>input_sequence_70867
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AT
GTCTAAGGTAATTGGCGACCATATTCTTCGTTCTGCTTCGCTGTCTTTCGAGGGTGTAGACATGCCGTTACGATCATGAA
AACATTTGTAGTACTGAATTTATGCTTGTGTTTTCGCTTT----CGAATGGCCTGCAGAAGATTGTGATCAGAGCCGATC
TCGTCGGCAAGAAGTGCACGAGTGGGATCCTGTCAATCGTTTCCAAGCTCGAGGGTATATCTCTCTCTG-----------
-----------ACTCTCTTCCT-----CCCTGTATATCCTGCACCGCTTGCTGCTTCTCTTTACCGAATG--TACGTGGC
CCTCCAGGGATCAAGTCCATGGTGGTCGACGACGACAAGTGCACGCTGACGGTGGTCGGCA-CCGTGGACCCGGTGTGCG
TGGTGCACCAGCTGAGGAAGTCGTGCTACGCCGCGTCCATCGTCAGCGTGGAGGACGACAAGCCCAAGGAGAAGAAGACC
CCCTGCCAGGAGGCCTGCGAGAAGGCCTGGAAGGA------------------------CAA------------------
------GTACGAGAAGGCCTGCAAGGAGAGGTGCGAGAAGGCGTGCAAGGAGCCGTGCTGCGACGACTGCGGCGAGAAGG
GGACGCCGTACGCCGGCCACGGGTACCGCTGCACGCCGGGCTGCTACTCCAGCCCCTGCGGCCTGCCCAGCTGCCACTAC
TACAGCTCCGGCTATGGCTACGGCTACGGCTACGGCGTGCGC---------GCGCCGCCCCTGGGATACACCTGGTACGA
GTAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr3A_1_TraesCS3A01G165400
TATGATGGAGAAATCTGTGCAGGATAGGTGTGTGATTGGTGTCTCTGTCAGGTTGTTGTTCATGGCCTCATTCATCATGG
ATTGAAGGACATCAATAACAATCACAAATATAAGGGGTGATAGAGGGTCAAGGGCCACATGCGTGCCCTCCAGGCCATCC
AAATGGACAAAAAAG-AACATTTTTGTTGTCTGTTTGGGCTGGCTGGTTGGAGTTGCCCTAATCAAGAAAAGAAACCCTT
CATTGTCTTTGTTGCGTCGTTACCTTTGTAGGTGACAAATTTATATTTATCCTTCTCTCCAACTTGAATCGTGATCAAAG
TGTCATGGATTTTAGAAGAGAGTGGTACCCCTCGAATTAAAACTCCAGTTTGGATGGGTTTGGGGATCCAATCCTAGCAG
CTGATCAACTTGTTCACAGAAAAATTCA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AACCGGGAATTCTAATGCAATTGCAACACCTTGTATTGATAAC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CAAGTCCTTCTACCAGCAGTTAGAGCAACGACTAGCATGACCAAATCCTAGCCAATGGTACAGTGGCATTTGAGTTGACT
TAA--------TTTCTCAGTTGCCACCGTATGCAACTTGCGGAACGTTCCTTGATTTCCTCGGGTACATACACGGAATTG
CCGTC---TGTCGT----TCTCATGATTGAAAATGCAAGCGTGTTGGAACTTTGAAAGGCCCACGGCTTTGACATTTCCA
CGGATGAAAAAACATAAAAAAGGAAGACGTAGACTGACCAATTCGGTTAGGAAGCTATGGTATATCTACGGTCTCAAAGA
ATTCTTTCGACCAGTAGCAGCGGAGTGGTTAGATTAAACACATCTAGTAGGAATATACTCCGACGATTACGACCAATTCC
CAACCAATATGGAGGTTGCTGAGTTGACTTCAGATCATATATAAACTGACTTGGAACGAGGCATTTCTCACATAACTTCA
GACAGCGCCTTGCT--CTGCACACTCAGGAGTCCGCGTCGACCTCA-GATCCAAGAC----------TAGCTCACACCAT
GTCTAAGGTAATTGGCGACCATATTCTTCGTTCTGCTTCGCTGTCTTTCGAGGGTGTAGACATGCCGTTACGATCATGAA
AACATTTGTAGTACTGAATTTATGCTTGTGTTTTCGCTTT----CGAATGGCCTGCAGAAGATTGTGATCAGAGCCGATC
TCGTCGGCAAGAAGTGCACGAGTGGGATCCTGTCAATCGTTTCCAAGCTCGAGGGTATATCTCTCTCTG-----------
-----------ACTCTCTTCCT-----CCCTGTATATCCTGCACCGCTTGCTGCTTCTCTTTACCGAATG--TACGTGGC
CCTCCAGGGATCAAGTCCATGGTGGTCGACGACGACAAGTGCACGCTGACGGTGGTCGGCA-CCGTGGACCCGGTGTGCG
TGGTGCACCAGCTGAGGAAGTCGTGCTACGCCGCGTCCATCGTCAGCGTGGAGGACGACAAGCCCAAGGAGAAGAAGACC
CCCTGCCAGGAGGCCTGCGAGAAGGCCTGGAAGGA------------------------CAA------------------
------GTACGAGAAGGCCTGCAAGGAGAGGTGCGAGAAGGCGTGCAAGGAGCCGTGCTGCGACGACTGCGGCGAGAAGG
GGACGCCGTACGCCGGCCACGGGTACCGCTGCACGCCGGGCTGCTACTCCAGCCCCTGCGGCCTGCCCAGCTGCCACTAC
TACAGCTCCGGCTATGGCTACGGCTACGGCTACGGCGTGCGC---------GCGCCGCCCCTGGGATACACCTGGTACGA
GTAGAGGTCCCCCGGAACCGGAGGATGATGCGCCATGCGCCGCCCAGGGGCACTGTCATGGCGCGTATGTACCTGGAATC
GTTACGATTTTACCATGTGTG----TGCCTGTGTGTTTGGTTCCGTAGTTCATATGCTTTGTGTCACGGTTGTTGGCTTG
CTGCAGTTTGCTTTCTGTACGGCGATGATTCCCTGGTTACTTCAGTCTTAGTACTCGGCAGTCGGCACTCGGTTGTTTCT
CATAAACAAAG----TGAAAACCCAGAAAAAGATTATTATATGAAAACGAACCGAAGAAATTGGTCACGAATCGTTGCCC
CGTCACGCCCCCGACACTACTAGGTCGCCAGCCCCCACTGCCTTGTTCAGTTGGTGGAGACTTTAATATTATTATTAGGA
ATTGCAGTGAAAAAAA-AACTCAATGAGCCTAATCATTGGAGCTTTGTGCTTGATGCTATCATTGGGCATGCAGGACTTG
AAGAAATACCATTAAATGGTAAACGCTATACCTAGGCCAATAATTTAGCTGACCCAACTTATGAAAAATTTGATCGGGTC
ATGTGTTGTCCTGAATGTGAGGAGGGATATCATCTGTCGGTACTTCAAGCTTTTGCTAGAGAAGTCTTTGACCACACTTC
TCTATCCCTTGACACTGGAGAACATCCTAATGAAGTTCTAGATTTGAGAACTCTTGGGTGCTAACAGAGGGATTTACAGA
ATTTCTGTGTAAAGTTTGGAGTGAAACCTACCATGGTGACAGTTTAGAAAAATGTCAAGAAAGATTAAGAAACTTGAGGA
AAAAGGTTAGAGAGTGGAATAAAAATGCAGATGCTTGGTACAGAAAAATTAAGATTGAAATCATTGGCAAGCTGGATGTC
ATAGATAAGAATACTGACGTCATGGGGCTTACTATTGGAGATAGATAGAAGCAAAAAAAGACTTAAGAGAACGATTGGCC
AGAACTTTAAAACAAGAAGAAATGAAATGGCTTCAGAGATATAAGGATAAAGA
>chr3D_145
--------------------------------------------------------------------------------
----------------------------------------------------------------GCCCTCCTGGTGATCC
AAACGGACAAAAAGCTAACAATTTTACGGTCCGTTTGGGTTGTCCGGTTGGAGTTGCCCTAAGCAAGAAAAGAAACC-TT
CATTGTCCTTGTTGCATCGTTGCCTTTGTAGGTGGCAGATTTATATTTATCCTTCTCTCCAACTTGAATCATGATCAAAG
TGTCATGGATTCTAAAAGACAGTGGTACCCCTCAAATCAAAACTCCAATTTGGATGGGTTTGGGGATCCAATCCTAGCAG
CTGATCAACTTGTTCACAGAAAAGCTCGAGTCGGAAATTCTAATGCAATTGCAACAACATGTATTAATAACTACTAAGTC
CTACCAGCAGTAGACGCTGGAGAGAGGAGGATCCCCGCCACCGCCGTCGGCCCCCGGGCGCATCCGGGCGGCGTGCTCCG
GCGGCGATGGGGTGAGGGAAGGAGGAGTCGGCACCGACGGCGGCTAGGGTTGGAGAACTGTCCGAGTCGCTGAGCAGGGG
CGACGCGGGGGTCAGGTGCCTTTGAGAGTGCTTTTGATTGTGCTAAAAAAGGATAGAATATGGTTTTGGACGAAGATCGA
AGAAAATGCCTTCCAAACACTCAAAGTGCCACTCAGTCTCCCTGCAGAAAAAAGGTGCCACTCAGTCATCAAACACTATG
GCATCATCAGCCATTCACTGTCTGATCTGCTAATAAAATGATAGAATATGGTGTTGCACGGAGATCGAAGAAAATGCCTC
CCAAACACTCAAAATGCCTACATAAAAGCTCGAACCGGGAACTCTAATGCAATTGCAACAGCATGTACTGATTACTGAAA
AAATAGCGCGCTATAGCATATTGAGAATTTCCTCGCTAAATATATCAGCGTACAATGTCTCGCTAATAGCACGCTATAAC
ACGATATAGCATACTAATAGCATATTTTGAGGTCTGCACTATTTTGCTGTAGCACGCTATTTTTTTCATTCTACTGATAA
CAAGTCCTTCTACCAGCAGTA-GAGCAACGACCAGCATAACAAAATCCTAGCCAATGGTACAGTGGCATTTGAGTTGACT
TGA--------TTTCCCGGTTGCCACCGTCTGCAACTTGCAGAACGTTCCTCCATTTCTTCGGGTACATACGCGGAGTTG
CTGTCGTCGGTCTTTCTCTCTCATGATTGAAAACGCAAGCGTGTTGGAACTTCAAAAGGCCCGCGGTTTTGACATTTCCA
CGGATGAAAAAACATAAGAAA-GAAGACGTAGACCGACCAATTCGGTTAGGAAACTCTGGTATAACTACGATTGCAAGGA
ATTCTTTCGACCAGCAGCAGCAGAATGATTAGATTAAACACATCTAGTAGGAATATGCTCCAACGAATACGACCAATTCC
CAACCAATATGGAGGTTGCGGAGTTGACTTCAGATCATATATAAACTGACTTGGAACGAGGCATTTCTCACATAACTTCA
GACAGCGCCTTGCT--CTGCACACTCAGGAGTCCGCGTCGACCCCA-GATCCAAGAGTACCAGAAGATAGCTCACGCCAT
GTCTAAGGTAATTGGCCACCATATTCTTCGTTCTGCTTCTCCGTCCTTCGAGGGTGTAGACATGCCGTTGCGATCATGAG
AACATTT---GTACTGAATATATGCTTGTGTTTTCACTTT----CGAATGGCCTGCAGAAAATTGTGATCAGAGCCGATC
TCGTCGGCAAGAAGTGCACGAGCGGGATCCTGTCAATCGTTTCCAAGCTCGAGGGTATACCTCTCTCTG-----------
-----------ACTCTCTTCAT-----TCCTGTGTATCCTGCAA------CTACTTCTCTTTACCGAATG--TATGTGAC
CCTCCAGGGATCAAGTCCATGGTGGTCGACGAGGACAAGTGCACGCTGACGGTGGTCGGCA-CGGTGGACCCGGTGTGCG
TGGTGCACCAGCTGAGGAAGTCGTGCTTCGCGGCGTCCATCGTCAGCGTCGAGGACGACAAGCCCAAGGAGAAGAAGACC
CCCTGCCAGGAGGCCTGCGAGAAGGCCTGGAAGGA------------------------CAA------------------
------GTACGAGAAGGCGTGCAAGGAGAGGTGCGAGAAGGCGTGCAAGGAGCCGTGCTGCGACGACTGCGGCGAGAAGG
GGACGCCGTACGGCGGCCACGGGTACCGCTGCACGCCGGGCTGCTACTCCAGCCCCTGTGGCCTGCCCAGCTGCCACTAC
TACAGCTCCGGCTACGGCT------ACGG------CATGCGT---------GCGCCGCCCCTGGGATACACCTGGTACGA
GTAGAGGTCGCCCGGAACCGAAGGATGATGCGCCATGCGCCGCCCTGGAGCACTGTCATGGCGCGTATGTACCTGGACTC
GTTGCGATTTTACCGTATGTGGGTGTGCCAGTGTGTTTAGTACCGTAGTTCATATGCTTCGTGTCGCCA--------TTG
TTGCAGTTTGTTTTGTGTACATCGATGATTCCCTGGTTACTTCAGTAC---TACTCGGCGGTCGGCACTCTGTTGTTTCT
CATAAACAAAG----TGAAAACCCAGAAAAAGATT---ATATGGAAACGAACCGAAGAAATTGGTCACGAATCGTTGCCC
CGTCACGCCCCCTACGCTACTAGGTCGTCAGCCCCCACTGCCTTGTTTAGTTGGTGGAGACTTTAATATTATC---AGGA
ACTGCAGTGAAAAAAACAACTCGATGAGCCGAATCATTACAGCTTTGTGTCATTAA----------GCATGCAGGACTTA
GAGAAATACCATTAAATGGTAAAAACTATACCTAGGCCAATAATTTAGCTGACACAACTTATGAACAACTCAAAA-----
ATGTGTTGTCCTGAATGGGAGGAGGGGTATCATCTGTCAGTACTGCAAGCTTTTGCTAGAGAAGT-TCTGACCACACTCC
TCTATCCATTGACACTGGAGAACCTCCTAGTGAAGTTCAAGATTTGAGAACTCTTCAGTGCTCACAGAGGGGTTTACAGA
ATTTCTGTGTAAAGTTTGGAGTGAAACCTACCATGGTGACAATTTAGAAAAATGTCAAGAAAGATTAAGAAACTTGAGGA
AAAAAGTTAGAGGGTGGGATAAAAATGCAAATGCTTGGTACAGAAAAATTAAGATTGAAATCATTGGCAAGCTGGATGTC
ATAGATAAGAATACTGACGTCATGGGGCTTACTGATGGAGATAGATAGGAGCAAAAA--GACTTAAGAGAACAATTGGCC
AGAATTTCAAAACAGGAAGAAATGAAAT-GCTTCAGAGATATATGGATAAAGA
>chr3B_469
ACT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAGTCCTTCTACCAGCAGTT-GAGCTACGACTAGCGTAACCAAATCCTAGCCAATGGTACAGTGGCATTTGAGTTGACT
TGATTTCTCATTTTCTCGGTTGCCACCGTATGCAACTTGCAGAACGTTCCTCGATTTCTTCGGGTACATACGCGGAGTTG
CTGTT---GGTCTTTCTCTCTCATGATTGAAAACGCAAGCGTGTTGGAACTTCAAAAGGCCTGCGGCTTTGACATTTCCA
CGGATGAAAAAACATAAGAGA-GAAGACGTAGACTGACCAATTCGGTTTGGAAACCTTGGTATAACTACGGTTGCAAGGA
ATTCTTTCGACCAGTAGCAGCAGAATGATTAGATTTAACACATCTAGTAGGAATATACTCCAACGAATACGACCAATTCC
CAACCAATATGGAGGTTGCTGAGTTGACTTCAGATCATATATAAAC-GACTTGGAACGAGGCATTTCTCACATAACTTCA
GACATCGTCTTGCTCCCTGCACACTCAGGAGTCCGCGTCGACCCCAAGATCCAAGAGTACCAGAAGATAGCTCACACCAT
GTCTAAGGTAATTGGCCACCATATTCTTCGTTT-------------------------------------CGATCATGAA
AACATTT---GTACTGAATATATGCTTGTGTTTTCTCTTC----TGAATGGCCTGCAGAAGATTGTGATCAGAGCCGATC
TCGTCGGCAAGAAGTGCACGAGTGGGATCCTGTCAATCGTTTCCAAGCTCGAGGGTATATCTCTCTCTG-----------
-----------ACTCTCCTTCCTGTGATCCTGTCTATCTTGCACCTCTTGCTGCTTCTCTTTACCAAATG--TGTGTGAC
CCTCCAGGGATCAAGTCCATGGTCGTCGACGAGGACAAGTGCACGCTGACGGTGGTCGGCA-CCGTGGACCCGGTGTGCG
TGGTGCACCAGCTGAGGAAGTCGTGCTTCGCCGCGTCCATCGTCAGCGTGGAGGACGACAAGCCCAAGGAGAAGAAGACA
CCCTGCCAGGAGGCCTGCGAGAAGGCCTGGAAGGA------------------------AAA------------------
------GTACGAGAAGGCCTGCAAGGAGAGGTGCGAGAAGGCTTGCAAGGAGCCGTGCTGCGACGACTGCGGCGACAAGG
GGACGCCGTACGGCGGTTACGGGTACCGCTGCACGCCGGGCTGCTACTCCAGCCCCTGCGGCCTGCCCAGCTGCCACTAC
TACAGCTCCGGCTACGGCTACGGCTACGG------CGTGCGT---------GCGCCGCCCCTGGGATACACCTGGTACGA
GTAGAGGTCGCCCGGAAACGGAGGATGATGCGCCATGCGCCGCCCAGGAGCACTGTCATGGCGCGTATG---CTGGACTC
GTTACGATTTTACCATGTGTG----TGCCTGTGTGTTTAGTACCGTAGTTCATATACTTTGTGTCACGATTGTTGGCTTG
TTGCAGTTTGCTTTCTGTACAGCGATGATTCCCTGGTTACTTCAGTCTTAGTACTCGGCAGTCGGCACTCTGTTGTTTCT
CATAAACAAACAAAATGAAAACCCAGAAAT--ATT---ATATGCAAACGAACCGAAGAAATTGGTCCCCAATAGTTGCCC
CGTCACGCCCCCTACGCTACTAGGTCGTCAGCCCCCACTGCTTTGTTTAGTTGGTGGAGACTTTAATATTAT---TAGGA
ATTGCAGTG-AAAAAACAACTCAATGATGTTAATCATTGGAGCTTTGTGCTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr6D_1101
TTA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------ATGCTTGTGTTTTCACATT----TGAATGACCTGCAGAAGATCGTGATCAGAGCTGATC
TCATCGGCGAGAAGTGCAAGAGCAAGATCATGTCAATTGTTGCCAAGCTCGAGGGTACCTATCTTCC------TTCCAAG
TTCCAACCCACACTATCTTCT------------------------------------TCTTTACCAAATG--TGT--AAC
T-TCCAGGGATCAAGTCCATGGACATTGACCAGGACAAGTGCACGCTTACGGTGGTAGGCACCCGTCGACCCGGTGCGCG
TCGTGCAGAAGCTCAGGAAGTCGTGCTTCGCCGCGACCGTCGTCAGCATGGACGACGACAAGCCCAAGGAGAAGAAGAGC
CCCTGCTAGGAGGCCTGCGAGAAGGCCTGGAAGGA------------------------GAA------------------
------G------------------------TGCGAGAAGGCTTGCAAGGAGCCGTGCTGCGACGACTGCG---AGAAGG
GGACACCGTC------------GTACCGCTGCACGCCGGGCTGCTACTCCAGCCCCTGCGGCCTGCCCAGCTGCCACTAC
TACAGCAATGGCTACGGCTACGGC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr3A_1104
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------ATGCTTGTGTTTTCACTTGTGAATGAATGACCTGCAGAAGATCGTGATCAGAGCTGATC
TCATCGGCGAGAAGTGCAAGAGCAAGATCATGTCAATTGTTGCCAAGCTCGAGGGTACCTATCTTCC------TTCCAAG
TTCCAACCCACACTATCTTCT------------------------------------TCTTTACCAAATG--TATGAAAT
T-TCCAGGGATCAAGTCCATGGACATTGACCAGGACAAGTGCACGCTGACGGTGGTCGGCA-CCGTCGACCCGGTGCGCG
TCGTGCAGAAGCTCAGGAAGTCGTGCTTCGCCGCGACCGTCGTCAGCGTGGACGACGACAAGCCGAAGGAGAAGAAGACC
CCCTGCCAGGAGGCCTGCGAGAAGGCCTGGAAGGA------------------------GAAGTACGAGAAGGCCTGCGA
AGAGAAG------------------------TGCGAGAAGGCTTGCAAGGAGCCGTGCTGCGACGACTGCA---ACAAGG
GGACGCCGTCGTACGGCTATGGGTACCGCTGCACGCCGGGCTGCCACTCCAGCCCCTGCGGCCTGCCCAGCTGCCACTAC
TACAGCAATGGCTACC---ACGGCTACGG------CGTGCGCGCGCCACCGGCGCCGCCACTGGGATACGCCTGCTATGA
GGAGCAGTCACGCGGAGGCGGAGGAGAATGCGGCAT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr3D_1104
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ATGCTTGTGTTTTCACATT----TGAATGACCTGCAGAAGATCGTGATCAGAGCTGATC
TCATCGGCGAGAAGTGCAAGAGCAAGATCATGTCAATTGTTGCCAAGCTCGAGGGTACCTATCTTCC------TTCCAAG
TTCCAACCCACACTATCTTCT------------------------------------TGTTTACCAAATGTATGT--AAT
T-TTCAGGGATCAAGTCCATGGACATTGACCAGGACAAGTGCACGCTGACGGTGGTCGGCA-CCGTCGACCCGGTGTGTG
TCGTGCAGAAGCTCAGGAAGTCGTGCTTCGCCGCGACTATGATCAGCGTGGACGACGACAAACCCAAGGAGAAGAAGAGC
CCCTGCCAGGAGGCCTGCGAGAAGGCCTGGAAGGA------------------------GAAGTACGAGAAGGCCTGCAA
AGAGAAG------------------------TGCGAGAAGGCTTGCAAGGAGCCGTGGTGCGGCGACTGCG---AGAAGG
GGACACCGTC------------GTACCGCTGCACGCCGGGCTGCTACTCCAGCCCCTGCGGCCTGCCCAGCTGCCACTAC
TACAGCAATGGCTACGGCTACGGCGTGCGCACACCCC---------------CGCCGCCACTGGGATACGCCTGCTATGA
GGAGCGGTCACGCGGAGGCGGAGGAGAATGCGGCAT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr3B_1104
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ATGCTCGTGTTTTCACACT----TGAATGACCTGCAGAAGATGGTGATCAGAGCTGATC
TCATCGGCGACAAGTGCAAGAGCAAGATCATGTCAATTGTTGCCAAGCTAGAGGGTACCTATCTACCTTCAAGTTCCAAG
TTCCAACCCATACTATCTTCT------------------------------------TCTTTACCAAATATATGT--AAT
T-TTCAGGGATCAAGTCCATGGACATTGACCAGGACAAGTGCACGCTGACGGTGGTCGGCA-CCGTCGACCCGGTGTGTG
TCGTGCACAAGCTCAGGAAGTCGTGCTTCGCCGCGACTATCATCAGCGTGGACGACGACAAACCCAAGGAGAAGAAGAGC
CCCTGTCAGGAGGCCTGCGAGAAGGCCTGGAAGGACAAGTACGACAAGGCGTGCCAAGAGAA------------------
------G------------------------TGCGAGAAGGATTGCAAGGAGCCGTGCTGCGACGACTGCG---ACAACG
GGACGCCGTCGTGCGGCTACGAGTACCGCTGCACCCCGGGCTGCTACTCCAGCCCCTGCGGCCTGCCCAGCTGCCACTAC
TACAGCAACGGCTACGGCTATGGCTACGG------CGTGCGTGCCCCGCCGCTGCCGCCACTGGGATACGCCTGCTACGA
GGAGCGGTCACGCGGAGGCGGAGGAGAATGCGGCAT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr3B_2144
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------GCTTTGTGCTTAATGCTATCATTGTGCATGCAGGATTTA
GAGGAATGCCATTAAATGGTAAAAACTATACCTAGACCAATAGTTTAGCTGGCCCAACTTATGAAAAAGTTGATAGAGTC
ATGTGTTGTCTTGAATGGGAGGAGAGATATCATCTATCTGTACTTCAAGCTTTTGCTAGAGAAGTCTCTGACCACACTCC
TCTATAACTTGACACTGGAGAACATCCTAGTGAAGTTCCATATTTAAGAACTCTTGGGTTCTCACATAGGGATTTACAGA
ATTTTTGTGTAAAGTTTGGAGTGAAACCTACCATGGTGACAGTTTAGAAAAATGTCAATAAAGATTGAGAAACTTGAGGA
AAAAAGTTAGAGGGTGGAACAAAAATGCATATGCTTGGTACAGAAAAATTAAGGTTGAAATCATTGGCAAGCTGGATGTC
ATAGATAAGAATATTGACTTCATGGGCCTTACTGCTGGAGATAGATAGGAGCAAAAA--GACTTAAGAGAATGATTGGTC
GGAATTTTAAAACAAGAATAAATGAAATGGCTTAAGAGATATAAGGATAAAGA
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--SS----
---S---------SS-----S----SSS---S-------S--S-S-----------------S--------------S--
-------S-------S-----S------------S--S--------------------------------S---------
-----------S--S----S-------------S---S---------S--------------------------------
-----------------------SS--S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S------------------S-S----S----S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------S-----------------------------------------
-S---------------S----------------------S----------S------S------------S----S---
-S------S---S--------------------S------------------SS--------S-----------------
-----------------S---S-------------------------------S--S-------S-------SS---S--
---------------------S--S--S---------------------------------S----S-------------
--------------------------------------------------------------------------------
-------------------------------------------S------------S-----------------------
----------------S----------------------S-S---S-----------------------S----------
-------SSS---------S---------------S--------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----S-----------S----------------------------S---S-
--------------------------------S-----------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------S---------------SSSSS---------------------------------------------
---------S--------------------------------------S----------------------------S--
--------------------------------------S--S--------------------------S-----------
S-------------------S-------------------------------------------------S---------
-----------------------------------SSS-----S------------------------------------
------------S--S-----------S-------------------S------------------------SSS-----
----------------------------------------------------S------------S-------------S
S----------------------SS-------------------------------------------S-----S-S---
-----------------S--------------------S----------------------------S----------S-
-----------------------------S--------S-----------------------S-----------------
--------------------------------------------------------------------------------
----S-------S----------------S--------------------------------------------------
---------------------------------SS-------------S--------SS---------------------
----S------------------------------------------------
>forward_137
--------------------------------------------------------------------------------
-------------------------------------TGATAGAGGGTCAAGGGCCA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_2813
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GACACTACTAGGTCGCCAGC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
