACTCTCCATGCTCCTCTGTACCACCGCCCGCCGCCCG-------GCCGGCGC------TT----AGC
AAACTGATCACCGTCATCATTTGTTAGTTAC-----CTTACCAGTGGTAATTCGGTATGTTTAAACCAACATTAGTA---
------CTGTAGTACGACTACTTACTACTTAATTTCTTCAGAGACGTACGTGCACATGGAAGGGTTACTGCTGTACCGTT
GCTTCATTATTGGTGCCTGCTTGACTCA----------------------------------------------------
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-------------------------------------------------------AATGATTTTCTAGCTTAATCACAGC
CCTATTATTGCCAATGCTGAGATCGGTAGTTTCAGTTTTTTTGGACGCTTGTA-----TCTGAATTTTCCTTCCCTTTTG
AGACGAATTAGTAGGAGTTTTTTTAATGTTAAATACAATATTTAGCAAATTATATTACTCTCTAG---------------
----GACAATAATATGGATCGGGGG----------------------------------------------AGTAGTTTT
TATCCCAAGGCTCAATGCTTTATGTGCAAGTTAATTTGTGGTCCAATCTTTCTGAATAACCGACAGCGAAGTAAACAATA
TCCTACAAACTTGCTCTTCTACGTACCTTTTAGAAAAGGAAATAGAACACCAGAATTAATTGACGAGGACAAGCTTGGTG
GTCATCTTTATTTGTTGATATGTCCCTACTTTTTCTATATATTATTTGTGCTTGCTTAATTTGCACGGCTTTAACCACAG
CCCTGCTACTG---------------------------------------------------------------------
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>chr3A_472
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-----------------------------------------------------------------------TTGCTTCTC
ATGGCGAAACTGCAGACGAGTGTGCACACGTAGGCACCATGACGAAGTTGGAGAGCCATTCGTCGGGAACCACTGGTGGG
CACGAGGAACAAGCGTGTGTTGTCGACCCGACCATGAAGTTCTGCCAAGGCCCAGCTATGCCGTTGGCGTACCACCCCAC
TACACCATGACA-AGACTGACAATTCCCAGCGCATCCGAATCGACCGGCTGATGTTTCGGGCATATCTTTGAAAGTTCAA
CACCTACAAACAAATCGAGCGGCAATGGCAATGGCAATGAGCAGTGCCAGTGCCAGGCAGTTCTCGCTGGGTCGCGGCGC
TTCACACCTGCAGC-------------------------ACGTACGTACAACGGTACAAGGGACAGGTCTCGTGAGCA--
---GGATGGGTGGTGGAGTCGGTCGCCGTCCCGTCTTGAAAAAAAGGCAGCGCCTTTTTCTA-----GCTCTCTCAATGG
TTTTCCGGCCGGTGGCCATTCTTTCTGGGGATCATATAAGCGTCGGCTTCCGGGGCTTCTTTTCTTCCGAGGCAC----T
CGTCCAGACCAGCCGCGGAAGCACCCACCGCTCACCCACCAAGCAAAGAAACACACGCGCAAGCGCGCAACGACTGCCT-
---GCCCCGGGCGCTCGCG-------GTGGTGACCATGGACGCGCCGAGCGCCACCGCCAAGCGCAAGCGCTCCTCCC--
----------CC---GCCGCCGCCGCGCCGGCCCCCGTCAGCGTGGACGACGTATCCGACGCAGAGGTCGAGGAGTTCTA
CGCCATCCTGCGCCGCATGCGCGACGCCTCGCGCCGGCTCGTCTCCGGTGGGGTCGCCGCGGCCACGGCCCGCGCC---G
CCCCGGCCCCGCGCGCGCCGGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCGACACCGCCGCCT
GCTCCTTCGCAGCAGGAGCAGCTGC------------TGCCCGCCGACGAGCGCGTGGCCGAGAACGCGTCCCCGCCGCG
GCGGCCCGTCCCCCGCGGCCTGGACCTCAACGCCGAGCCGGAGCCGGAGGTGCAAGCCTAGAGTAGAGCCGCAACCCGCA
CGGACGACGAGGACCCCTGGCCTGG----GCGCGCCCCCGCA----------CGGACGGACG------CGCGCGCGCGCT
GGCCGGCGGCGACACTCTCC-----CCTCTGTACCACCACCCGCCGCCCG-------GCGGCCGGTGCTTTTT----AGC
AAACTGATCACCGTCATCATTTGTTAGTTAC-----CTTACCAATGGT--------------------------------
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---------------------------------------------AACACGAAAATACATTGACGAAGACAAGTTTGGTG
GTCATCTTTATTTATTGGTATGTCCATATCATTTCTATATAATG--TGTGCTTGCTTCATTTGGACGGCTTTAACCACAG
CCCTCTACTG----------------------------------------------------------------------
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>chr3D_1060
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---------------CGCGCTGGTGAGTGGTGACCATGGACGCGCCGAGCGGCACGGCCAAGCGCAAGCGCTCGTCCG--
----------CCGAAGCC---------CCGGCCCCCGTCGGCGTCGATGACGTGTCCGACACCGAGGTCGAGGAGTTCTA
CGCCATCCTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGTCTCGGGCGGGGTCGCCGCCGCCAGGGCCCGCG------
CCCCGGCCCCGCGCACGCCGGCCTGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCT
CCATC---------------GCAGC------------AGCCCGCCGACGAGCGCGTCGCCGAGAACGCCTCGCCGCCGCG
GCGACCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGCCGGAGCCAGAGGTCACCCCCTC--GTAGAGGCGCGAGGAC--
--GACGAT--------------------------CCCTGGGA----------CGGGCGGACGGACGGACGTGGGCGAGCT
GGCCGTGGACGATACTCTCC-----TCTCCTCTGTACCACCCACCGCCCGCCGGCCGGCCGGTGC------CTTTTTAGC
AAACTGATCATCTTCATCTGTTAAT--TTAC-----CTTACCAGTGGCAATTCGGTATGTTTAAACGAACATTACTATAC
TGC-----------------------------------------------------------------------------
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>chr3B_1072
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---------------------------TGGTGACCATGGACGCGCCGAGCGGCAACGCCAAGCGCAAGCGCTCGTCCG--
----------CCGAAGCC---------CCGGCCCCCGTCGGCGTCGAAGACGTATCCGACACCGAGGTCGAGGAGTTCTA
CGCCATACTCCGCCGCATGCGGGACGCCTCCCGCCGGCTCGTCTCGGGCGGGGTCGCCGCCGCCAGGGCCAGCGCCCCGG
CTCCGGCCCCGCGCGCGCCGGCATGGTGCCCCAGCTTCTCCTGGGAGGACTTCGCGCCGCCCGCCCCACCACCGCCGCCT
CCATC---------------GCAGC------------AGCCCGCCGACGAGCGCGTCGCCGAGAACGCCACGCCGCCGCG
GCGGCCCGTCCCCCGCGGCCTCGACCTCAACGCCGAGCCGGAGCCGGAGGTCACCCCCTC--GTAGAGGCACGAGGAC--
--GACGAC--------------------------CCCTCGGA----------CGGACGGACGGACGGACATGGGGGAGCT
GGCCGGCGACGATACTCTCC-----TCTCCCCTGTACCACCCACCGCCCG-------GCCGGTGC------TTTTTTAGC
AAACTGATCATCTTCATCTGTTATTTTACCTTACCACTTACCAGTGGTAATTCGGTATGTTTAAACGATCATTACTA---
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------S---------------------------SSSSS---------
-----------------------------------------------------------------S--------------
-----------------------------S-------------------S-S-------S--------------------
-----------------------SS----------------------------------S--------------------
------------------SS-SSS--------------------------------------------------------
--------S-------------------------------------------S-------------S-------------
--------------------------------------------S--------------S--------------------
-------------------------------------------------------------------------------S
---S---------------------------------------------------------------------------S
SSS----------------S----S------S---------------------------------------------SSS
SSSSSSSSSS----------------------------------------------------------------------
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-----------------------------S--------------------------------------------------
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----------------------S--SSSS--S--------------S---------------------------------
---------------------------S----------------------------------------------------
S-S------S----------------------------------------------------------S--S-----SSS
SSSSSS------------------------------------S----S--------------------------------
-----------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
-----------S--S-----------------------------SS--S---SSSSSS---------S-----S----S-
------S--------S------------------------S---S---------S-----S--S-SSSSSSSSSSSSSSS
SSSS----------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
----SS-----------S-------------------------------------S--SS---------SS-----S--S
S-SSSSSS--S-S-----------------S-S-S--SSS--S-------------------------------------
---------------------------S-S---S----------------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_153
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-----------------------------------------------------TAAGATGGTCATCGCTGGGC-------
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>reverse_1829
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--------------------------------------------------------------------GCACTACTACTG
CTGCTGCT------------------------------------------------------------------------
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>forward_163
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---------------------------------------------------------------ATCGCTGGGCCTCAATG
TTA-----------------------------------------------------------------------------
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>reverse_1839
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------------------------------------------------------------------------------TG
CTGCTGCTGTAGTACGAC--------------------------------------------------------------
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>forward_590
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----------GAGAGCTATTCGTCGTGCCC--------------------------------------------------
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>reverse_2696
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-------------------------------------------------------TTCCGCATACGTGGCTTGAT-----
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